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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0332900 |
| Transcript ID | LotjaGi1g1v0332900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD40 repeat-containing protein; TAIR: AT5G50970.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q42384|PRL1_ARATH Protein pleiotropic regulatory locus 1; TrEMBL-Plants: tr|A0A151SY43|A0A151SY43_CAJCA Putative WD repeat-containing protein alr2800 family; Found in the gene: LotjaGi1g1v0332900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:79060653..79066099) extracted from Lotus japonicus Gifu genome v1.2.
CCAATTCAACTTTTCCCCCAATGGAATTCAACACATCGCGCCTGGGAGGGGAACAGACAAACAAGAGAAGAAGCACGTTT CTCGAACCATCCCCAACCAAACCAGTTTCGGTCGGAACCGCCACACACAAACGACGGCGACGACGCAACCACCGTCCGTT CCCGAAACCGCACCGTAATCGGCGAATACACCGGCAAGTGATGACCGATTAAGCGGCGGCAAAACCAGACGAAAATGGAT GAACAATACGAAAGCACCACCAGCAGGGAGGAACAAGAAGAAGCATTAATCGCTCTCATCGAACACCGCACCCATGAAGT CAAAAACATCCGCAAACGCATCGCTTATTACCAATCTCAGGTCACTAGCTTGTACTACTACTTCCCTTTCAATGTCATGC TTTCACATTTCATGGGTATCTTGGTTTTTCTTGTGATATGTACAAAATTATCATGATTTGTTCTGAAGTGAAGATTTGTA GTGTGTTATAGCTACTAAGGTGTAGATTTTATTGGGTTATTGATGTAAGATTGTGAATAATATGTGCAGCTTGAGGAGTC AGAGAAGAGGTTGCATGATTCTGAATCGAAATTGGCTCGCCTTCGCGGTCCGGCCAATGCGGTTTCGTCTAGGAAAAATG ATAGGTTGGATAATAATGGGATTAAATCGGTGAAGATGGAGCGGAGGTCGAGCAGTCCTGTTGATAGGAATGAAGGTTCT TCTAAGAACCATCATCAATCTCAATCTAAATCTGAGCTTGTTATTCCTGCGGTGGCTCCGAAAGTTTCGCTACTTACAAT GTTGCAAAAGTCTGCTGCAAAAAGTGTGTTGAGTTCCGGTTCGGAAGCTAGTGGAGGAGGGAAAGCTGAGAAGGCTCTTG CTAGAGTTTCTAGTGAGCAGCAGAACACTGAAGTTAAGGAAAGGGCGGCAAAAAGGAAATTTGGTGAGGGATTCCCCTTT TATTGGGGGAAAAAGCTTTTATTGTTTGTAAATTTTGTTTGTTTGTAGTGAGTGGCTTTCAGTTTTGTTTTTACTCGTAT TGGTTTTGAATATGGACAATATCTAAGGTTATGTGTTGTGCTTCTGTTCAGATTTTGTGTCAGCTATTGGCTTGTTGCGG CCCTCTTTATTTCAAGGTCACTTTTGGTTGTAATTAAGTTTCATATGATTTTTTGTTTGCTTTTCAGAGGAGAAAGAACA CAAGGAATTGATTCCTATGATATGCAAGAGTTCTTCACTGAGCTTGGTGCACTGTCAATCAAGCAACCACATCTCAAGTC AACACAAGAGGAAATTGCGGAGTATTGCTCTGTGTCCCGTGAATGATCAGCTTTTTGTGACCAGGTAATAGAGTCATTTC ATTTCTAAAAGCCTTTCAGCAATTTGTTGAAAATTGACTCATTATGAACAATTAAAATTGCGCTTTTCTTAAAAGAAAAC AGAAGTTCTTTGTATTGCTTATCTGTTTTCATCTCCCAGTTTCTGGCAATGATGATGGAAGGTATGGGGTCAAATGTTTT CAAGAAGAACAAAAAAAGCTTAAATTGAAAAAATGATGGATCACTTATTAGGCTAATAAATACAATTAATTTGTTGGAAT TATAATTAAACTTACTAAGACTTTATTGTATTTTAAAATTACCAGGTGAGTACAAGGATATAATTGAGAAAATGATAATT AACGTTATCATAAACTACTATTTGGACTGATAAATCGGAACAGATTTTCTTCTCACTCTGGATACATAAATGGGAATGGA GGTAGTGTAAGAAAATAATATCTAAGAAAGCATAAGCCATATTTAACTCTGAATGTGCTTTACTATGAAGATTTATGCAC AGTATGGAATCTTCTGCAAACCTAATCATATCATTCCAAGGAGGGTCTGTTTATCAATAATAGCAAGTTTGTAAAAGGTG GTACATATCTTTTTTCTGACATGACCCTTTGAGGTTCAGAGTTTAGAATTAGAGTGCATTTTAATAGTCAGATATCTGAC TATGTTAGTATAATGACACCATAACTTGTGCCAATTTTTTGTCATCCTCAACTTGAATTTGTCTCTTATATATGTTTCTG GCAATACAAGTTTGATATATTCTTTCTAGTCTGATTCTAGCTACTTTTTGGGAATTCTTGCAGTGCTTTGGATGGAGTGG TCAACATGTGGCAAGTTCAAGCTAAGGGGTAAGCCATAATTTGTCTTTTTGGTGGCATCTTGGAGAGTTTCTTTTTTTTT TTTGGGTGACAATGTTAGTCGTAGACTTGCAAAAGATAATATTTCAAAAAGGGAGTCTGCCTAATACTTATCAGGTTTTT GCACAAGCATAAGTCTATCTGTACTTGCTATGGTGGCTCCTTCCACATTTTCTTTATCCGTCTTCCACTCCCTCAATATG AAGTTTTGGCAAACTTTAAAAGTCAACCAAATGCATCAGAGCTCCTGCTATGCGCAGGGTCCGGGGAAGGGTCCAACCAC TTGGTCTTTTGTATGCAGCCTTACTCTGTTTTTTTAGACAAGTGGTTGTTTCCAGGACTTGAACCCGTGACCTCAATCAC ATGACAACAATTTACTGTTGCGCCTAGGCTCCCCTTCGGCGTAGAAAACTCTGAACTTCAAAATACTTTTCAAGTTTTAT TGTTCTTTGTTACCTCCTGAATTTCTTTCCTACAATTTAATTGTAAATTTGACTATATTATGATTCTTTCCTCTATCGGT TTCCTCAGTGTACATGATGTTTTGGGGTACAAAACATTTTAATTTAACTTTAAAATATTTTAAAGTCAGGCCCCCACCCA TGTGATCTAATTCACGTTTTCTTCCATCTACAATTTTGCAGATCAGGAGCCTCTCGTCTTAGCTCTACTGATTGTGTATC TCCAAAGCAAAGGAGATGGCCAGAAGATATAACTTGGCACCCAGAAGGGCACAGCCTATTTTCAGTATACACTGCTGATA GTGGAGACTCTCAAGTATCAGTTACCAATCTGAATAAATCAAAAGGGGTAAGATTTCTTACACCAATATATTGGCATCAA AGAAAAACTTTGTATTTGGGTTTCTTTTGTTGTTGGTTGCTCTTGATATATGAAAAATATGTATGTAACTGACAGGCAGA ACGTGTAAAATTCTTAGAGGATAAGCCTCATGTTAAGGGAATTATCAATGGTATTGTCTTCATGCCCTGGGAAAACACAT GTTTTGTTACTGGCGGAAGTGACCATGCTGTTGTACTTTGGAGTGAGCAGGATGGTGAGAACACATGGAAGCCAAAAGTA TTGCACAGAAATCTTCATTCTTCTGCTGTCATGGGAGTTGCTGGTATGCAGCAGAAGCAGATTGTGTTATCTGCTGGTGC AGACAGGAGAATATTTGGGTTTGATGTTCGCGTAGGAAGAGCAGATTTCAAACATCAGGTTGATAGTAAATGCATGAGTG TCCTGCCTAATCCATGTGATTTCAACTTATTCATGGTTCAAACAGGGTAAATAACAGCTACTTTGAAGTCCCATTTGTTT ATTTAGTTTCCGCAAGCTTTACCGTTTTATGCAGATTTTTTAACATGCCTCAAATTTCAAGTATGTTTGTTGAATTTTTA TTTTAGTGAAAATCAAGTATGTTTGTTGAAAACAGTAATATAATTTTTAATTCAAAAGTTTGATCCCCAGATGAAATTTC TTGCATTATTACTTTGTTCTCTGAAGTGCAATAGAACTGTCCTCATCACTTAAGTTGTCAGTAAACTGTAGGCAAATGGA AACAAAGGGATTTTGATTTACCCTTACTTGAAACCCCCCCACTCCTGGATGTGGTGCACAACCACCACTCTGATGTTGTG CCTCTTAAATCGTCTAATTATGGATGGCATGGAAATATTGTTAGGCATACCACAGCATAATGAGGAATTTTTTTGTGGGT TGTTGTGCTCATCCTTGTCCTACGCACTTCGTTCTATCCACATGAAGAGAAATGATAGCAAGATACTCTTTTTGACATGC TCTTGAACACTCTTTATGATTGGTTCATTTTTCTAAAGGTCATTTTAGTTGCTTTAAAAATTTATCACTTTATTAAACTG TTATTCACTTTTAAGAATGAACCAATAAAAAATAGTATGTTCAAGAGTGTGTCAAAAAGAGTGTATTGCTAGCATTTCTC ATTCATGAAATATGCTTGAAATATGAGGATGAAGTAATCTTCAATTAGCTGGTGTCATGTGGGCCTGTCTTCTGCTTCGT AAGCAGGGAGCTGAGGATAAGATAATGAGGCAATTGGCCCATATCTCAGCTGGTGCATTTCTCAGACTATTCAATCCAGA GAAAAATAAATCCATCAAGGGTTCAATGTAAGAATGAGCATATGTGCTTCAACTGTTCTAGTAAAGAGCTGCAAATTCCC TTCTGATATTCATACTCTTGGTTGGGATGTTGGTTTAAACCCTATGCTACTTGACAATGATTATGATTGATATATCCTAC ATTGAATTCAGTGCAAGTGTCTTCCTTTAAGATGGGAGAATAATAAGTCTTCCTTTAAGATGGGAGAATAATAATACTAT GTTGATTGTTTCAATTTAAGATTTTGAGACCAAGATATTCTTGGTATTCTTCTGTTTGCTTTGAAGTTTGTTACATAGAC TACTTTTCTTTCTCTCAGGACTCATGAGAAGCAGCTTCGATTATACGATATTAGACTGAGGCAGACAGAACTTCATGCTT TTGGATGGAAGCAAGAAAGCAGCGATTCTCAGTCAGCTCTGATAAACCAGACTTGGTCTCCAGATGGGCTTTACATAGCA TCTGGTTCAGTGGATCCTGTGATTCACATCTTTGATATAAGATATAATTCTCACAAACCTTCGCAATCTATAAGAGCTCA TCAGAAACGAGTCTTTAAAGCCATGTGGCTTCAGTCTATTCCTCTTCTCATTTCCATATCATCTGATCTCAACATTGGAC TACACAAGATTTACTAGATAATCATCTCTTGCCAATGACTGACCACCTCTGCATAAGTAGTGTGTTCTCCATGATGGTTT TGGTGCTGAATATTGAATTACTTAACATGGAATTTCTGAACTTGAGTTTTCATATATGACCTGTGGAATTTTGTGCATTG CAAGTTGCAACGAGTAATTTGTATGGAGCGGGAAATTAGGAAACTTTTGGTTGACACGATGTATTTTGCAGTTGCTTTTG GTTGAGAAGAAAATGAGAGGACAAGCATTCTTTTATCTCTGATATCAATCAAGTTCATTCCTCATATTTCTTGCATGTGT ATGTTTCTTCTTTTCTTTTGGATTATTTCCTCATCAAACACACTAGGAATTGAAGAGCACGAGATGCAATGTTTTCTTCG ATTAGGAGCACGAAAACCTTGTGGGTGGACCATTACTTTTCTTTCTCATGACACTTTTTCTTCCCTTTCCTAACAATAGA AAAATCT
CDS sequence (LotjaGi1g1v0332900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGAACAATACGAAAGCACCACCAGCAGGGAGGAACAAGAAGAAGCATTAATCGCTCTCATCGAACACCGCACCCA TGAAGTCAAAAACATCCGCAAACGCATCGCTTATTACCAATCTCAGCTTGAGGAGTCAGAGAAGAGGTTGCATGATTCTG AATCGAAATTGGCTCGCCTTCGCGGTCCGGCCAATGCGGTTTCGTCTAGGAAAAATGATAGGTTGGATAATAATGGGATT AAATCGGTGAAGATGGAGCGGAGGTCGAGCAGTCCTGTTGATAGGAATGAAGGTTCTTCTAAGAACCATCATCAATCTCA ATCTAAATCTGAGCTTGTTATTCCTGCGGTGGCTCCGAAAGTTTCGCTACTTACAATGTTGCAAAAGTCTGCTGCAAAAA GTGTGTTGAGTTCCGGTTCGGAAGCTAGTGGAGGAGGGAAAGCTGAGAAGGCTCTTGCTAGAGTTTCTAGTGAGCAGCAG AACACTGAAGTTAAGGAAAGGGCGGCAAAAAGGAAATTTGAGGAGAAAGAACACAAGGAATTGATTCCTATGATATGCAA GAGTTCTTCACTGAGCTTGGTGCACTGTCAATCAAGCAACCACATCTCAAGTCAACACAAGAGGAAATTGCGGAGTATTG CTCTGTGTCCCGTGAATGATCAGCTTTTTGTGACCAGTGCTTTGGATGGAGTGGTCAACATGTGGCAAGTTCAAGCTAAG GGATCAGGAGCCTCTCGTCTTAGCTCTACTGATTGTGTATCTCCAAAGCAAAGGAGATGGCCAGAAGATATAACTTGGCA CCCAGAAGGGCACAGCCTATTTTCAGTATACACTGCTGATAGTGGAGACTCTCAAGTATCAGTTACCAATCTGAATAAAT CAAAAGGGGCAGAACGTGTAAAATTCTTAGAGGATAAGCCTCATGTTAAGGGAATTATCAATGGTATTGTCTTCATGCCC TGGGAAAACACATGTTTTGTTACTGGCGGAAGTGACCATGCTGTTGTACTTTGGAGTGAGCAGGATGGTGAGAACACATG GAAGCCAAAAGTATTGCACAGAAATCTTCATTCTTCTGCTGTCATGGGAGTTGCTGGTATGCAGCAGAAGCAGATTGTGT TATCTGCTGGTGCAGACAGGAGAATATTTGGGTTTGATGTTCGCGTAGGAAGAGCAGATTTCAAACATCAGGTTGATAGT AAATGCATGAGTGTCCTGCCTAATCCATGTGATTTCAACTTATTCATGGTTCAAACAGGGACTCATGAGAAGCAGCTTCG ATTATACGATATTAGACTGAGGCAGACAGAACTTCATGCTTTTGGATGGAAGCAAGAAAGCAGCGATTCTCAGTCAGCTC TGATAAACCAGACTTGGTCTCCAGATGGGCTTTACATAGCATCTGGTTCAGTGGATCCTGTGATTCACATCTTTGATATA AGATATAATTCTCACAAACCTTCGCAATCTATAAGAGCTCATCAGAAACGAGTCTTTAAAGCCATGTGGCTTCAGTCTAT TCCTCTTCTCATTTCCATATCATCTGATCTCAACATTGGACTACACAAGATTTACTAG
Protein sequence (LotjaGi1g1v0332900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDEQYESTTSREEQEEALIALIEHRTHEVKNIRKRIAYYQSQLEESEKRLHDSESKLARLRGPANAVSSRKNDRLDNNGI KSVKMERRSSSPVDRNEGSSKNHHQSQSKSELVIPAVAPKVSLLTMLQKSAAKSVLSSGSEASGGGKAEKALARVSSEQQ NTEVKERAAKRKFEEKEHKELIPMICKSSSLSLVHCQSSNHISSQHKRKLRSIALCPVNDQLFVTSALDGVVNMWQVQAK GSGASRLSSTDCVSPKQRRWPEDITWHPEGHSLFSVYTADSGDSQVSVTNLNKSKGAERVKFLEDKPHVKGIINGIVFMP WENTCFVTGGSDHAVVLWSEQDGENTWKPKVLHRNLHSSAVMGVAGMQQKQIVLSAGADRRIFGFDVRVGRADFKHQVDS KCMSVLPNPCDFNLFMVQTGTHEKQLRLYDIRLRQTELHAFGWKQESSDSQSALINQTWSPDGLYIASGSVDPVIHIFDI RYNSHKPSQSIRAHQKRVFKAMWLQSIPLLISISSDLNIGLHKIY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 524 | 521 | 1.4E-253 | – | |
| PANTHER | 4 | 524 | 521 | 1.4E-253 | – | |
| Coils | 29 | 56 | 28 | - | – | |
| MobiDBLite | 43 | 58 | 16 | - | – | |
| MobiDBLite | 43 | 113 | 71 | - | – | |
| MobiDBLite | 74 | 104 | 31 | - | – | |
| Gene3D | 104 | 404 | 301 | 1.9E-20 | ||
| MobiDBLite | 135 | 168 | 34 | - | – | |
| SMART | 197 | 236 | 40 | 0.85 | ||
| ProSiteProfiles | 203 | 525 | 323 | 11.576 | ||
| SUPERFAMILY | 208 | 521 | 314 | 2.49E-34 | ||
| SMART | 296 | 339 | 44 | 1.8 | ||
| SMART | 348 | 386 | 39 | 10.0 | ||
| Gene3D | 405 | 524 | 120 | 2.2E-9 | ||
| SMART | 442 | 479 | 38 | 7.5 | ||
| Pfam | 457 | 479 | 23 | 0.012 | ||
| SMART | 484 | 523 | 40 | 3.3 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0332900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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