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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0335700 |
| Transcript ID | LotjaGi1g1v0335700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pseudouridine synthase; TAIR: AT5G51140.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q0E0Y3|PUS7_ORYSJ RNA pseudouridine synthase 7; TrEMBL-Plants: tr|V7AZ29|V7AZ29_PHAVU Pseudouridine synthase; Found in the gene: LotjaGi1g1v0335700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:79515913..79525715) extracted from Lotus japonicus Gifu genome v1.2.
AGGAAGAGAGAAGCCAACAAGGAAGAAGCCATGGATATCGTGTGGCAAACCCCAGCGAATCCACCACTACCGCAAGATTA CATATTCCGAAACGGTAACATCAAATCTCGTTGAACTTCCACACTAACAAGTTCCCCATTTTCACGATGACCAATTTCTT GTTCGAATTTTCGCAGGGTTTCGATTTGTTAGACCTTACTACTTCGAATTCATTGCTCATGTTAGTTCCATTTTCTTAAT CTTGTTCAATTTTTCTTCAATCTCACTTTTGATTACATTACTGTGTTTAAAGTTTAAACCCTAGCTAAACACTGAAAAAT GGTCAAATTGTTGTTACCAGGTCAAAAATCGTTGGGCTGGGAAAACCATTGTTGATTTGTTCGCTGAGGAGTTCAAAGGT CGACCTTATGAATATTATGTAAGAACCATGCCTATAATGGTTTCTAATTGTATGTTTATCGAGTTTAAATTCAATCCATT ATTAAAACTAGAGCATTTTACTCAATTTAAGTGTTACATCATTGTAGTTGGAGTTTCTGTTATAGCTTAGTATGTATGTG GTAACCATGTTGAGTTGTTGCAGATTATTTATTGAATGTTGATTTCATCATATATGTTTGAATACTAAAGTATGGTTGCT GACCAGGCAAATGCTTGATGAGTACCATACCTAAAACCATGATGGGTATCAGGATGATGCTGATTATCGTTTTCCGTAAA CTGCGGACTCACATTCTTCTTGAGTTAAACTTAGTGGACATGATGTTGCATTGGAGCGTTAGTTGATTGTTTGTGTTGAA AATTGTAGGTTAGTGCAGTGAAATGCGGAAGGATTCAAGTTGATGGGGAGATGGTACCGGTTTCATACGTGGTTAAATCA TCTCAAAAGATAAGCCACTTTTTGCACAGGTTTGTGTTTGTTGTTGATGCTTTGTTTCTTAGGGTGTGATTGAATTTGAA CTGAAGCCTCTATGATTTTAGGCATGAACCACCTGTGATGGCTGGCGGTGTTTCTATTCTTCAAAACGAACCGGATGTGC TAACTGTTTGTAAACCGGCATCTGTCCCGGTAAGTTTGCATAACAATTTGATTAGTGAAGTGCCCGTGTTATAATGCTAT GATGTTATGTAATTCATATGAGAAAATGAGCTCACCAATTTGAGTTGGGTTTTCAATTACTTTAGTATCTGTGGATGTCT TAAATTATGACTCTAGTTATATCTTTCATTAGAGTTTGATTCATTGATTTTAACCTATGATGCTTTTATGTCACTGATAT TATTTCCTTCAGTCCCACAGAGTTCTCCTCATTTTGGAAGGTTTTTTTATTCATTATTAGTTACCATGGGTGAGCTTTAT GGGTTTCTTTGTACTTCATATATGCTAAAGCTGTGAATTTTAGCTGTTACATAGGTGCATCCATGTGGTCAATATCGTAA GAACACTGTTGTTGGCATCCTCCAAGCAGAGCATGGATTGGCACCTCTATTTCGTATCCAAAAATGCCTGTAGGAAGTAT ATTATGTGATAGTTATAAAGATAAGTGTTACATGCTAATAAGGTTTTGATTTTCCAATCAGTATAAAATATAACTTCTCT TAAGCTCCATATTTTAGCATACCCACATCTTTCAGAGTCTATCCATTTTATACTTGCATTTTCCCCTTAACATGATTATC TCAGCTATTCATCGACTGGATCGCCTTGTCTCAGGACTTCTTATTTTAGCCAGAAATGCTACAAAAGCTGACAATTTTAG GCAACAGGTAAATTTAGGCAGGGACTTCTCTTTGATTCTTCATTCTTTTTCTTCAATTAGATTCTTAAATCTTAAATAAA GGTGGAATTGTTTAATTTTAATTGAAAAATTTAATGAGCAGCGTAGTTCACTTTGCTTAAGGAATTGAGTTGTTAGCCCG TTGAGATCTTAACTATAAATGTTAAATGCTCTGACTAAATATAGGAGATTCCATTATTTGTTTATGAAAATATGGCAGAT ATTTTGCAAAAATTAAAAAATAGGTATATTTAGATGGTACTTTACATTACCTACTTATTGCTATGAATTTGTGAAAGATA ATTTATTTACTCAGTCTGTGATAAAATTATTTGGTTTTACTTGCATGTTAATCTTTTCAATGTTCTTAACATGAACTTGC ATATACTGAACATAACTAGCAAAATATGCCTGAATTTAAGAGGACTAATAATACATTGCAAATGTTCATGCAAGAGGTGC TTGGTTTACCTCTTAAATTCAGTTGTTGCATTACAAAATGTGCTTTTTCACATTCACATGAAGTTTAGACATGAGCAGAA TAGATGTGCGGGGTTTTGCACTTGAGCTAGGTTTGAAATGACAATGAGTATTGAAATTTGTATGATGAGCCATTTAATTT CAAATAATGGTCTTGTACATTAGTTCCAAAATCAATTATCATGCAAAGATCAATTGACAACTTTTGCCTGCAATATTGAA GTGTCTGTGAGTGAGAAATATACCTACCTTTACCAAAATAGTGGTAAGGTTTGTTTTGGAAGAAAAAGAAACAAAACAAA AGTTCAGTTTCTAGTGTTGTGTTATATATCTTGATGAGTTCATATAAAAAACATAATCTATTTTGTTTGATTTACAATGA ATATGTCTACATTTATAATATGTATACTTTGATTGTTACAGATTGAAGCTGGCTTAGTCCAGAAACAGTATATAGCGAAA GTCATTGGAGAATTTCCGAAGGATGAGGTATTCTTCTATTTGGGCTAGATAATTTATGATAGATATTGTCATACTTGATA TTATGTTGAAGAAATGAAACCTGCAAGTATTTAACATATGATAATAATATGACCTCATTTTCTTTCTTTCTCTCTTTCTT TTGTTAACATTGTGTGGCATCATCAGGATTATTTATTGATTATATCATATGATTATATGTATTATCCTTTTATTGGGGAA ACTCAGCATGATAAAAGTGACAGGGACAGAAGTTTTAGGATGGGGAAAATATGGAGGGTGTACAGTAGAAAAACAAAATC GACAGTTAGTAGTTATGACTTAGGAGTGAAGTTGGAAGTTAGAAGGGTTGTTAGGGGAAGATGTTGAATAGCAGAATTGT AGAAGGACTAATGATCTTTTGGGAGAATTTGTTTGTGCCCACTGCCCAGCTCTTGGGAGGATAAGGATAGCTATATTTCA ACCTTGACGACAAGGTCGCTTTTGTACCAGGAGAGGCATTGATCGTTAAACTCTTTTGGGACTGTTGAGGGGGATGGCCC AAGGTCGTTGAAGGTTTATGTTACAAAAAGGAGACAGGCTTGATTTGTTCATTTCACATACACAGTTTTATTTTTTGTAT GAGAAAGTAATGTTTATATGTGTGGTTGATAGGGGTCTGGATGAACAGCAGCGCACATGAACAGTGCGCGTGAACAGTAA TTTGCAGTGGGTAGTTACAGAGTTGGTTATTTTGTAGTTGTGTCAGTTATACTTTAGGAAAACTGCTGATAGGTAGTTAT TACTTATAAATATAGAATACAACAGTCTATTACTCTTTCATTTTTCAGAAATTGGGTGGTTGTCTTAGGGAGAGACTGGA CTCTCAAAATTCCAGAATCTGTAGGAGAGAACTGGCTCTCGAACACCAGTATTTCCATAATTATTCTGTAATAAATTCTG TTCCTATCAGTGGTAGTTATGCATGATATTAGTAGGGTGTAGGTCTATGTTCTATAATGAGTTATAGGGGTGTGGCTTGT TTTTATTAAAGGAGACTCAGTGTTAGCGGGGAAACCTTGTGTTTGTTGGTGTTACACTTACACTCAATTTGGCCAGTAAA CCAGGTTATATCAATGATATATGATATATTTAAAGTTCTGTGTATTTATTTCTTGGGTCATACACAAACTGGCCCTGATT AACTGAAACTTCAATCCAAGATATTTAGTTATTTATACTTCAGTAGTTCAGTGAACTTCTTTAGTGTTGTTCAGTCAGTT AAGATTGAGATACTTTTCTCCTCATTTGACTAATTTTTACTTTTCAGCTAATTGTTGATGCCAACATAGACTATAATGCT CGAGAAGGAAGGAGCACAGCAGAGGTAAGACCTGTGGTTCTATATAGTTTACAGTTAGAGAATTTAGGGTATCATTCATA ATTTCATTCGAGAAAGTAGTTTCTTTTTCATTTATTTCCAGTTATAGTTACAAAAAGGCCCCGTTTGGAAACACAACTTA ATTAAGCACTTATGGTCATAAGAGCTTATTAATAAGCTATTTTAATTTTTTTATTGAAATAAATCGAAAATAAGCTATAT ATAAGCATAAGCTCTTTTTCATAAGCTATCCTGAGTAGCTTATGAAAATAAGCTCAAAAACCACAAGCTGTTTTCATACT TATGCTATCAGATAATCTCAAATAAGCTCTTCCAAATGGGGCCAAATTGCAATCCTATTTTCACTTTATTTTGTGTTTTC TAACGTTTGTATGGGAATTTGTGAAAACAATAGTTTGTTACACCTTTAAAACAGGAAATGAAGTGAAAAATTTAGCATTT TTGTAATTACTAGTGAACTAGAAAAACCCGCTTTCATATTATAGCTGTTTTGGGAAAATAATTTTCTTGCTTATGAGAGA AACAGTTTTTGTTTGTTTTTTTCCCTCAAAAGTTTTTTTTTATAAGCAAATTCTGTTAAGAAGGAATACTTTCCCTCAAA AGTTTATCTAGTTATTATATCATTTTCTGAACATACTTTCTTAGAATAGTACTTTTCTTAAAAATAAAGCATATGAACCC TCTAAAATTTTCCCCATCACTCTATCCAAATGATTAACAACTATTTAGGACTGATATATCGTCCTTCACTAGGAGTTTTG GGGGCCGTTTCAAGCCATAAGATCAGGAATTGAATCAGTTTACACTTGCACTCATTTACCTTGTACGATAAAAAGTTTAG AAAAGAAAACCATTAATTATATGTATGAAATTTTAACTTGAGTTCAGTTGAAATAAATTGTCACCTTTTAATATCAGTGT CTAGAATTTCGCATAATCGTGCCTAATATTGATTGTCACAATTAAAAAAAAAAATCTAACAAATGAACAATGCCTTGTGG CTTTAAAGCTCCCATGTTTGGTCATTGGACGACTGTTACAATTTGATTGGTTGTTACTTTTTCATTGTGTTTTCGACTTT TTCGTTTTGAAACTCCACCATCTAAGTTCAAGAGAATTATACTTTCCAACTCAACTTTGATCTTGGTTCTATGTGTATCT CATGGCACAAATCTTGTGTTGGTAAACATAAGTCAACTGCTGCTATGGTAGTGTAATGCTTCAGTAACAAGTGATAGCTG ACATTGTTGGAATAAAAAATTAATTGATGCATAATAAACTACAAGTAGGTAAAGACATGAACTTATCTTGTGTGATAAAT CTGAATGAATATATCTGTCATTGAAGGCCAGAGAGTCTGCAAAGGGGAAGACTGCCTCTACAAAATTTACTCGGATTAGT ACCAATGGTACTCAAAGTATTGTTTTATGTGAACCAGTCACTGGCCGTACACATCAGGTACGAAAAGTGTGGGCAGATAT AAATTGATATTTTCATACCACTCAACATTTAGCTGCATATTTGAATATGCTTTCTTTTCCTCAGGTGCAAATGATGCTTT TGATCTTTCATAGGGTGCTATAGATGTAATTCCATTTATGTCTCTCACATCTCGAGTTTGAACATCACTATCTTGTGTAT AAAAATTGAAATATAGGAAATGGAATGAGAAACACGGATACAATAGAAAATTTGAAATGTTAAGGTTGACAAGGGACTAA AGTTATGCTGTATTTCATCTTGTCCAGCTTATTACTAATATAAAATATGTGCTAACGAGTACACACCTCTGGTGTAGATA CGTGTTCATTTACAGTATTCGGGACATCCAATAGCCAATGACATGCTATACATTTCAGAGCAACCTATTGACCGACATAT TAAAGGCTCAGGTGCCGATAGATCAGCTCGTTTATCTAATGCTTCTCTAACATCAAATTTTGATGAAGTGCTCAATGAAT TTGAAGAAAATTCCAACGGGGATTTTGGTGTTGATTCCATGTGTACAAACTGTCCAAATTTGGCACCCAAAGGGTAAGAA AATCCTCTATCTTTTGAGAAAGCAAAATTGCTACTTGTTTTGTATTGTGAATTGCAAGAGAAGAGATGCATGACTAACTT TTAATGTTAAAAAGTATACTCTCTGTCTCTGGTGATCAAGCCTTATCCAGTTGTTGGTTGTGATTAGTGAGGGTAGACTT TTTTCTAGTGGTCAAGTAGTTTTTATGATATAATGCTGCATACAAATAATACCAGTTTTTACATTTGATCTGGTGTGATA AATGTTTTATGATCTAAGGACAAGCTGAACTTGGGATTAGGTTAAATATTTGCTTAACAAGCTAGAAGGTTAAAGTTGTG GGTTGTTAGTCATATGTGTTTACTTCTTATGTTGTGTTTGTGTAGCAAAAAACTGTTTCTGCATGTATTTGACTGTGCAG CTGATGCCTCTGTTGATCCAGTTAAATATTTAATCTGTTTTATGTCTTTACCTAAAGCATACACGTCTTATTTTCTGCTG ATGCAGAAACATAATAAATGCATACACAGATGAGTATACACATTTTATGTTTATTGCTTTTTTTTCTTCTTCATGTTTTC TTGTTTTGTTTGGCTTTCTTTTTTGTTCTGTATTTGGTATATTTGGAAGCTTACTTGAATTCTTCATTTGTTTTATAGCA AGCATCTAGTAACTTCATTTTATAATTTTGAGAATTCTATTTTGACTAGTGAGCAGTGACTTTCCTTATGTTTATGAATC TCAGTCAGCTTGATCACTAAGTTTGTTTTTCGGTCACTTCCATCATTTCAGGTATGACGGCGATGAAGAAGGTCTGTGGC TACATTGTTATCGGTACTCTGGACCGGGATGGACGTATGAATGCCCGTATCCTGATTGGGCGAAGCTTAGCTAGACAACT TTCATGGGACACTTCAAACAAAAATATTTACAACAGCACTTTATCTGACCATCAAACCTAATGCCCAATGGGAGTTTTTC GTGTGAGTTCTGCAGGTAAGTTAGTGAGTAGTTATTTAATCTTAATGTTATTGGGGTAGATTGGGGAAGGAATAGAATGA TCATAATCATAGTCATTAATTTATTTTTGATTATCATCACATGTTTTCCATTTGAAAAGGAGCACTTTTTATAGTGCATT TGTACTATTAAGTTTTTCTTTTCAATCCGTGTCGTATTAAACGTGAATGCTTTGCATTGTTGACTTGTTGGGTAGAACAC GAAAGCCAAGTTATTTAGCCATTTGTGGCAACAGCTGTCTGCAGTATCCGAGCATGGAGAATTTTGAGAAACAAAAGGTG CAGTATTTAAGGGGTTGTTACATTTTATTTTTGTTTATTTAATTGTCGTCTTTGCCTTTATGTTTTCAAGCGTGTAACGT AATTTTGACGAATGAATGTAGGGTTAGATATTTAGCTAGTAGTGGGAAAAATTAAATTTATTGATATTGCATGGATTTGT TAAGATGTACACTAAACTTTTCTATCACGGTTTGATATGCTTTATTTTTGGCTCTAGAATGAATTACTTTACTTAGGAGA ATCAAATAGTACGAATGTCTTTTATTTTGTTCACAATGATAACGTGCATCATGGTTGCACCCTCCACCTCCCACATCCAT CCTCAAATCACGTTTTAGTGAGAAGCTATATTGTCTTTGATTTGCGGCTGCGTGTTGGAGTGCGTGGAAGCAAACATACA TTTGAGTCCCTGCACAATTTTGACAACTTTCTTGTACTCGGTTTGCTGTTTCAAATAAATTTGGTTTGGTTGTTTGTCAA ATGACTAGAGTCACTGCAAAACTAGACGTATAACATATGGGCCCATGATCTTTCCTTAATGCATACTCATTTGAGCCATC TCATTATAATGATGATACCTGACCGTTTGTGGTTAGCTTGTTATTCATTATTTTTTCAAAAAAAATAAAATAGAATTAAC TGTCATTAAACATACTTGCATAGTTGCATTCCATTGCAAATTATTTCAACTTAAGTCAAAGGTATAATTGGCAAAATATG ATTAATACTACCTTGAAATTTTAAAAGTGACAAATGATAAATAGAAATAAAATCTCAGGTTTGGACCGATAAAGAATGTG GGGAGTATTACATGAAGGGAGAGTGCTGCACATGCAAAACTGAAATTAATTCAAGAGTAAGAGTGGAAGTTTGTTTTTTT TTAAATGAGTTTCCATTAAATTTAACCAAAGGAGGCATAATTTAGTGGATTCACATGAATTTTAAGCAATAAAGAACAAT GATGAAGATTTATTACCCGTTTATTCCAAAAGTAGAGGTAAAACTATTAGGTAGACTCTGAGGTACCCTGAAATTCTTTT GGGTACGGTGCCCCGACTAGATGAAATTGTGAAATTGAAGGGCAGAGAAAGAGAGAAGATTTTAACTTTTGTTGGAATCT TAAACGTTATGCCGGTTGTTGCAGCTCTTTTTAAGTCAGAATCTAGTGGTGGAAGCGGAAATGTACGTGATGTAATAACA AGAGAGTTATTGACCACAATAATGTTGAGATATGAAAATTGGTGTCGAACGACAAGATAATGCGATAATCTACTAAAATG CTCATGAATGATGGTGCTAGAGGCTTTTAGAAGTAAAAAAAATTGGAGATAAAGAGGGGCATTAGTTTTAACACCCCCTC AGTTAATCCCACACCCTCCCTCACCCTCTATTTTTTAAAAAAATTCCTTTAATACCCTCTTATATAACCTAAAATCCTAA CCCTAACAGCCTCTCTCTCACTCACTCTTCTCTGAAGTCTCTCAAGCTCTCACCCACAACCTCTGAATTCTCTCACGCTC TCACCCACAACCCACGACGCCGCCACCCACAACGCTGCCACCGACGACGCCGCCACCCACGAACCCACTCGAGCAACCAC GTTCTTTCTCCCATAGCCACGAGTTGAGGCAACACGCTGCCACCCACCACACCGCCGACCCACCACGCCGCCAGAAACCC ACTCAACCACTCGATTCCACGCTAAGGTACACCACCACGCAGATCTGTTTTCATGTGCTGTTTTTCTTTGTTGGTTTTGT GTTTCTCTGTGTATGTGTTTCCCTGTTTCCTTGGGCATTTCTTGTGCAGTTTTTATACCTCAATATATGTTTCCTTTGCT GTTTTTCTTCTCTACCTTTCATTGTATTTATAGCTTTGTATTGGGTGGGCCAAAAAATTGTACAATTGTTTATTATGGTT GGTGAGAGAGAAATTTGGATTTTGCTGCAATGGGATGCTCATTGCAATTGTTTATTGCCCTTGTTTATGTTTGTGATATT TGTTGATTAGAATAGCATGATTTAAATTTTGTAGGAGCTCATTTTGTGACTGAATGCAACCTGTTTTCTCATGTTCAGGG GAAGTTTCGTTTACTTAAGGGGTAGCTGGAACGTGCAATGAATACTGTTGTGAGTGGGGCACCCCCTATGGAATCTGAGG TCTACAAAGAACTCCAATATATGCTGTCTATAGTGGAGCAGAGCTTGCATGGTGATCTCGTTTACCGGAGATCAACAAGG AGGGGTGGATAGATATGCAGTCTAGCTCAATGTCATAGTCGTGATTGTCATGTTATGTTTGGATAGATATTATGTATTTT GTTAGGGCGCCCATTTTGTTAGTTTGGATATGTTTTAAGTATG
CDS sequence (LotjaGi1g1v0335700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATATCGTGTGGCAAACCCCAGCGAATCCACCACTACCGCAAGATTACATATTCCGAAACGGGTTTCGATTTGTTAG ACCTTACTACTTCGAATTCATTGCTCATGTCAAAAATCGTTGGGCTGGGAAAACCATTGTTGATTTGTTCGCTGAGGAGT TCAAAGGTCGACCTTATGAATATTATGTTAGTGCAGTGAAATGCGGAAGGATTCAAGTTGATGGGGAGATGGTACCGGTT TCATACGTGGTTAAATCATCTCAAAAGATAAGCCACTTTTTGCACAGGCATGAACCACCTGTGATGGCTGGCGGTGTTTC TATTCTTCAAAACGAACCGGATGTGCTAACTGTTTGTAAACCGGCATCTGTCCCGGTGCATCCATGTGGTCAATATCGTA AGAACACTGTTGTTGGCATCCTCCAAGCAGAGCATGGATTGGCACCTCTATTTCCTATTCATCGACTGGATCGCCTTGTC TCAGGACTTCTTATTTTAGCCAGAAATGCTACAAAAGCTGACAATTTTAGGCAACAGATTGAAGCTGGCTTAGTCCAGAA ACAGTATATAGCGAAAGTCATTGGAGAATTTCCGAAGGATGAGCTAATTGTTGATGCCAACATAGACTATAATGCTCGAG AAGGAAGGAGCACAGCAGAGGCCAGAGAGTCTGCAAAGGGGAAGACTGCCTCTACAAAATTTACTCGGATTAGTACCAAT GGTACTCAAAGTATTGTTTTATGTGAACCAGTCACTGGCCGTACACATCAGATACGTGTTCATTTACAGTATTCGGGACA TCCAATAGCCAATGACATGCTATACATTTCAGAGCAACCTATTGACCGACATATTAAAGGCTCAGGTGCCGATAGATCAG CTCGTTTATCTAATGCTTCTCTAACATCAAATTTTGATGAAGTGCTCAATGAATTTGAAGAAAATTCCAACGGGGATTTT GGTGTTGATTCCATGTGTACAAACTGTCCAAATTTGGCACCCAAAGGGTATGACGGCGATGAAGAAGGTCTGTGGCTACA TTGTTATCGGTACTCTGGACCGGGATGGACGTATGAATGCCCGTATCCTGATTGGGCGAAGCTTAGCTAG
Protein sequence (LotjaGi1g1v0335700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDIVWQTPANPPLPQDYIFRNGFRFVRPYYFEFIAHVKNRWAGKTIVDLFAEEFKGRPYEYYVSAVKCGRIQVDGEMVPV SYVVKSSQKISHFLHRHEPPVMAGGVSILQNEPDVLTVCKPASVPVHPCGQYRKNTVVGILQAEHGLAPLFPIHRLDRLV SGLLILARNATKADNFRQQIEAGLVQKQYIAKVIGEFPKDELIVDANIDYNAREGRSTAEARESAKGKTASTKFTRISTN GTQSIVLCEPVTGRTHQIRVHLQYSGHPIANDMLYISEQPIDRHIKGSGADRSARLSNASLTSNFDEVLNEFEENSNGDF GVDSMCTNCPNLAPKGYDGDEEGLWLHCYRYSGPGWTYECPYPDWAKLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 367 | 358 | 4.3E-136 | – | |
| PANTHER | 10 | 367 | 358 | 4.3E-136 | – | |
| TIGRFAM | 40 | 281 | 242 | 4.0E-61 | ||
| CDD | 91 | 367 | 277 | 6.89247E-104 | – | |
| Gene3D | 101 | 354 | 254 | 1.0E-48 | – | |
| SUPERFAMILY | 107 | 366 | 260 | 4.32E-48 | ||
| Pfam | 115 | 263 | 149 | 3.3E-30 | ||
| ProSitePatterns | 153 | 167 | 15 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Pseudouridine synthesis | The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | RNA modification | The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. | ||
| Molecular function | Pseudouridine synthase activity | Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5. |
Expression pattern of LotjaGi1g1v0335700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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