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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0322600 |
| Transcript ID | LotjaGi1g1v0322600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA polymerase II transcriptional coactivator; TAIR: AT5G09250.1 ssDNA-binding transcriptional regulator; Swiss-Prot: sp|O65154|KIWI_ARATH RNA polymerase II transcriptional coactivator KIWI; TrEMBL-Plants: tr|I3SIW1|I3SIW1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0322600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:77414614..77419036) extracted from Lotus japonicus Gifu genome v1.2.
CGGTGGCTAACCGCAAACATAACGATTTATGGAGATCAAGTTAACATTGTGGAAAGAAAAAAATGATTGATAATAAGAAT AATTCAGCAATTAATATCTTTTTAGCACCAATCAATCTCAATTGTTTAAATTTAAAATAACATATCAAATTATGATTTAA ACAAAATGCACCATTTGAACCACCTTTTAGTTTTTTTTTTTTCTCATCACTTAAAAATAAATCCAAACGTGTTACTCTTT TTTCTTTCTTTAGTCAATAATCCAAACATACTCTATATTCTTTCTTTGGTAAAAAATGAAGCATCGATCATGATCCATCA TGGGATATCTCATATCTCATATCCATTTCTATTTTCTAACACCAAACAAACCACACTCGCAAATCGCAACGCAAGTGTCT CTTGCATTGTCGTTCCATTTGGGCGCCAAAAAGAATTCTAGGTTTTCATTTTTGGCCCTCTTTCATCTCTCAATTTCACC CACTCACTCAGGTCTCTATCTATAAATATAAATTGTTAATTTGCTTCTGTGTCTCTACATTCATCACTCACACAGAAGAA AAACAACAATAGTCTGAGAGAAACTAGGGTTTCGAAAAATGTCAGGGAAGGGGAAGAAGAGGGACGACCTAGACCGCGCT TCCGACGCCGACTCCGACAGCCACGCTCCGCCCAAAAAGTCCCTCAAGAAAGATTCTGATGAAGATCCCGATTCCATCGT CGTCTGCGAGGTTCCTCTCCTCTCCTCTCATCTCATTTTCTAGGGTTTTTCCATTTTTTGTTCCTCTTTTTCTGAATTTT GTTTCAAACGCAGATTTCGAAGAACAGGAGGGTTTCTGTGAGGAACTGGCAGGGGAGGATCGTGGTCGACATTCGCGAAT TTTATGTCAAAGACGGCAAGCAAATGCCTGGGAAGAAAGGTTTGTTCAATCCTCCATTTTCATTTTGTGAAATGCTTGTT TGCTTGTCTTGTTGGGTTGAGAAATTGAATTGAACACCATGTTTAGTTTATTTATAGCTGCAATTCCTGATTCCAAAGTC ATGGACCACTGTGAAATAAGCATGTCATAGAGTTGGAAATTTCACTGCTCTAGCTAGGTTATGGGTCCAAAATTGACTGC AGTTTGGTCCTTGATATGCTCTTTAAACTACAAGCGGTGATCCTTGCTTGTATTCATTTGTATAACATTTGCTAATCTGA GTTGTTACATGAGTGAACTGAATTGGTATCTTGTGGTTTGTGTTAGTGTATTGGATGTATGTTTGTGAGCTTAATTATCA ATTATCAATTATCAATTATCAATTATCAACTATGTCATTTGCTTCCCATGGGGCATTGAAATATGCTCATTTTGTGAGAA AGAAGAAATTAGACTTTTGTGGGTTGTGAGCTTAATTATCAATTATCAACTTCTTGTACTTTAGCTCACTATTATAATAA TTACCTCTTAGTGAGATTTGACTGGACCCTGTTGGAGTGTACTCATTTTGTGTGCTCGAAGAAATTAGACTCATCTGGTC ATGGTCTGTGGTGTGATATGTTATTCAGAATAGTTTTACTGAGTGGCAACCACTGGGCGGTGGCTGGTTTGATTCTATGA TAGAAGTCTTGAAAATTGTTAAAAACCTCATTATGGCTATAAGCATGTTTAAAAAATTTGGGGTGGGTTGGCTTTGTGAA CTAAGTTTATTTATAAATTTAGTCTTTACCCTACTATCGTATCATCATTTTGTGTATCATTTTGTTATCTTACATATTTG TTTGTCTTGTGGATATTTTTAGCCCAATTGACTATTTAAGTACATTAGAGGAAATATATAATTATATAAATAATTAATTG AGGTAAAAAGATCCCAAGAGACAAACAAATTTGCAAGATAATTGCCAACAAAAGGGAGCAGTAAATGATGATTGGTTAGG AAGGAAAAGACACATGAATTTATAAATAAGCGTAGTTCACAAATTCAACACAGTTTTTTTAAAGCATGATTAGCCATGAT GAGACTTTTGACAATTTTTGGAGACAAGGTACAATTTCTATCATAGAATTACCAACTAGTGGTCTCCACTAAGTAAAAAC TATTCTGATACTTCACATATTAACCTAATTGATTGTTCATGAATAAAGTTAATATATCACACCACAACCTACAAAAGTTG TTAGTTTGCAACTTTAAAAAAAGTAGAACACCTAAATAAATTTCACTATCTTCTATTTGCCTTCACTCATCTCATCAAGT AAGATGATGTTTGGTCATAGTTGTTGACTTGATGATTTATAAGCATTGTTTTAAATGATCTTTGTCTTGTTGTTTTCAGG TATCTCATTGACCATGGATCAGGTACTTCTTGAAACCAACTGAATGTTGTATTATTATTAGTTTCTTTTCTATTCCCGGT TTGCATCTGTCGGTTTATCTTAAGATGCAGATCGAAAGATTTTGAGTTGTTTGCTCTCTATCTCTTGTATGCAGTGGAAT GTGCTACGTAATCACATTGAAGAAATAGACAAGGCAATCAATGAGAGTGGTTAGGAAATGACAGCAACTGTATTTACTAG TCTAAATACTACACTATAGGTTTAGCTAGTTTTTTTTTGGCTTGTTAAAGGCACAAGGGTCATATGATTTATTTGACTAT GCATGAAAAGCTGAGGTTGGAACCTTGTGGATTTTGATTCTGGAACTCTGGGGATTTGGATTTTGTAACTAATGTCATGT AAAGTTTCAGTCATATATTAGTAAAGTACTTTTATTAGCTTATGCTTTTGTCATTTCTTTAATTTTCAAAACTTCAAATC CTGCTCATCTTTACCTCAATCGTTTTAACCAATTTTGGTGGTTTTAAAATCTCTAGTATATAGTTCCCATGAGTGATATA TGCATTAATAATTTCTTATTATTCTCATGCATTCTTTATTTTTTTGTTTTTGATATAAACTATGTAGATTTTTTTATCAC TCTGAGGTAGAAAGAACTTGTCTTTGGAATATTGTTTTAAATTAAGTAAACATTCGAAAACATAGAATAAATTATAATTT GCCTATTGCGCACACAGCGTATTAACTTGTGCCGTGCATGTGTTCTGTGAAAGTTGTAGTGGATTATGTATATCAATCTG TTACTAGCAAGTATTCAATATGTTTCGGTGTAATCCTATAAACTTTAGTAGTAAATATCTGGACGTGGTATATTATAGCA AAACTTTTTTACATGTAACAGTACTTCATTATTTTTAATCATATTTGAAATGTTGCTCTTTGGAAACGATCAGCAAGTAA AACACTTAATCACATCTATTTGAGAATGGGCATTAGTTTTAACACCCCCTCAATTAATCCCCCACCCTCCTTTATGAACC AAAATGTCTCATCTACCCTTTAAAATTTAATTTCATTCCAAACATATCCCTTTGTCTACCTTATTACTACCATCATTTTT GTTTGTCACACTACCCTTCATTTTTACTCTCATCTCATAGTTTTCTTCATTGCCACTTTTCACACTTAATATATGTGAAA ACATTTCATACTTTGTAAGTGTGAAATGAGGTATGTTCATTCTCTCTTCACCTTCTTCCTTTCGTTTTAAGTGTTCACAC TCAGTGAGTGTGCAACATTTTCACACTCACTGAGTGTGAAAATGTTTCATAGTTAGTAAGTGTGAAAATTTCATTTTATC ACTGTTGTTCGTATTTCACACTTTAGAGTGTGAATTTGGTTTGCAGTTCACAATTTGGAGTGGGAACTAGTTGTTCCGTT CACACTCAAAAGTGTGAAATTTACTTGTTTGTGAATTTTTCATTTTGATTTTTACCCTTTTCCATTTCAGGATAGTTAAT CATGTCTCATGTGCTCATTGAGAAAGTCGATAATGTGGCTGAAGGGGATCATATCAAGGTGGATCATGTGAAAGAAGTAG ATAATGAAATGGATGATATGAAAGAATGGGGTCACATATTGAAGGACGATGAATATTTAATGAATGCAATAGATGACATG AATGTATTATCTCATGTTGTTATGGTAGATTGTACAGAAGCCTTCATCACTGATAAAATATCACATATCTCATGTGCTTA ATATGATATATACAATTTATTGACTTTATTAAATAATAAGCTAACCGTGTTTGTTGTTTGTAGAAATTCCAAAATCGGCA TGAAAGTCTTTGATTGGGCTCAGTTGGTGGGGAAGAACAATGACTTTGTTGTTATTATGATAAGGTCTGACTATGGAACC TTGAACGGGAAGGAAAGTTTGACATTAGGGTGTGAGCAGGGTGGTAAATTCAAACCATACAAGGGAAATTTTGACATTAG GGTGTGAACTTGCATTTTTCGCACTCTTGAATGTGAAATTTAACTATAAAAAAATGAAATATTTAAAATTAAAAATAAAA TTCTTAACAGTTGGTTCCTTCAC
CDS sequence (LotjaGi1g1v0322600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGGGAAGGGGAAGAAGAGGGACGACCTAGACCGCGCTTCCGACGCCGACTCCGACAGCCACGCTCCGCCCAAAAA GTCCCTCAAGAAAGATTCTGATGAAGATCCCGATTCCATCGTCGTCTGCGAGATTTCGAAGAACAGGAGGGTTTCTGTGA GGAACTGGCAGGGGAGGATCGTGGTCGACATTCGCGAATTTTATGTCAAAGACGGCAAGCAAATGCCTGGGAAGAAAGGT ATCTCATTGACCATGGATCAGTGGAATGTGCTACGTAATCACATTGAAGAAATAGACAAGGCAATCAATGAGAGTGGTTA G
Protein sequence (LotjaGi1g1v0322600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGKGKKRDDLDRASDADSDSHAPPKKSLKKDSDEDPDSIVVCEISKNRRVSVRNWQGRIVVDIREFYVKDGKQMPGKKG ISLTMDQWNVLRNHIEEIDKAINESG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 104 | 104 | 5.5E-37 | – | |
| PANTHER | 1 | 104 | 104 | 5.5E-37 | – | |
| MobiDBLite | 1 | 39 | 39 | - | – | |
| Gene3D | 41 | 104 | 64 | 1.8E-27 | ||
| SUPERFAMILY | 42 | 103 | 62 | 5.18E-22 | ||
| Pfam | 43 | 93 | 51 | 3.1E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0322600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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