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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0331600 |
| Transcript ID | LotjaGi1g1v0331600.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial carrier-like protein; TAIR: AT5G51050.1 Mitochondrial substrate carrier family protein; Swiss-Prot: sp|Q66L49|SCMC1_DANRE Calcium-binding mitochondrial carrier protein SCaMC-1; TrEMBL-Plants: tr|I1KP16|I1KP16_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:78818184..78819778) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATGATGAGGAGCTTGCTCACTTTGTGGAGCATGTTGATAAGGATAACAATGGGATTATCACTTTTGAAGAATGGAG AGATTTTCTTCTACTATATCCTCATGAAGCAACAATCGAAAATATATATCACCATTGGGAGAGGGTGTGCCTTGTAGACA TCGGAGAGCAAGCTGTGATTCCTGAAGGCATCAGCAAGCATGTGGACCGGAGCAAATATTTTCTTGCCGGAGGGATAGCA GGTGCTACTTCTCGCACTGTAACCGCTCCTCTTGATCGTCTGAAGGTAGTCTTACAAGTTCAGACCGCACGCGCTTCTAT TGTGCCGGGAGTGATGAAGATATGGAAGCAAGATGGTTTATTAGGGTTTTACCGCGGTAATGGATTGAATATTGTGAAGG TAGCACCAGAAAGTGCCATCAAATTTTACGCCTTTGAAATGCTGAAAAATGTGATCGGGGATGCTCAAGGAAGCAAGTCA GATATTGGTACTTCTGGGAGGCTTCTTGCGGGTGGAATGGCTGGTGGAATTGCACAGGCTGCTATCTATCCACTGGATCT TATCAAAACTAGGTTACAAACTTGCGCCTCTGAAGGGGGAAGGGCTCCTAACCTGGGAACCCTTACAAAGAATATATGGG TTCACGAAGGACCTCGTGCTTTTTACAGAGGGCTTCTTCCATCTCTGATTGGTATGATTCCTTATGCAGGCATTGATCTC ACTGCTTATGATACCTTGAAAGATTTATCCAGGACATATATTCTTAAAGATACTGGTAAGTTACTCATGCAGCCGCTAAA CTTGCTGAATTTATGTGTTCTGAGTAACTGATTTGTTTAGTTGATTGACTCTCTTGAAAATTTTCCCTTGAAGAGTGAAC CCTTTTATTATTTTTTCTCCTACACAGAACCTGGTCCTCTCGTGCAACTAGGATGTGGGACTATTTCTGGAGCTCTTGGA GCCACTTGTGTCTATCCACTGCAGGTTATTCGTACAAGGTATAATGTTATCTGTATTCAGCATGTTTGGAATCACGTTCA AATCTTCCAGAATCAATTCAGCTACCACAAAAGCTTCTAGGTGTATGTTTGGATACACGGTGAAAAACCACAGTGGACAT AAGCAATTTTCCTTAGCTTTTGTGGCTGTCCATCGTGATTTTGGATCCACCGTGGTGTATCCAAACATGCCCGAGGAGCA GCTTCTCCTTTCAAAGTGAAAATCTACCGTGTATCCAAACATTCACATTACTCTTGTTTCTGCACTCTTTCCACCACGAA AGAAATTATGGGAGTGGAGGATAGTGTCTCATTTGTGGTCTTTGCTGACATTACATTTCAGACATGGTTTTCTCATTGTT ATGTTATGGATGTTCTTTGCTGACATTTATCATCCTTTTTAGACTGCAGGCACAACCTTCGAACGATACCAGTGCTTACA AGGGGATGTCTGATGCATTTTGGAAAACATTTCAGCGCGAAGGCTTTAGAGGTTTCTACAAAGGAATCCTTCCAAATCTA CTCAAAGTTGTGCCTGCTGCCAGCATTACTTATATGGTCTATGAAAATATGAAAAAGAATCTAGAGCTAGAATAG
CDS sequence (LotjaGi1g1v0331600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGATGAGGAGCTTGCTCACTTTGTGGAGCATGTTGATAAGGATAACAATGGGATTATCACTTTTGAAGAATGGAG AGATTTTCTTCTACTATATCCTCATGAAGCAACAATCGAAAATATATATCACCATTGGGAGAGGGTGTGCCTTGTAGACA TCGGAGAGCAAGCTGTGATTCCTGAAGGCATCAGCAAGCATGTGGACCGGAGCAAATATTTTCTTGCCGGAGGGATAGCA GGTGCTACTTCTCGCACTGTAACCGCTCCTCTTGATCGTCTGAAGGTAGTCTTACAAGTTCAGACCGCACGCGCTTCTAT TGTGCCGGGAGTGATGAAGATATGGAAGCAAGATGGTTTATTAGGGTTTTACCGCGGTAATGGATTGAATATTGTGAAGG TAGCACCAGAAAGTGCCATCAAATTTTACGCCTTTGAAATGCTGAAAAATGTGATCGGGGATGCTCAAGGAAGCAAGTCA GATATTGGTACTTCTGGGAGGCTTCTTGCGGGTGGAATGGCTGGTGGAATTGCACAGGCTGCTATCTATCCACTGGATCT TATCAAAACTAGGTTACAAACTTGCGCCTCTGAAGGGGGAAGGGCTCCTAACCTGGGAACCCTTACAAAGAATATATGGG TTCACGAAGGACCTCGTGCTTTTTACAGAGGGCTTCTTCCATCTCTGATTGGTATGATTCCTTATGCAGGCATTGATCTC ACTGCTTATGATACCTTGAAAGATTTATCCAGGACATATATTCTTAAAGATACTGAACCTGGTCCTCTCGTGCAACTAGG ATGTGGGACTATTTCTGGAGCTCTTGGAGCCACTTGTGTCTATCCACTGCAGGTTATTCGTACAAGACTGCAGGCACAAC CTTCGAACGATACCAGTGCTTACAAGGGGATGTCTGATGCATTTTGGAAAACATTTCAGCGCGAAGGCTTTAGAGGTTTC TACAAAGGAATCCTTCCAAATCTACTCAAAGTTGTGCCTGCTGCCAGCATTACTTATATGGTCTATGAAAATATGAAAAA GAATCTAGAGCTAGAATAG
Protein sequence (LotjaGi1g1v0331600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDEELAHFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVDIGEQAVIPEGISKHVDRSKYFLAGGIA GATSRTVTAPLDRLKVVLQVQTARASIVPGVMKIWKQDGLLGFYRGNGLNIVKVAPESAIKFYAFEMLKNVIGDAQGSKS DIGTSGRLLAGGMAGGIAQAAIYPLDLIKTRLQTCASEGGRAPNLGTLTKNIWVHEGPRAFYRGLLPSLIGMIPYAGIDL TAYDTLKDLSRTYILKDTEPGPLVQLGCGTISGALGATCVYPLQVIRTRLQAQPSNDTSAYKGMSDAFWKTFQREGFRGF YKGILPNLLKVVPAASITYMVYENMKKNLELE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 56 | 56 | 5.6E-11 | – | |
| SUPERFAMILY | 1 | 46 | 46 | 1.16E-6 | ||
| ProSiteProfiles | 1 | 36 | 36 | 12.561 | ||
| PANTHER | 1 | 351 | 351 | 1.2E-187 | – | |
| PANTHER | 1 | 351 | 351 | 1.2E-187 | – | |
| ProSitePatterns | 14 | 26 | 13 | - | ||
| Gene3D | 65 | 351 | 287 | 1.3E-92 | ||
| SUPERFAMILY | 66 | 344 | 279 | 1.31E-79 | ||
| ProSiteProfiles | 68 | 151 | 84 | 19.788 | ||
| Pfam | 72 | 153 | 82 | 3.2E-22 | ||
| PRINTS | 73 | 86 | 14 | 6.8E-29 | ||
| PRINTS | 86 | 100 | 15 | 6.8E-29 | ||
| PRINTS | 126 | 146 | 21 | 6.8E-29 | ||
| Pfam | 162 | 250 | 89 | 6.2E-22 | ||
| ProSiteProfiles | 162 | 249 | 88 | 20.454 | ||
| PRINTS | 177 | 195 | 19 | 6.8E-29 | ||
| PRINTS | 222 | 240 | 19 | 6.8E-29 | ||
| ProSiteProfiles | 260 | 348 | 89 | 25.838 | ||
| Pfam | 261 | 349 | 89 | 6.4E-25 | ||
| PRINTS | 269 | 291 | 23 | 6.8E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP transmembrane transporter activity | Enables the transfer of ATP, adenosine triphosphate, from one side of a membrane to the other. | ||
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0331600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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