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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0336600 |
| Transcript ID | LotjaGi1g1v0336600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | HVA22-like protein; TAIR: AT5G50720.1 HVA22 homologue E; Swiss-Prot: sp|Q9FED2|HA22E_ARATH HVA22-like protein e; TrEMBL-Plants: tr|I3SUZ2|I3SUZ2_LOTJA HVA22-like protein; Found in the gene: LotjaGi1g1v0336600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:79619793..79623060) extracted from Lotus japonicus Gifu genome v1.2.
ATCTCAATCAACAGGACCACCCAACATCAGATAGAAAACCCCCAACCTTAATATGATATCTGGCATTGGTATCACCGTAT TAGCCCTCATATCAGGGGATTCAGGAGGCAAATTAACCTCCACGTGGCTCCAATACGCGGCTTGTAAAAAAGTGTTCACA CGTGGCTTGTATTTTGAGCAAAGAATTTCCATAGAAATTGACCTCTTGTAATTATTAATAGAACTCTGCATTAAATTAAA CAAGATAAGAAGATGAGATAATCACTTCAATTCTCTTATTTGGACGGTGCTAAATTTAGCATGACACGTCCAAGGCAGAA TGCGATACTTCCTCCTAGCTTCCCACGTGTCCCTTTCTCTCTGATGAATCCCAATTCACCAACTTTAATATAAACGAAAC TTCCATAGTAGCTCTCATACATTTTCACTTTAGTAGTTGTTGCCAACATCTAAGTGATCACTTTACTCTCTCTATTTCTT CACCCCTTTCTTTATCTTTAACCTCGATTCTTCGCTTCTAGCAATTCCAATCAAATTTGTTCAGTAAAAGGGACTAATTA ACACTCACCAATATGACCAAGTTGTGGACCTTGATTACCCAGCTTCATTCCCTTGCTGGGTATGCAACCTTTCATATCAC ATTCATTCTTCTTTCTGCATCTTGATTACCTCTTGAACTAATATAATTCAATTAACCTTATGCGTGTGGTTTCTTTCCTT GCAGGCCGGTTTTGACGTTATTGTACCCTTTGTAAGTATCAATCACAACTAATTAAGTTTGATTAATTAACAATATTTCC TGGCTTGCATGAACGTAATTAATTAAATAAATAATTTATTATCATAGGTATGCATCGGTGGTAGCAATAGAGAGCCCATC CAAGGAGGATGATGAGCAGTGGCTATCTTATTGGATCATCTATTCATTCCTCACCCTTGGAGAAATGGTTCTTCAACCTG CTCTAGAGTGGTAAGTGAGTTCAACTAATTAGCAATCAATTTTTTTTTCAGATTTTTGCGATATAGGATTGATAATTAAG TTAATTACATGAATTATTGTTGAAAATTGAATTATAGGATACCGATTTGGTATGAGGTGAAGCTGTTGTTGGCGGCGTGG TTGGTGTTGCCTCAATTCAAAGGGGCTGCTTACTTGTATGGGAAGTTAGTGAGAGAGAACATACGGAGGTACGCGACGGA GAAGGAGAAAAAGGAGCACAAACAGAAACAGGTTTCCCCAAAAAAGCAACAGGACAAGAAGTCTCCCACTGGAAGCAAGG GGAAGAAGTTTGTTGACTTTATCATACCTAAGAAAGTGAGCTCATTAATTAACTTAATTAACCTTTCATTTTGATGAATC AGATTGAAATGAATTAATTAGATGGTGTTTAGAATTAGTTATCATGTTATGGTACAAATTTTGATTGAGATTTTTGTTAT GATGGTGATGAAACAGGGGGATCAAGAGGCTTATTGAGTTTGGAGTGGATATGGGGTTTGACTGAGTGATGTTTGGATCA TCAGCTTCATTTTCAAGTTAGCTGGTTAATTTGCTCATCAGGTTTTAATTGTGTATGTAGTAAAGTAATGCTTCATGTGC CTTGTCTACTTTTGTATAGGTTGGTGGATTTCTAGGTGAGCCACCATACATATGGGCTGTAATATCAAATATAGCTAATT AACACGAAAGTAATACCAATTCCGCAACTTACATAATTTTCTTTTTCTTGTGTGGTCTTGGAATTTCTTTTGCCCAAGCA AGCAACTAAAGAGAGGAGAGAATTCCTTGGTGTTTTTGGAAGTTTTCTACTTTCAACCTTGTTTTTCTTCTTTGTCATGA CTCTTTAGTGTTCCTTGGTGTTTTAGTGTTCCTTCTGTAACAAAAAAATGAAAAAGCAGAATCACATATGGAATTTTATA CGAAGTCTATAATAGTTTATAGGCTTAAATAAGTTTGTAGTCTCTAACCTTTATTAAATACTTGGTTTTTGTCCCTCGCC GGAGCAAAGGTGGGCTTTAGTTCCTAACCTTTGCCAAAACGTTTGGTTTTGGTCCCTCCGGAGATTTGGGTCAACGCCAG AGTTCCGGTGGCCCATGTGGCATGACCACGTGGATTAATGAGGCCATGTGGAACTTGTTTTTTCTTTTCATTTAAATTTT TAAAAAACTCAGAAAAATCTTTAAAAAAAAACAAAAATCCAGAAAATAATAAATTTATCCTCATCATCTTCATCCCAATT CTTTTATCTTCTTCACCAAACTTAAATTCAAAACCCATTCATCAACCAAAAATTAAAATCATCATGCTTCATTCAAACCC GAATTCTATCACTCAATCATTCAAACCCGAATTCTATCACCAAAATTATCTCAAATTCAAACTCATTTTTAGAACCTCTT CACTCAATCCAGATTTTGGGGACAATTCCAATTAAAACCCTAAAAACCTGGAAACAATCTCATAATTTCAAATCCCCTTC CTGTTAAAAGCATTAACGTATTATCATCATTCTTTTTGTCTTCCCGCCGCAGCCATCTCTGTGCGATTTTGTCTCGGTGC TGGGATTGGGTTTCGGTGGTGCGATTGGGTCTCGGCGGTGGTGCGATTCCAATCATCCCTGTCTTCCTCCATGACTAGCA GGGCCCTTGGCTTTCCCTCTTTCCCGATCTCGTCGCTTTTCTATCTCTGGAATCTCTCTTTCTCTCGCTGAGTTTGGGGT ATTTTGGTTGAGATTTTGTTCAGTTGCTGATATGTTTCTGGGTTGAGAACAAGGTGAAGAAGAAGATGGTGGGTCTGTTG TTAGGTTGGGGATGAGGAAATTTTGGGTTGGGTCTGTTGTTGGATTTGGTTCAGTTGCTGATCTGTTTCTGGGGTGTAGA AGAGTCGCATCAAATAGTGACAATTTGACATGGTGTTGCCATGTGTGCCTTCCTCATTAATAGTAATTAATATGCGATTA CAGAAGAGCCATGTAGTAATAGAACGGAGTGTGCGATAATTCGCCTTTACTCAAATTCACCTTTTTTGGATTTTCCTTAC TTCAATCTCTAGTCCTATAAATATTTCCCAAGTTTGCTCGCTATAGGTGGTCGTTGCTCTCTACGCGCCTTTACCGCAAT CATTTTCTTCTCCATTTTTTTGGCAAGTCACCTACTCTTTTTATCTTTTTTATCGTTGCTCTTGTTTGCACACAATAATT TGAAGAATTTTCAACCTGGAAAAGTCAAATCTGAACTATTAAATAAATTTAATTGTAGAGAGTTTTGG
CDS sequence (LotjaGi1g1v0336600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCAAGTTGTGGACCTTGATTACCCAGCTTCATTCCCTTGCTGGGCCGGTTTTGACGTTATTGTACCCTTTGTATGC ATCGGTGGTAGCAATAGAGAGCCCATCCAAGGAGGATGATGAGCAGTGGCTATCTTATTGGATCATCTATTCATTCCTCA CCCTTGGAGAAATGGTTCTTCAACCTGCTCTAGAGTGGATACCGATTTGGTATGAGGTGAAGCTGTTGTTGGCGGCGTGG TTGGTGTTGCCTCAATTCAAAGGGGCTGCTTACTTGTATGGGAAGTTAGTGAGAGAGAACATACGGAGGTACGCGACGGA GAAGGAGAAAAAGGAGCACAAACAGAAACAGGTTTCCCCAAAAAAGCAACAGGACAAGAAGTCTCCCACTGGAAGCAAGG GGAAGAAGTTTGTTGACTTTATCATACCTAAGAAAGGGGATCAAGAGGCTTATTGA
Protein sequence (LotjaGi1g1v0336600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTKLWTLITQLHSLAGPVLTLLYPLYASVVAIESPSKEDDEQWLSYWIIYSFLTLGEMVLQPALEWIPIWYEVKLLLAAW LVLPQFKGAAYLYGKLVRENIRRYATEKEKKEHKQKQVSPKKQQDKKSPTGSKGKKFVDFIIPKKGDQEAY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 2 | 143 | 142 | 6.1E-61 | – | |
| PANTHER | 2 | 143 | 142 | 6.1E-61 | ||
| TMHMM | 10 | 32 | 23 | - | – | |
| Phobius | 12 | 32 | 21 | - | – | |
| Pfam | 24 | 98 | 75 | 2.0E-27 | ||
| Phobius | 33 | 43 | 11 | - | – | |
| TMHMM | 43 | 60 | 18 | - | – | |
| Phobius | 44 | 63 | 20 | - | – | |
| Phobius | 64 | 74 | 11 | - | – | |
| Phobius | 75 | 94 | 20 | - | – | |
| TMHMM | 75 | 97 | 23 | - | – | |
| Phobius | 95 | 151 | 57 | - | – | |
| MobiDBLite | 107 | 151 | 45 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0336600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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