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LotjaGi1g1v0327200.1

Overview

Field Value
Gene ID LotjaGi1g1v0327200
Transcript ID LotjaGi1g1v0327200.1
Lotus japonicus genome version Gifu v1.2
Description Cytosolic Fe-S cluster assembly factor NBP35; TAIR: AT5G50960.1 nucleotide binding protein 35; Swiss-Prot: sp|Q8H1Q2|NBP35_ARATH Cytosolic Fe-S cluster assembly factor NBP35; TrEMBL-Plants: tr|A0A126I632|A0A126I632_PRUPE Cytosolic Fe-S cluster assembly factor NBP35; Found in the gene: LotjaGi1g1v0327200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:78098197..78100682) extracted from Lotus japonicus Gifu genome v1.2.

CAGTAGTCCATTACCTGGCTATTAGGAAGAAATAACAGATGTGGGCCTCCATTTGATATATAAGTATATAACAGTCAGAC ACTCAGTTAAAACCCTAATTTTGTAGCAACTAGAGTAAGTATTGTGCAGCCGCATGGAGAGGGAGGGTTAAGATTTCTTG GTTCTGAGTTTACTTTCCAAGGTGATACAGAGAGAGCTACTTCAATGTTTAGAGTCACCTCATCACTCTCCATCTCATCC GCTTTTTGTTTTCTTTCCTTTTTTTTCTATTTCATTTGAAGCCATCAACCAGTATTTCCCTTTCTCATCAAGAATGGACG AATTGGACGAATTCAAGAATAGAAAGAGTGGGGCTGAGAGGGAAGCCATAAGGAGAGTGACAGCAAAAGAAAACTTAGAT CCTTTCTCAACTCAACACTAAAACCAGTGTGCTAGCCTCCAGAAAGAACCCAGTTTTCTTCTTCCTCCAAAATAGTTTTT ACGTTTAAAAAAAACTGAGTTTGCCGGTCGAACCGAGAGGCCGAGTTACCGAGTTTTTGACTAAACCGGCCGAGTCGCAA CGGTTCGTACCGAGTCAGTTACATGGCCGATCGGATGTCTGGCTCGGACCGGTCAAGGGTCCGGTTCACGGTCTGAACGG TCGAACCGGTCGGTCAAGACCGAGTTTTATAACACTGCATAGTACTATTCCCATTTGCATAGGTCACCTAATAAATTAGG CTTCAATATTACCTTATATATTATATATTTCTTTTAAAATAATATTATTTAATTTACAGCGGTAAAATAATATCATTGGA CTACAACCCTTATATGCGTTTCTCATCTTTATTTGTCACATTCTTTGTTCAGATAAATAAACTTTCCCCGCTTTTCTTTA ACAAACAAAAAGAGCTTCCATGGAGAAGGGAGATATTCCTGAGAATGCCAATGACCGTATGTACACATTTAACTTTATTT TTTGAATTTCAATTTTTTGCTTCTATATAATATGATTGATTAATTGTTGTTTTTTCGCCTTTACAGATTGCCCGGGTTCT CAATCTGACTCTGCTGGAAAATCCGATGGATGCCAAGGATGCCCAAATCAGCAAACTTGTGCCACTGGTGCCCCCAAAGG ACCTGACCTTGGTACGTACTCTCCACTGTTATCTTATGCTTTAATTTTATCCCTCATGACCTCCTTCTAATAAGTATCAA GAGCTATTTATTTATATAAGCTTATTATGTGATTCATGAAATAAAAGTTAGCTACCTACAAATTAAATTATTTTATGTTT CCTTTATGTCTGCAGATCTGGCTGCTATAAAAGAAAGGATGGCTACTGTGAAACATAAGATATTGGTCTTATCAGGAAAG GGAGGAGTTGGCAAGAGCACTTTTTCTGCCCAGCTAGCATTTGCTTTAGCGGCAAAGGACTTTGAAGTTGGTCTTCTTGA CATAGACATTTGTGGTCCAAGCATCCCAAAGATGCTTGGCCTAGAAGGTCATGAGCTACACCGGAGCAACTTTGGGTGTG ATCCTGTCTATGTGCAGCCCAACCTTGGTGTCATGTCAATTGGGTTTGTGAATTCTGATCCTGATGATCCTATTATATTA AGAGGTCCACGCAAAAGTTGGCTTATCACTGAGTTTTTAAAAGATGTCTATTGGAATGAACTTGACTTTCTAATTGTTGA TGCTCCACCTGGAACCTCAGATGAACAAATTTCAATTGTTAAGCTCCTTGGTGCCACTGGATTAGATGGTGCAATCATAG TTACTACACCTCAGCAAGTCTCTCTTACTGATGTAAGAAAAGGAGTGAATTTTTGCAAGCAAGCTGGAGTGAAAGTTCTT GGGGTTGTGGAGAATATGAGCGGGTTGTGCCAGCCCGTGATGGATTTCAAGTTTTTGAACTTGGCAGATAACGGTGAGCA GAAAGATGTTACAGAGTGGTTTTTGAAATTCATGAGAGAAAAAACACCTGAAATGGTGAATATGATTGCATGCACTGAAG TATTTGATAGTAGTGGCGGTGGAGCAGTGAAGATGTGCAAGGAAATGATGATACCATTCCTCGGTAAGGTTCCTTTAGAT CCGAAGCTTTGTAAGGCAGCTGAAGAAGGTAGATCCTACTTTGATGATAAGGATTGTGTTGCGAGTGCTTTTGCATTAAA GAATATTATAGACAAGTTGATGGAAACAGTTGAAAGTGTGCCATAGGAATAGGATGCTTCAGAACTATTTTTAATTTATT TTCAACTAGTCAAATTAAGATTCTGCCACTAGCCATTAGTGGATAGGTTAGTTTCTAATCTAAATTTTCAATTATCAGTA GCGGTTTCTAGAATTAAGGAGCATTATCTATTGATGTATTTAAAGTAGTGATTGCATTCAATAAAATTCATCCTCAGTAT AGGCATTCTCTCATTGTTCTCATTATTTGAATTTCTATTCTCATTTTCATGCAGAGTCATGAGAGTATCTGCTCTCTTGC TCCTCA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0327200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGAAGGGAGATATTCCTGAGAATGCCAATGACCATTGCCCGGGTTCTCAATCTGACTCTGCTGGAAAATCCGATGG ATGCCAAGGATGCCCAAATCAGCAAACTTGTGCCACTGGTGCCCCCAAAGGACCTGACCTTGATCTGGCTGCTATAAAAG AAAGGATGGCTACTGTGAAACATAAGATATTGGTCTTATCAGGAAAGGGAGGAGTTGGCAAGAGCACTTTTTCTGCCCAG CTAGCATTTGCTTTAGCGGCAAAGGACTTTGAAGTTGGTCTTCTTGACATAGACATTTGTGGTCCAAGCATCCCAAAGAT GCTTGGCCTAGAAGGTCATGAGCTACACCGGAGCAACTTTGGGTGTGATCCTGTCTATGTGCAGCCCAACCTTGGTGTCA TGTCAATTGGGTTTGTGAATTCTGATCCTGATGATCCTATTATATTAAGAGGTCCACGCAAAAGTTGGCTTATCACTGAG TTTTTAAAAGATGTCTATTGGAATGAACTTGACTTTCTAATTGTTGATGCTCCACCTGGAACCTCAGATGAACAAATTTC AATTGTTAAGCTCCTTGGTGCCACTGGATTAGATGGTGCAATCATAGTTACTACACCTCAGCAAGTCTCTCTTACTGATG TAAGAAAAGGAGTGAATTTTTGCAAGCAAGCTGGAGTGAAAGTTCTTGGGGTTGTGGAGAATATGAGCGGGTTGTGCCAG CCCGTGATGGATTTCAAGTTTTTGAACTTGGCAGATAACGGTGAGCAGAAAGATGTTACAGAGTGGTTTTTGAAATTCAT GAGAGAAAAAACACCTGAAATGGTGAATATGATTGCATGCACTGAAGTATTTGATAGTAGTGGCGGTGGAGCAGTGAAGA TGTGCAAGGAAATGATGATACCATTCCTCGGTAAGGTTCCTTTAGATCCGAAGCTTTGTAAGGCAGCTGAAGAAGGTAGA TCCTACTTTGATGATAAGGATTGTGTTGCGAGTGCTTTTGCATTAAAGAATATTATAGACAAGTTGATGGAAACAGTTGA AAGTGTGCCATAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0327200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEKGDIPENANDHCPGSQSDSAGKSDGCQGCPNQQTCATGAPKGPDLDLAAIKERMATVKHKILVLSGKGGVGKSTFSAQ LAFALAAKDFEVGLLDIDICGPSIPKMLGLEGHELHRSNFGCDPVYVQPNLGVMSIGFVNSDPDDPIILRGPRKSWLITE FLKDVYWNELDFLIVDAPPGTSDEQISIVKLLGATGLDGAIIVTTPQQVSLTDVRKGVNFCKQAGVKVLGVVENMSGLCQ PVMDFKFLNLADNGEQKDVTEWFLKFMREKTPEMVNMIACTEVFDSSGGGAVKMCKEMMIPFLGKVPLDPKLCKAAEEGR SYFDDKDCVASAFALKNIIDKLMETVESVP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 27 27 - –
PANTHER
PTHR23264:SF19
3 347 345 1.1E-146 –
PANTHER
PTHR23264
3 347 345 1.1E-146
IPR019591
Hamap
MF_03038
7 347 341 44.643
IPR028601
MobiDBLite
mobidb-lite
12 27 16 - –
SUPERFAMILY
SSF52540
46 323 278 2.02E-48
IPR027417
Hamap
MF_02040
54 343 290 33.219
IPR019591
Pfam
PF10609
59 246 188 3.6E-75
IPR033756
CDD
cd02037
61 314 254 1.93703E-106 –
ProSitePatterns
PS01215
167 183 17 -
IPR000808

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0016226
Biological process Iron-sulfur cluster assembly The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster.
Subterm of
GO:0051536
Molecular function Iron-sulfur cluster binding Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
Subterm of
GO:0051539
Molecular function 4 iron, 4 sulfur cluster binding Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0327200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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