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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006224
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 11 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.871s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0169599.1
n.a. PREDICTED: RNA pseudourine synthase 7-like [Cicer arietinum] gi|502133332|ref|XP_004501725.1| chr0 80974862 80982555 +
2 domain predictions
4 GO terms
Lj1g3v2251580.1
n.a. PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cicer arietinum] gi|502131232|ref|XP_004500918.1| chr1 26461487 26467794 +
2 domain predictions
4 GO terms
Lj5g3v1839410.1
n.a. PREDICTED: RNA pseudourine synthase 5-like [Glycine max] gi|356576201|ref|XP_003556222.1| chr5 26238837 26245820 -
2 domain predictions
4 GO terms
Lj5g3v1839410.3
n.a. PREDICTED: RNA pseudourine synthase 5-like [Cicer arietinum] gi|502118549|ref|XP_004496322.1| chr5 26242287 26245821 -
2 domain predictions
4 GO terms
LotjaGi1g1v0335700.1
n.a. Pseudouridine synthase; TAIR: AT5G51140.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q0E0Y3|PUS7_ORYSJ RNA pseudouridine synthase 7; TrEMBL-Plants: tr|V7AZ29|V7AZ29_PHAVU Pseudouridine synthase; Found in the gene: LotjaGi1g1v0335700 LjG1.1_chr1 79515819 79525777 -
2 domain predictions
4 GO terms
LotjaGi1g1v0335700.2
n.a. Pseudouridine synthase; TAIR: AT5G51140.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q0E0Y3|PUS7_ORYSJ RNA pseudouridine synthase 7; TrEMBL-Plants: tr|V7AZ29|V7AZ29_PHAVU Pseudouridine synthase; Found in the gene: LotjaGi1g1v0335700 LjG1.1_chr1 79515913 79525715 -
2 domain predictions
4 GO terms
LotjaGi1g1v0431800.1
n.a. Pseudouridine synthase; TAIR: AT1G76050.2 Pseudouridine synthase family protein; Swiss-Prot: sp|Q3ECD0|PUS2_ARATH RNA pseudouridine synthase 2, chloroplastic; TrEMBL-Plants: tr|V7ARA7|V7ARA7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0431800 LjG1.1_chr1 92670158 92680513 +
2 domain predictions
4 GO terms
LotjaGi1g1v0431800.2
n.a. Pseudouridine synthase; TAIR: AT1G76050.2 Pseudouridine synthase family protein; Swiss-Prot: sp|Q3ECD0|PUS2_ARATH RNA pseudouridine synthase 2, chloroplastic; TrEMBL-Plants: tr|V7ARA7|V7ARA7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0431800 LjG1.1_chr1 92670634 92679381 +
2 domain predictions
4 GO terms
LotjaGi5g1v0229200.1
n.a. Pseudouridine synthase family protein; TAIR: AT1G56345.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q7XA65|PUS1_ARATH RNA pseudouridine synthase 1; TrEMBL-Plants: tr|A0A072VMN0|A0A072VMN0_MEDTR RNA pseudouridine synthase; Found in the gene: LotjaGi5g1v0229200 LjG1.1_chr5 53638667 53645198 -
2 domain predictions
4 GO terms
LotjaGi5g1v0229200.2
n.a. Pseudouridine synthase family protein; TAIR: AT1G56345.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q7XA65|PUS1_ARATH RNA pseudouridine synthase 1; TrEMBL-Plants: tr|A0A072VMN0|A0A072VMN0_MEDTR RNA pseudouridine synthase; Found in the gene: LotjaGi5g1v0229200 LjG1.1_chr5 53638684 53645475 -
2 domain predictions
4 GO terms
LotjaGi5g1v0276400.1
n.a. Pseudouridine synthase; TAIR: AT3G52260.2 Pseudouridine synthase family protein; Swiss-Prot: sp|Q5M721|PUS5_ARATH RNA pseudouridine synthase 5; TrEMBL-Plants: tr|I1NHE4|I1NHE4_SOYBN Pseudouridine synthase; Found in the gene: LotjaGi5g1v0276400 LjG1.1_chr5 59089732 59097019 -
2 domain predictions
4 GO terms