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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0326500 |
| Transcript ID | LotjaGi1g1v0326500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Regulator of chromosome condensation (RCC1) family protein; TAIR: AT5G08710.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4; TrEMBL-Plants: tr|A0A151T4C7|A0A151T4C7_CAJCA Putative E3 ubiquitin-protein ligase HERC4; Found in the gene: LotjaGi1g1v0326500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:77991085..77998499) extracted from Lotus japonicus Gifu genome v1.2.
AAGAGAGAGAGTTAAAAAAGTAAAATTGGCAGCACCAACTGTACACATAACTAACCGCCATTAGTGTAGACGTTGCAGCA GCGTGAACCATGAGATGAGATGTTTGATTCTTCTACTCATTTCCCTCTCTTTTCATCTCCATCATCCTTAACCAATTTCT CAATTCCATTCCATGATTCTTCTTCTTCTTCTTCTTCATCGAATCCCTTCGATTTCCTCCACCAAACTCCATTAATTTCC CCGTCGAAATGTGGCGCCGGAGCTATCTCCGATTGTCGGAACTCCACCGCGGAGCTTCACGTTTAGGGTTAGGGTTTCCG ACACGATCGTCCTCGACTCAGCCGGGGAAGCGGTTCGCGGCGCTGTGGGGCAACGGTGATCACGGCAGGTTGGGCCTCGG CAGCTTGGAATCTCAATGGAGGCCCGCCGTTTGCTCCGCCTTCCTCAACCACTCTCCTCAAGCCATTGCTTGCGGCGGTG CTCACACGCTCTTCTTAACAGGTTCACCTCTTCAATTATCCAATTCATTATTCTTCAGTTTTTTCTAAAGTAAGAGATTG GTAGCTATGCTTGGTAGTATTGAGTCCACAAAATTATTCTTCAGTGAGAATTTGAATTACCAGCAATTGGGAAAAACTAG ATAAAATGATGGAAGAACAAAGCAAATGCCCTTGTGAAGATAAGAGTAGCAGTATTGAATTAGTTCATTTGGTTTAACTG CAACCAAATTAACTGTACTGTAATGTTGTTGAGCTTCTGGGAATTTTGCAAGACTGAAATGGGAGGGTCTTTTTTAATTT TTATTTATTTATTTATTTAGATGGATGTAGATTGACTTGGAGGTTTCTAGTTTGTGTTAGTTAGTAACTGCTTTCTTTAT GCTACTGGATGGCTATAATGTGACAGTCTTTGAAATTGGTGATGACTGTTTGAAGACTCTCGGAATAGGGGCTTACGAAT TGTCCTCCTTTCACAGACAATGGATGCGTTTACGCTGCTGGTCTCAATGATTGTGGACAGCTTGGTACATCGGAGAGTGT GAACTACTCTCTGGTATGAATTCTTCGCCTTTTCACCTCCATTTTTGTTGAGTGAACTTGTCACATTTGCAATATATTGT TGTTTTGTCCATTGTTGATGAGTGTATTCCCGTTAGAAATTACGAGGAAATATATTGTTTGCAATTTCTATAATTGGGAT GTTTCCTTTAACTCTCCATGTTGTTGCAGGAGCCACTTCAAGTTTTAGGACATGAGAAGAATATTGTGCATATTTCAGCT GGTTATAATCATTCTTGTGCGGTAACAGGTCTGTGCTTATGCACTCTATTATCATCTATGTCAATAATAGCTTCCCTTGG CCCTTCATCACTTTTCTTTGAAGTCGGCTGACTCCCCCCCCCCCTTTAGAATAGCTTAAATTCTTTTAGGATACAGGGAA TGAAAGATAAATGTCGTATCTTTAGAAATCAGTTGTTGAACACACTTCCGTTAATTAAACTTAATCTAATGGCAGGTTAA CTAAGAAACTATTGTTCAAAACCATATACTATTTTTATATAAAAATATTAATGCCTACTGTTTGCAGTTCTGTATTTAGT GTAGTAACTTGTAGTTTGGATTGTTGATAAACAATTTTCTAAAAGTTGGTTGTTTTAATTTATGGTAAGCTTCAAGGTTG CTCTGCAAGGAGATTCCACAAAAGAATTTCATGCAGAAGTTTGAGTTCAATATCTATTTAGATAATATAGGATCTGGCAT TTGATACATACTGTTTTGGCGTATATAGATTCGATTTAGGAGGCTGCTTAGGGGCGCTTGCATTATTTTTGTTTATTCCT TATTAAAATTTAAAACCATTATTTGTTAATACATTTGACCTTCTGAATTTCTGCAAATTCTTTATTTCTTATTTCTAAAA AGCATTTTCTCTCTTCCCCTCACTCTTGTTTCTTACTTTTGTAGTGGATGGAGAACTATATATGTGGGGAAAGAATACTA ATGGGCAGCTTGGACTCGGAAAAAGTAAGAAATAGACTGTGTATTAACATGTAATATATGTAGAGTGTTTTCCCTTGAGC CTGGTAATATTATATGAACTTTTTTAAAACTGGATACTCCTAATAGCAGGAGCTTTAAAGATGGTAAAAAGAAGTTGGCT GATGGCAGCTACTTTTTTATATAATGCTGTTTTGCTGACATGTAGGAGCTCCAAACATAGTTCATTTGCCAACTAAAGTG GAATACTTGGATGGAATCACCATTAAAATGGCTGCTTTGGGTGCTGAGCACTCATTGGTTATTAGTGGTATGCAATAGAC AGATCTTCATAAGTTATATTGTATTAGTTGCTGACATTGATTTATTTGTTTTTTCCTTTTAAATTTTTCTTGTATTTAGC TGCATTCTTTACCTAGTTTTTCAGTTACTTAGGATTAGGATCATCTTGTTTGTGGATTAGAAAAATGCTAGCAACACTCT CTCATTGATTGGTTGAATCCATGTGGAGTCCACTAAAAATATGGGTCCCACTTCCAATGTAATGAGACCCATGTGAATTT CAACTGGTCAATGAGAGAGTGTTAAAGTGAGTGTTGCTAGCACTCCTCTTGTGGAATGAAGGGCAGATGCATATAATAAA AAAATCGTCATGTCATGAAGTATAAGGTAAAAGTGGGAAAAAATTGTAGGATGTGCTTTGTTTTGAATGTGAAAGAATTA ATGATTTTGAAAATTGAAAGAAATATTGCAGTTTTTAGGTCACAGCGATTCCAAAATGTTGCAATCAAGCAAATTTTTTC ACAATCTTAATACAATACTCGAGCAAAAACATAGCATATTTACAATTTTTGATTTTGACGATCATACTGCTTTCTCTGAC TTCCTCATAGCAAGCATGACTTGGTATTGTACCTAAATAATCTTAACATGTTCTCAATTTGGTTCTATCTTTACTAGATG GTGGAGAAGCCTTCAGTTGGGGCATGGGAGTGTCTGGTAGACTTGGTCATGGTCATGAGTCGAGCTTACTAGGATTCTTC AAAACTTACAGGTTTTGTCCCTTCTTTTTGTGTATAACTGTTAACTACATTAATTTGTACTTTTATTCATTTTATTTCTT ACTTAAGTCGTGCTTATGAATAAGAAGTCTTTAAGAAAAAATCAAGTATGCAAGCATGGTTTCTATATTTGTTATTTGAT ATACTGGAAGAGAGCTGCGTTGACTAGGAATCTTTGAAACTTTTCCATATTATTCGATTTCTGTGGATATATATTAATGT ATATTTTAAAATCGTGCAGTGAGTACACCCCGAGGCTTATAAGAGATCTTGAGGGAATCAAGGTGTGATGAACTTAATGT CTTCTTGTTTCTACTTTATGATCTGCAAACTTATAATTTTGAATTCTATTTCTTTGGCCCCATTCTGGAAATATGTTTAG GTAAAATATGTAGCTGCTGGGATGCTAAGTTCGGCTTGTACTGATGGTACTCGATAGTCTATTATCTTTCTCTATTTTCT CGTAACAAACCATGGTTGTACTCAGCAATCAGCAAGGAATTAATCATTGATTTTGGCTCTTCCTTCGTGTAATTGTTGCA GAAAATGGTTCTGTTTTTATATTCGGAGAAAGAGGGATTGACAAGTTGGTAAGTAGCTCAACCAGTCGCAATTATTATTA TTATTATTATTATTATTATTATTATTATTACTTAACTCTATTATCAACTGGTTTTATTGACAAGTGCTTTATTCAATCAA AATATTCAGTGTATGAAGGAGACGAGCGATGCAACAAAACCATCCTTGATTAGTAAACTTCCATACTCGGAAGAAGTTTC TTGTGGTGGCTATCACACCTGTGTCTTGACAAGTAATTCATCAGTTTTTAGCCTAACGCAAGTTTTTTGTGACAATTTAT TTACTGCTTCATTCTATTTATTGTTTTTCTATAGATTCCGGTGAGCTTTATACTTGGGGTTCAAATGAAAATGGCTGTCT TGGTATAGGGTATGTTCTTAATTTTCATTTTTTGCATTTACATTCCTTTCTGCTTCTAAATACCATTGTGTTCATTCTTA CTGTCATTTTTATGTAGTTCACCAGAAGCCATTCATCTACCTGAAAAGGTGCAAGGTCCTTTCATGAAATCTTCTGTTAG CCAGGTTTCTTGTGGTTGGAAACATACAGCAGCCATTTCTGGTATGTTCTTGCCTTCAATAGAAAAGAAGAATTTTTTTG CAATTGTATACTTATTTTTTTGTCAATTTAATGCAAAGGCAGATTTGTCCTTTTTATTATTGTAAAATAATAATTCTATT GAGATAGAGAAGATGATTACAAAAGGTTAGGAGGATAAGTGATCCTCCTTAAAAGTGATATAAGAAACACACTAGGAGAC CAAAAAAAATATTAAATATCTATAAAGCAAAGCTACCAATCCTTCAACATATCTGTATGGGAAACCTCTTTAGGACGTGT TTTTACATCAATTAGATGCCAACTATGTTTATCTAATTCCAAATGAACTCTTCGCAAAAATAATGATAGTGTCGCAGCCA ACCCCTGATTCGCCACGCTCCGCCGCTATAGCGCCGCAATAGCCCGCTATTGACAACCCTGGTCAGGATATCAGGACGGA CTTTTATTTCAATTCATAAGAGTTCCGTTCACGTTTTATCTCGAAGTAAGTGCTAACATGAAACATCCATTTGCACGGGT GTCAATGAGTATCTAAACATAGCTAGAAAAGTTCATTTATAAGTAGAATGAAGCACTTAATTATTGTAGGAGCAAGCACA AAGTCTCATCAAGAACATTCTGAAAGGAATTTGATGTGCTGAAAAGAATTTTGATATAAAGAAGTTGACGATCAAAGAAT TTTGATACAAAGAAATGGGCGATCATTATCTTGCTAGAGAAAAATGGTCTGATTTGGAAGGCTAAGAGTAGTCCTTACTC ATAGCAAGATATTAAAGGGCCGTGGAATACAGAAGAAAATTGCTATCCAGGTATCAGACTTGTGATTCACTAATTTCAGG AGACAGCGAATACATGCTAGTGAACATAAAACACCTAAACTCCCAAGAAATTTAACAGTGTCAAGTTAAATCACATTAAT AGACCTGAAGTATAATTGTAGTCTACCTACAGTCCTCTGTGAAACTAGGATTGCTAAAGTACCCCTACAGTCCTCTATCT TCATGTTATAATGCTTCTTAGACCTGTAATGTAAGCAGTTAGCAAACTGAATTTCTATACAGGAATGAGATGGTGTGAAC TCAAAAACTAATGATCTGTTTCTTGCCACCTGGAAAAACTCCATGCTTCTTAATTCCAGTATTTGTTGATGGCATATTTA GTTTCATTTTAAACATCAAAATTGCTTTTCACTGCATGTAAACTGGCATATCAGGATGAACTTTTTCCATCTTTCTTTTA GGCAGTATCTATTTTAGTTGATTTAATTTTTAACATGCTCTCACTCAGTGATGGATCCAGAACTTTTGGATTGTGGGGGC AATTTTTTTTTTTATCTTAAGCAAACTTTTCCTATAGCCGATAGACGCAATACTAATTTCTAGCTTCATAATCAACGCAC TAAGTTGTAGAGTCTGATCAATAAATTTTCCATTCATAGTATGTTAAATGTTAACATTAAAGAGATAAAAATGTAGAATC AAATAAAAGTATAATTAATATATTAAAGACAATACATCATGATCATAATTAGAGGAAAAAAATCATCATCGGGGCAATTA ATATTTAATAGTAGTAGAATCAGTATATGTTAGAGACAATCAATATATTATACAACATATGGGAGGAAAATCAAAATTCT CGTGGGGGCATTTGCCCCCATATGACAATACATGCATCCGTTCCTGCTCTCACTTGTAAGAAAAAGATTGTACTTGATGT TTATACTGTATTAGTTCCAAAAGAAAATGTTTTTAATGCTGTTATTTATCCTGGAAGTTTTCATTAACTTTCAGAAGGGA GAGTTTTCACATGGGGTTGGGGAGGTTCCAATGGGACTTTCTCTGTAGATGGACATTCCTCAGGTGGACAACTGGTATGC TTCTACTTCTCATACAATTTGTAATTTCTTGTATTATTAGAAACTTATCAGGAGCAGCAGGTTATATTCTATAACGATAC ACGGACGACAAAATAGAACCAATAACTTAATATATAACCAGACATCATTACTAATTGTGACTTTCTATGAATATATAATC CTGCGCATATAAACATAGAAGTTTTCGCTTAACAAATTTAAGACTACATTTCAGTAGTGGAGTGAGCAGTCTGCTTGGTT AGACTGGTGCATTTCTTAAATAAATAGATTGGTCTTTGGCCCTTAATTTTGTTAATTGTACAATCCTCTTCAATGCACGA CTATAGATGAAGTTTATGCTTTCAAACTCAGGGACATGGATCTGATGTGGACTACATATGTCCTGCAAGAGTTTGTTTTG GAGAAGACGTGAATGCATTGCAAGTTTCATGTGGCTTCAATCATACAGGTGCTATACTTGAATATACATAGGTTTGGCTA CTGCGGAATTTCATATTTATCTGCTGCTCAAGAAGAAAATCCAAGATACTTGATTGGTCGCCCCATGCATCTTCTATACA TCACCATATATTATAAATATATACATTTTCCAGCCCATCCAAGAGGCTCTAGGACATTGCGGCATGTCTAAATTGAGGCA TATATTAACCACTGTTGTATTATATCATTCTTTTCATAGGAAAACACCCAGACACATGTCTGCAAATAAAACTTTTTTGA TGTACAAAACTTGTGTAAAGGAAGAGTACTGCTCCATAAATAAAACTTTTTGCATGGGAATGATGGTAGAAATGATTCAT AACTTCTTTGATTTTTATTTTATTTTTTGGCTTAGTTATGGAATAAAAGTACAGGCTTATGTCATTTGCTCTGTTCACCG TGAAAAACGCAATGATATGAGGCTATGTTATGTATCTTGTTAATTGTCACCCTATGTGTAGTCGTAGATGTTTCTGTACC ATAACTGAAAAAGCACCATCCTCTTCTATTTATATGTTGTCTGTGGTACATTGATGTTTGCTTCTGCAATACGTCACTGA AGGCATTTATATTATGTGATTGGGAATTCCAGTAACATGCTACGGCGTTGAGATAGATTTCAATATTATATTGTAGTTCG TTCTTTATGCTCTGTTTGGCTAGCAAGATGGAGGGGAGCAAGTAATACTAAATGACAGTAGTTAGAAGCCTTGACCCTTT TTTACCAGTAAAGCCTATTTGGATGAGAATATTGATGTTTGGAAGTCATTTTACAGAATTGATTTCATACCCAGAAGCAA TTATGGTAGAAGCCCGAGAGTAGTAGTTTATGTGTTGAACATAGTTAATTGTGGT
CDS sequence (LotjaGi1g1v0326500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGCGCCGGAGCTATCTCCGATTGTCGGAACTCCACCGCGGAGCTTCACGTTTAGGGTTAGGGTTTCCGACACGATC GTCCTCGACTCAGCCGGGGAAGCGGTTCGCGGCGCTGTGGGGCAACGGTGATCACGGCAGGTTGGGCCTCGGCAGCTTGG AATCTCAATGGAGGCCCGCCGTTTGCTCCGCCTTCCTCAACCACTCTCCTCAAGCCATTGCTTGCGGCGGTGCTCACACG CTCTTCTTAACAGACAATGGATGCGTTTACGCTGCTGGTCTCAATGATTGTGGACAGCTTGGTACATCGGAGAGTGTGAA CTACTCTCTGGAGCCACTTCAAGTTTTAGGACATGAGAAGAATATTGTGCATATTTCAGCTGGTTATAATCATTCTTGTG CGGTAACAGTGGATGGAGAACTATATATGTGGGGAAAGAATACTAATGGGCAGCTTGGACTCGGAAAAAGAGCTCCAAAC ATAGTTCATTTGCCAACTAAAGTGGAATACTTGGATGGAATCACCATTAAAATGGCTGCTTTGGGTGCTGAGCACTCATT GGTTATTAGTGATGGTGGAGAAGCCTTCAGTTGGGGCATGGGAGTGTCTGGTAGACTTGGTCATGGTCATGAGTCGAGCT TACTAGGATTCTTCAAAACTTACAGTGAGTACACCCCGAGGCTTATAAGAGATCTTGAGGGAATCAAGGTAAAATATGTA GCTGCTGGGATGCTAAGTTCGGCTTGTACTGATGAAAATGGTTCTGTTTTTATATTCGGAGAAAGAGGGATTGACAAGTT GTGTATGAAGGAGACGAGCGATGCAACAAAACCATCCTTGATTAGTAAACTTCCATACTCGGAAGAAGTTTCTTGTGGTG GCTATCACACCTGTGTCTTGACAAATTCCGGTGAGCTTTATACTTGGGGTTCAAATGAAAATGGCTGTCTTGGTATAGGT TCACCAGAAGCCATTCATCTACCTGAAAAGGTGCAAGGTCCTTTCATGAAATCTTCTGTTAGCCAGGTTTCTTGTGGTTG GAAACATACAGCAGCCATTTCTGAAGGGAGAGTTTTCACATGGGGTTGGGGAGGTTCCAATGGGACTTTCTCTGTAGATG GACATTCCTCAGGTGGACAACTGGGACATGGATCTGATGTGGACTACATATGTCCTGCAAGAGTTTGTTTTGGAGAAGAC GTGAATGCATTGCAAGTTTCATGTGGCTTCAATCATACAGGTGCTATACTTGAATATACATAG
Protein sequence (LotjaGi1g1v0326500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWRRSYLRLSELHRGASRLGLGFPTRSSSTQPGKRFAALWGNGDHGRLGLGSLESQWRPAVCSAFLNHSPQAIACGGAHT LFLTDNGCVYAAGLNDCGQLGTSESVNYSLEPLQVLGHEKNIVHISAGYNHSCAVTVDGELYMWGKNTNGQLGLGKRAPN IVHLPTKVEYLDGITIKMAALGAEHSLVISDGGEAFSWGMGVSGRLGHGHESSLLGFFKTYSEYTPRLIRDLEGIKVKYV AAGMLSSACTDENGSVFIFGERGIDKLCMKETSDATKPSLISKLPYSEEVSCGGYHTCVLTNSGELYTWGSNENGCLGIG SPEAIHLPEKVQGPFMKSSVSQVSCGWKHTAAISEGRVFTWGWGGSNGTFSVDGHSSGGQLGHGSDVDYICPARVCFGED VNALQVSCGFNHTGAILEYT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 34 | 212 | 179 | 6.2E-52 | ||
| ProSiteProfiles | 35 | 86 | 52 | 11.268 | ||
| PRINTS | 36 | 52 | 17 | 7.6E-24 | ||
| SUPERFAMILY | 39 | 366 | 328 | 9.59E-80 | ||
| PANTHER | 40 | 104 | 65 | 1.1E-84 | – | |
| PANTHER | 40 | 104 | 65 | 1.1E-84 | – | |
| Pfam | 40 | 83 | 44 | 6.5E-9 | ||
| PRINTS | 70 | 83 | 14 | 7.6E-24 | ||
| PANTHER | 72 | 280 | 209 | 1.1E-84 | – | |
| PANTHER | 72 | 280 | 209 | 1.1E-84 | – | |
| Pfam | 86 | 135 | 50 | 5.8E-9 | ||
| ProSiteProfiles | 87 | 138 | 52 | 14.263 | ||
| PRINTS | 89 | 105 | 17 | 7.6E-24 | ||
| PANTHER | 120 | 366 | 247 | 1.1E-84 | – | |
| PANTHER | 120 | 366 | 247 | 1.1E-84 | – | |
| Pfam | 138 | 189 | 52 | 1.3E-12 | ||
| PRINTS | 139 | 155 | 17 | 7.6E-24 | ||
| ProSiteProfiles | 139 | 192 | 54 | 14.926 | ||
| PRINTS | 179 | 195 | 17 | 7.6E-24 | ||
| ProSiteProfiles | 193 | 253 | 61 | 11.208 | ||
| Pfam | 193 | 243 | 51 | 3.9E-6 | ||
| PRINTS | 195 | 209 | 15 | 7.6E-24 | ||
| Gene3D | 213 | 419 | 207 | 3.8E-43 | ||
| ProSiteProfiles | 254 | 303 | 50 | 10.062 | ||
| PANTHER | 289 | 415 | 127 | 1.1E-84 | – | |
| PANTHER | 289 | 415 | 127 | 1.1E-84 | – | |
| PRINTS | 293 | 311 | 19 | 7.6E-24 | ||
| Pfam | 303 | 353 | 51 | 2.5E-14 | ||
| ProSiteProfiles | 304 | 356 | 53 | 14.886 | ||
| PRINTS | 351 | 372 | 22 | 7.6E-24 | ||
| ProSiteProfiles | 356 | 419 | 64 | 10.765 | ||
| Pfam | 374 | 416 | 43 | 5.6E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0326500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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