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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0337200 |
| Transcript ID | LotjaGi1g1v0337200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Squamosa promoter-binding-like protein; TAIR: AT5G50570.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; Swiss-Prot: sp|B9DI20|SP13A_ARATH Squamosa promoter-binding-like protein 13A; TrEMBL-Plants: tr|V7AW67|V7AW67_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0337200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:79763097..79767596) extracted from Lotus japonicus Gifu genome v1.2.
TCTCTCTCAAGCTATCCATGTTGTGAAGGGAAAAAGGAGCCCTATATTTGGCAACATAAATTTTTTAAAATAATTGGTTC AAGTTAGCATATCATCCAACCCCTTTTTGCCTTTCACTGCTCTTCCTCTCTCACTCTCATTATCCATTCTCTTGTGTGCC CAAATCCACCATTTCATATTCTTTAAGTGGCTATCAGGTATGGTTTTCAGGGATTCTCTCTCTCTCACCTGACATACAAT TACCTCATGTCATTTTAGAAATAATATTAAAGAAATAAGAGAAAAATGAAGTTTCTAAATTTTACTATTCACTCAATTGG GTACTCATGGATGGAATCCATGTCAGGGAACGAGTGGTCAGTGAAGGGAGATGAAGTAAGCATCCTTCTGCTGCTGCAAC TGTGTGCAAGTACTCTCTTTCAATGAGTATTTATTGATTTCTTTACTTTTCTATTTCTGTGCTTCTAGTTGCTTCATTGA AATCTTTGTTGGGTAACCTGAATGAATGTTAGGTTCTACTAGTTTCCATGGAACACTTGTTACTAGATAGCTAGGTAGTC AAGTATTTAATTATGCATATTCACACTTCTGATGTAGTTTTCTTCATTGTACGGACATAAACCTGTCCAATGTATGTCTC ATAAGTGCTTGTCTCTCACTGTCTAGTTTTTCAAATTTTAAGTTTTCATAATTTCCTCTTCCACTTTAATCATTTATCAC ATTCTATTCTTGTTGAACTGGAGTCTAGCTGTGATCCATATTACTCATATTTTTTTCTTGATTTAGTTTAGTTCCCCTTA TTTATAGCCTTTTGTCTCAATTTTTATGAAACTGGTCATTTTGTTGCTAACTGCTTAATTCTTCTGTTGGCTTTCATACA ATTGTGAATCATATGGTATAAACCAAACAAAGAGTGACATTGAGGAAGCAGAGCTGAGAACTGAAAAGTGAAAGTTTATT CCATTTTTACTTTTTTTTGTCATGGACTGGAATTTGAAGCCACATTCATGGGATTTTTCTGATGTGGATGAGGCAGCAAC CTTGCCCAACGTAGAAACAATGGAAGATTCAAGCAGAATTGGAGTTCATAGGATGAAAGGGGTGTTTTCTGTTGACTTGA AGCTTGGTCAGGTGGGGAATTCTAGCACAGAACCAGCACTTCCCAAATCCAAAGATGCTGCTGCTGCTGAAGTCTCCAAA ATGGGATCATCTTTTCCTTCAGGGTCTTCTAAGAGAGCTCGAGCCGTGAACAACGCGACCCTTACAGCGTTTTGCCTTGT GGATGGGTGCAGTTCTGATCTTAGTAATTGTAGAGATTATCATAGGCGCCATAAGGTCTGCGAACTTCATTCCAAGACCC CAGAGGTCACAATTGGTGGCATGAAGCAAAGGTTCTGCCAACAATGTAGCAGGTGTGTTTCATATGTATATCATTTAGTT GGGACATGTTGTTCTTTTGTTTAAAATAAGGTTATAAGGTTATGTATTTGTTTTTCTAGATTGCTTGTAAGTTGTAACTT CTCTTAGTTAATGCCTATATTTTTTCCTCTTTTCATTTTTCTACCTGATAGACAGCCAGTGCATGTTTTGAAACCCTATT ACAATTATTCTGAAGCCATGATCAATTTGGGGAGAAACTTCTATGAATAGCTTATGGATTTCAGAATTGATTCCGGTGTA AAAAGAAAAAAAAAAAACTGACCCAAACATGCTCTATTGCATTTGCATCTGTATCTATTATTCAAGTGAGCTTCTACATG TAATCTTGCCTATTAACTAAGCATATTTGGTTTCACGTTTAAAAATTCCAGAATCAAATTTTCTACTAAAGAAGTTATTC CTAATAGCTTCTTCCAAAATCACTTCTCCTCCTAAGTCCTAACCTGATGACCTATCAAGTTTCGAAACACACTCTATTAC TAAAGAAGTTATTCCTAATAGCTTCTACATGTTTGTTGCTTGATCACACCACTCTCATGCTAGAATGTACTAGTTTATAG TAACTTCATTTTAAATCTTTGTGTTTATGTCTATACTTGATGAATGGCACATTCTTAAATCCTCAGCAGAATCTATGATA TCTGAGTGTTTGGAACACAATTACAGAACTTTTCATAGAATCTGAGAGAATTACTTGCTGTATTGATCTGCTAATAAACT GTGTATGTGTGTATTTTTACCTGTACTTCTGGTGAATCATGTTTAGAAACATTTCTACAATTGACTCTGAACCCAGAATC AATTATGGGGAGAAGCTTATGTGATTAGCTTGAATTTTAGAATTGCTTACATTCCATATTGCCGTGATATCATTCTTAAA TGTATGAAAGTGCCGATCCAAACATGCTTAGTATCTCGTCTAAATTTGATTTTATTTGCTTGCATTTCCACTCCATAGTT CCATGATATCATTCTTATGTGCTTGAGTTCCTGAAATAATGATGAACCTTTCATTTTCGAAGGTTCCACTCGCTGGACCA ATTTGATGAAAGAAAAAGAAGCTGCAGGAAACGTTTAGATGGACACAACCGACGTAGAAGAAAGCCTCAGCCAGAACCTC TCAAAGGACCGGGTAGTTTTTTGTCCAGTTACCAAGGTTTGCTCCTAGTTTCACCATATTATCTCAGTGGTCCCAAAATT CATGCCTAAATTTGATGCATGCATTAGCTAAAGATCCCTACACAGGTACACTAATCTCAAAATAGAAAGAACTTTCATGT GGTAACAAATGCACTAGGCTAGATCTAGATGAGTGCTCTGCCAATTGTACCTGATGGACTTAACATGGTCCATCTATGTC CACGCTCATGGCAATCTAGTGTCCACTATAATAATGTGTCGGTACATAAACCAAACAACATATTCTGATTTTGAGAGAGG AACCTAGACTATCATTTCTAGCCAATTACCTAGTCATGAAATTAATGTCAGTATCATTTATCTTTGATGCCTCGAATCTC TGGTTTGGAAAATGTATGATTCATGAACATCACTGTCAAAAACACAAAGTTACAGAAAAAAGTTCATGAATACCGCACTC GTCCTCTAGACCAGTTGGTCATAGAGACTCTAAATAAGTGCTGACCTGGTAGGCTGGCCTGCCCCGGCCCGCCGTGACCT GTAAAAAAGGTTTTTGAAAGCGGGTTCCAAGTGGGTTTTCGGGCTGAATTTCCCAACTCAAACCCTCCAAAGAAGACTGG CTAGGCCCATTTTGCCACCCTATCTAATAGCATTGTGAGACAACTATTCCATAAATTGCATGATGACATGTGAATGATTT TATACTATACTGACATTTTCCCCATTTACCACACACACGAAATCGGAATGAAATATTATGTTCTCCTTTGGGGATTGAGA ACCTCTGACATCAAATAATGTCTCATTTCCTGTCTTAACTAATGAAATTATGCTATGTCAATTTAAAAATATATGAATAT AACATTTATAACCTTACATGAAAGATTTTTAATTGACATGACACAATTTCATTGGTGGGACAGGGAATGAAACACCATTT GGGGACGAAGGATCTTGATCCCTCATTTGGTGTCCCGCCAATTAAATTGTGACTTGTCATTTAAAAAGTACCAATGTAAG TTTATAATTTCCATATCCATGCACTTCTTAATTAGAATGACAAAACTTGATTGGTGGGATATGAAGTGAGACACCAAAAG AAGACAAGGTATCTTAATCCCAGAAAGTATATATATTGGTTAATCCTCCCACCAGATAAATTATAAAACTTTAAGAAATT CAGTGTCTAAAATTTGATCACTACTTTTTTCAGGAAGTCAGTTGCTACCCTTCTCAAGTTCCACTGCTATGGTGAATCCA GGTTGGAGTGGTGGACTTGTTACTTCCAATGCAGGTGGTAGGCTTCACAACCACAACCAGCACCAACAAGTGCAGCATTT GGTTGATGAACGAGATTTTTTTCTTGGATCTTCTCCAACAAGCTACAAAGAAGAGAAGCAACTCTCATTCTTACACAATG ACAATCCCTCCTCTACCACAATTGATAACCAACTTTCAGCTGCTTCTGTGAGCCACTTGCTTCTCAGGACAAGTTCAGTT CAGGACTCCCCTTGTGCTCTCTCTCTTCTGTCATCATCATATTCATCACAGACTCACGCACCTGGAAATGGTTTGGATCA AATGGTGCAGCCTCACGCAATGTCAATGTCCCTTATGGAGCCATTAGGCCTGAGCCTGCATGATAATAACAGCAGCTTAG AGTCCATGGACCCAGTCTTGGTTCATAGTGGGAGTGACCATTGTTCCTCAATGTATAACATGGGTTCTGATGGATCCCAG AGCAATGAAGCCCCTCAACTATTTCCTTTTCAATGGGAATAATTTTTTGGGAATTGGATGGAATGGGGTAGAATGAATAA AAATACACTTCCATTATTTGGATATTTTGCAATTAAATTGAATAAAGCTTTCACTCCATTATTTGGCTTGGCTAATTAAT GGAATGATTATTTTTTATTA
CDS sequence (LotjaGi1g1v0337200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGATTCAAGCAGAATTGGAGTTCATAGGATGAAAGGGGTGTTTTCTGTTGACTTGAAGCTTGGTCAGGTGGGGAA TTCTAGCACAGAACCAGCACTTCCCAAATCCAAAGATGCTGCTGCTGCTGAAGTCTCCAAAATGGGATCATCTTTTCCTT CAGGGTCTTCTAAGAGAGCTCGAGCCGTGAACAACGCGACCCTTACAGCGTTTTGCCTTGTGGATGGGTGCAGTTCTGAT CTTAGTAATTGTAGAGATTATCATAGGCGCCATAAGGTCTGCGAACTTCATTCCAAGACCCCAGAGGTCACAATTGGTGG CATGAAGCAAAGGTTCTGCCAACAATGTAGCAGGTTCCACTCGCTGGACCAATTTGATGAAAGAAAAAGAAGCTGCAGGA AACGTTTAGATGGACACAACCGACGTAGAAGAAAGCCTCAGCCAGAACCTCTCAAAGGACCGGGTAGTTTTTTGTCCAGT TACCAAGGAAGTCAGTTGCTACCCTTCTCAAGTTCCACTGCTATGGTGAATCCAGGTTGGAGTGGTGGACTTGTTACTTC CAATGCAGGTGGTAGGCTTCACAACCACAACCAGCACCAACAAGTGCAGCATTTGGTTGATGAACGAGATTTTTTTCTTG GATCTTCTCCAACAAGCTACAAAGAAGAGAAGCAACTCTCATTCTTACACAATGACAATCCCTCCTCTACCACAATTGAT AACCAACTTTCAGCTGCTTCTGTGAGCCACTTGCTTCTCAGGACAAGTTCAGTTCAGGACTCCCCTTGTGCTCTCTCTCT TCTGTCATCATCATATTCATCACAGACTCACGCACCTGGAAATGGTTTGGATCAAATGGTGCAGCCTCACGCAATGTCAA TGTCCCTTATGGAGCCATTAGGCCTGAGCCTGCATGATAATAACAGCAGCTTAGAGTCCATGGACCCAGTCTTGGTTCAT AGTGGGAGTGACCATTGTTCCTCAATGTATAACATGGGTTCTGATGGATCCCAGAGCAATGAAGCCCCTCAACTATTTCC TTTTCAATGGGAATAA
Protein sequence (LotjaGi1g1v0337200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDSSRIGVHRMKGVFSVDLKLGQVGNSSTEPALPKSKDAAAAEVSKMGSSFPSGSSKRARAVNNATLTAFCLVDGCSSD LSNCRDYHRRHKVCELHSKTPEVTIGGMKQRFCQQCSRFHSLDQFDERKRSCRKRLDGHNRRRRKPQPEPLKGPGSFLSS YQGSQLLPFSSSTAMVNPGWSGGLVTSNAGGRLHNHNQHQQVQHLVDERDFFLGSSPTSYKEEKQLSFLHNDNPSSTTID NQLSAASVSHLLLRTSSVQDSPCALSLLSSSYSSQTHAPGNGLDQMVQPHAMSMSLMEPLGLSLHDNNSSLESMDPVLVH SGSDHCSSMYNMGSDGSQSNEAPQLFPFQWE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 351 | 351 | 5.1E-144 | – | |
| PANTHER | 1 | 351 | 351 | 5.1E-144 | – | |
| Gene3D | 63 | 133 | 71 | 4.1E-32 | ||
| ProSiteProfiles | 69 | 146 | 78 | 31.599 | ||
| SUPERFAMILY | 70 | 151 | 82 | 1.96E-38 | ||
| Pfam | 72 | 145 | 74 | 2.8E-30 | ||
| MobiDBLite | 133 | 157 | 25 | - | – | |
| MobiDBLite | 331 | 351 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi1g1v0337200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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