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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0331600 |
| Transcript ID | LotjaGi1g1v0331600.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial carrier-like protein; TAIR: AT5G51050.1 Mitochondrial substrate carrier family protein; Swiss-Prot: sp|Q8BMD8|SCMC1_MOUSE Calcium-binding mitochondrial carrier protein SCaMC-1; TrEMBL-Plants: tr|A0A072TU61|A0A072TU61_MEDTR Substrate carrier family protein; Found in the gene: LotjaGi1g1v0331600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:78818184..78821252) extracted from Lotus japonicus Gifu genome v1.2.
TTAAATTCAATGCTCCAAATGGGTATCTCAGAATTCATTGGGATTGTTTAAAGATCGAAGGTGAATATTGAATAGCATGG GTAGTGGCAACAACAACAACAAGAACCACACGATGGATCATGTTCTTCTGGCATTGGGGGAAACGAGAGAAGAGAGAGAT GTTCGAATCCGCAGCTTGTTCAATTTCTTCGATGGGAAGAACAAGGAGTATTTGGATTATGGCCAGATAGAATCAGGGTT GTCAGCACTGAAAATCCCACCAGAGTACAAGTATGCGAGGGAGCTTTTCAAGGTGTGTGATTCCAATAGTGATGGCAGGG TGACTTATCATGAGTTCCGCAGGTACATGGATGATAAGGAATTGGAGCTTTACCGCATCTTTCAAGCCATTGATGTTGAG CATAGTGGCAGCATTCTCCCTGAAGAGCTCTGGGATGCACTTGTTAAAGCTGGTGGTGTATTCTACTCTTTCTCCAATTT ACATATCTCTGTTCCTTGCTATAGGCTACTTGTTCATAGTTTTGTTATTTTCTCCTGCTACATCAACTTTTTAGTTATCC TCATAGCAGTGATTGCCTTCATGTTTGTGCAGGATCATTTTATTTCCAAGTAACTGGTCACCTTAATTGTTTACTTGTAA ATAGGAGATTGGTTGAAGTTTTAGAAATAGTAATCATTTAATGAAAAATAGTGGTTCTCAGTTAGCCATCCCTGCTTTCT CATCAAAAAGTTGTTTTATGCGAGTGGCTGTCTATCCTATCCCAAGGTTAAACAATCCTAACTTAGGTGGATTATTAATT CTATCTATATAGAAATTGAAGGAAAAGTTTAAATTTTAAGTTATTTTGATTAGACTGGTCTACACTTATTTTGATCAGAC TGGTCCATAAGTTTTAAGAAGCAATCATTTAAGAATTATTCTTTAAGTAATTAAAAATATTTAATGTAAATCTTAATCAT TGTGTTTTCTTAGCAAGACATTTTTTTTTGTTTAAACTTTTTAGCTTTTCAAAATATTTAATAGGATCACTATAAACAGG TTTGTGGAATCTACAGTTTGGAGAAGGTTTTTTCACTTTTAATAGGACTTTGTAGCCAGCTCTGAAAGTTTTTTCACCTT CAGATATCTTATATTCCTGCACAATTTTAGTGAACTCTTCTTGATATGTGTCTATTTTGCTGATGTATTGTTGCATTTTT TGTATAATTTTTTGTTTGGGGTTATTTCTTTGAAACTACATGATGCTTGGGATTTGAGAAGCCCGGTTGAACCTTTGATG GTGGATGCTGTATTGTTTTTGTTATTCTTTTGCTTGCTTAGTTTCTTGTGTGCAATAATCTATCTGGCCTCTGCCCATTT AGTGAATATTGAAGATGGTATTCTTTTATCTTTTTTTGTGGAGGCTTTTTCCATTAAATTGTTTTGCTTTTCCATATCAT AAGCTATTGCAGCTTCAATGCTGCAGGGATTGAAATGGATGATGAGGAGCTTGCTCACTTTGTGGAGCATGTTGATAAGG ATAACAATGGGATTATCACTTTTGAAGAATGGAGAGATTTTCTTCTACTATATCCTCATGAAGCAACAATCGAAAATATA TATCACCATTGGGAGAGGGTGTGCCTTGTAGACATCGGAGAGCAAGCTGTGATTCCTGAAGGCATCAGCAAGCATGTGGA CCGGAGCAAATATTTTCTTGCCGGAGGGATAGCAGGTGCTACTTCTCGCACTGTAACCGCTCCTCTTGATCGTCTGAAGG TAGTCTTACAAGTTCAGACCGCACGCGCTTCTATTGTGCCGGGAGTGATGAAGATATGGAAGCAAGATGGTTTATTAGGG TTTTACCGCGGTAATGGATTGAATATTGTGAAGGTAGCACCAGAAAGTGCCATCAAATTTTACGCCTTTGAAATGCTGAA AAATGTGATCGGGGATGCTCAAGGAAGCAAGTCAGATATTGGTACTTCTGGGAGGCTTCTTGCGGGTGGAATGGCTGGTG GAATTGCACAGGCTGCTATCTATCCACTGGATCTTATCAAAACTAGGTTACAAACTTGCGCCTCTGAAGGGGGAAGGGCT CCTAACCTGGGAACCCTTACAAAGAATATATGGGTTCACGAAGGACCTCGTGCTTTTTACAGAGGGCTTCTTCCATCTCT GATTGGTATGATTCCTTATGCAGGCATTGATCTCACTGCTTATGATACCTTGAAAGATTTATCCAGGACATATATTCTTA AAGATACTGGTAAGTTACTCATGCAGCCGCTAAACTTGCTGAATTTATGTGTTCTGAGTAACTGATTTGTTTAGTTGATT GACTCTCTTGAAAATTTTCCCTTGAAGAGTGAACCCTTTTATTATTTTTTCTCCTACACAGAACCTGGTCCTCTCGTGCA ACTAGGATGTGGGACTATTTCTGGAGCTCTTGGAGCCACTTGTGTCTATCCACTGCAGGTTATTCGTACAAGGTATAATG TTATCTGTATTCAGCATGTTTGGAATCACGTTCAAATCTTCCAGAATCAATTCAGCTACCACAAAAGCTTCTAGGTGTAT GTTTGGATACACGGTGAAAAACCACAGTGGACATAAGCAATTTTCCTTAGCTTTTGTGGCTGTCCATCGTGATTTTGGAT CCACCGTGGTGTATCCAAACATGCCCGAGGAGCAGCTTCTCCTTTCAAAGTGAAAATCTACCGTGTATCCAAACATTCAC ATTACTCTTGTTTCTGCACTCTTTCCACCACGAAAGAAATTATGGGAGTGGAGGATAGTGTCTCATTTGTGGTCTTTGCT GACATTACATTTCAGACATGGTTTTCTCATTGTTATGTTATGGATGTTCTTTGCTGACATTTATCATCCTTTTTAGACTG CAGGCACAACCTTCGAACGATACCAGTGCTTACAAGGGGATGTCTGATGCATTTTGGAAAACATTTCAGCGCGAAGGCTT TAGAGGTTTCTACAAAGGAATCCTTCCAAATCTACTCAAAGTTGTGCCTGCTGCCAGCATTACTTATATGGTCTATGAAA ATATGAAAAAGAATCTAGAGCTAGAATAG
CDS sequence (LotjaGi1g1v0331600.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAGTGGCAACAACAACAACAAGAACCACACGATGGATCATGTTCTTCTGGCATTGGGGGAAACGAGAGAAGAGAG AGATGTTCGAATCCGCAGCTTGTTCAATTTCTTCGATGGGAAGAACAAGGAGTATTTGGATTATGGCCAGATAGAATCAG GGTTGTCAGCACTGAAAATCCCACCAGAGTACAAGTATGCGAGGGAGCTTTTCAAGGTGTGTGATTCCAATAGTGATGGC AGGGTGACTTATCATGAGTTCCGCAGGTACATGGATGATAAGGAATTGGAGCTTTACCGCATCTTTCAAGCCATTGATGT TGAGCATAGTGGCAGCATTCTCCCTGAAGAGCTCTGGGATGCACTTGTTAAAGCTGGGATTGAAATGGATGATGAGGAGC TTGCTCACTTTGTGGAGCATGTTGATAAGGATAACAATGGGATTATCACTTTTGAAGAATGGAGAGATTTTCTTCTACTA TATCCTCATGAAGCAACAATCGAAAATATATATCACCATTGGGAGAGGGTGTGCCTTGTAGACATCGGAGAGCAAGCTGT GATTCCTGAAGGCATCAGCAAGCATGTGGACCGGAGCAAATATTTTCTTGCCGGAGGGATAGCAGGTGCTACTTCTCGCA CTGTAACCGCTCCTCTTGATCGTCTGAAGGTAGTCTTACAAGTTCAGACCGCACGCGCTTCTATTGTGCCGGGAGTGATG AAGATATGGAAGCAAGATGGTTTATTAGGGTTTTACCGCGGTAATGGATTGAATATTGTGAAGGTAGCACCAGAAAGTGC CATCAAATTTTACGCCTTTGAAATGCTGAAAAATGTGATCGGGGATGCTCAAGGAAGCAAGTCAGATATTGGTACTTCTG GGAGGCTTCTTGCGGGTGGAATGGCTGGTGGAATTGCACAGGCTGCTATCTATCCACTGGATCTTATCAAAACTAGGTTA CAAACTTGCGCCTCTGAAGGGGGAAGGGCTCCTAACCTGGGAACCCTTACAAAGAATATATGGGTTCACGAAGGACCTCG TGCTTTTTACAGAGGGCTTCTTCCATCTCTGATTGGTATGATTCCTTATGCAGGCATTGATCTCACTGCTTATGATACCT TGAAAGATTTATCCAGGACATATATTCTTAAAGATACTGAACCTGGTCCTCTCGTGCAACTAGGATGTGGGACTATTTCT GGAGCTCTTGGAGCCACTTGTGTCTATCCACTGCAGGTTATTCGTACAAGACTGCAGGCACAACCTTCGAACGATACCAG TGCTTACAAGGGGATGTCTGATGCATTTTGGAAAACATTTCAGCGCGAAGGCTTTAGAGGTTTCTACAAAGGAATCCTTC CAAATCTACTCAAAGTTGTGCCTGCTGCCAGCATTACTTATATGGTCTATGAAAATATGAAAAAGAATCTAGAGCTAGAA TAG
Protein sequence (LotjaGi1g1v0331600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSGNNNNKNHTMDHVLLALGETREERDVRIRSLFNFFDGKNKEYLDYGQIESGLSALKIPPEYKYARELFKVCDSNSDG RVTYHEFRRYMDDKELELYRIFQAIDVEHSGSILPEELWDALVKAGIEMDDEELAHFVEHVDKDNNGIITFEEWRDFLLL YPHEATIENIYHHWERVCLVDIGEQAVIPEGISKHVDRSKYFLAGGIAGATSRTVTAPLDRLKVVLQVQTARASIVPGVM KIWKQDGLLGFYRGNGLNIVKVAPESAIKFYAFEMLKNVIGDAQGSKSDIGTSGRLLAGGMAGGIAQAAIYPLDLIKTRL QTCASEGGRAPNLGTLTKNIWVHEGPRAFYRGLLPSLIGMIPYAGIDLTAYDTLKDLSRTYILKDTEPGPLVQLGCGTIS GALGATCVYPLQVIRTRLQAQPSNDTSAYKGMSDAFWKTFQREGFRGFYKGILPNLLKVVPAASITYMVYENMKKNLELE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 20 | 194 | 175 | 5.48E-35 | ||
| PANTHER | 20 | 479 | 460 | 5.4E-245 | – | |
| PANTHER | 20 | 479 | 460 | 5.4E-245 | – | |
| ProSiteProfiles | 26 | 61 | 36 | 6.758 | ||
| Gene3D | 29 | 106 | 78 | 2.1E-12 | – | |
| ProSiteProfiles | 62 | 97 | 36 | 11.975 | ||
| SMART | 66 | 94 | 29 | 0.013 | ||
| Pfam | 69 | 89 | 21 | 0.076 | ||
| ProSitePatterns | 75 | 87 | 13 | - | ||
| SMART | 97 | 125 | 29 | 7.1 | ||
| Pfam | 97 | 155 | 59 | 7.6E-9 | ||
| ProSiteProfiles | 98 | 128 | 31 | 8.432 | ||
| Gene3D | 109 | 184 | 76 | 2.1E-16 | – | |
| ProSiteProfiles | 129 | 164 | 36 | 12.979 | ||
| SMART | 133 | 161 | 29 | 1.2 | ||
| ProSitePatterns | 142 | 154 | 13 | - | ||
| Gene3D | 193 | 479 | 287 | 3.3E-92 | ||
| SUPERFAMILY | 194 | 472 | 279 | 3.53E-79 | ||
| ProSiteProfiles | 196 | 279 | 84 | 19.788 | ||
| Pfam | 200 | 281 | 82 | 5.4E-22 | ||
| PRINTS | 201 | 214 | 14 | 3.3E-28 | ||
| PRINTS | 214 | 228 | 15 | 3.3E-28 | ||
| PRINTS | 254 | 274 | 21 | 3.3E-28 | ||
| ProSiteProfiles | 290 | 377 | 88 | 20.454 | ||
| Pfam | 290 | 378 | 89 | 1.1E-21 | ||
| PRINTS | 305 | 323 | 19 | 3.3E-28 | ||
| PRINTS | 350 | 368 | 19 | 3.3E-28 | ||
| ProSiteProfiles | 388 | 476 | 89 | 25.838 | ||
| Pfam | 389 | 477 | 89 | 1.1E-24 | ||
| PRINTS | 397 | 419 | 23 | 3.3E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP transmembrane transporter activity | Enables the transfer of ATP, adenosine triphosphate, from one side of a membrane to the other. | ||
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0331600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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