Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR036893
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 31 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.281s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0337200.1
n.a. Squamosa promoter-binding-like protein; TAIR: AT5G50570.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; Swiss-Prot: sp|B9DI20|SP13A_ARATH Squamosa promoter-binding-like protein 13A; TrEMBL-Plants: tr|V7AW67|V7AW67_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0337200 LjG1.1_chr1 79763052 79767624 +
3 domain predictions
2 GO terms
LotjaGi1g1v0337200.2
n.a. Squamosa promoter-binding-like protein; TAIR: AT5G50570.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; Swiss-Prot: sp|B9DI20|SP13A_ARATH Squamosa promoter-binding-like protein 13A; TrEMBL-Plants: tr|V7AW67|V7AW67_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0337200 LjG1.1_chr1 79763097 79767596 +
3 domain predictions
2 GO terms
LotjaGi1g1v0337200.3
n.a. Squamosa promoter-binding-like protein; TAIR: AT5G50570.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; Swiss-Prot: sp|B9DI20|SP13A_ARATH Squamosa promoter-binding-like protein 13A; TrEMBL-Plants: tr|V7AW67|V7AW67_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0337200 LjG1.1_chr1 79763097 79767596 +
3 domain predictions
2 GO terms
LotjaGi1g1v0600600.1
n.a. Squamosa promoter-binding-like protein; TAIR: AT3G57920.1 squamosa promoter binding protein-like 15; Swiss-Prot: sp|Q01JD1|SPL7_ORYSI Squamosa promoter-binding-like protein 7; TrEMBL-Plants: tr|A0A072TXZ6|A0A072TXZ6_MEDTR Squamosa promoter-binding-like protein; Found in the gene: LotjaGi1g1v0600600 LjG1.1_chr1 114525692 114531503 +
3 domain predictions
2 GO terms
LotjaGi1g1v0626800.1
n.a. Squamosa promoter-binding-like protein; TAIR: AT5G50570.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; Swiss-Prot: sp|Q49I57|TGA1B_MAIZE Teosinte glume architecture 1; TrEMBL-Plants: tr|A0A151SPS7|A0A151SPS7_CAJCA Squamosa promoter-binding-like protein 16; Found in the gene: LotjaGi1g1v0626800 LjG1.1_chr1 117553121 117556785 -
3 domain predictions
2 GO terms
LotjaGi1g1v0626800.2
n.a. Squamosa promoter-binding-like protein; TAIR: AT5G50570.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; Swiss-Prot: sp|Q49I57|TGA1B_MAIZE Teosinte glume architecture 1; TrEMBL-Plants: tr|A0A151SPS7|A0A151SPS7_CAJCA Squamosa promoter-binding-like protein 16; Found in the gene: LotjaGi1g1v0626800 LjG1.1_chr1 117553189 117556446 -
3 domain predictions
2 GO terms
LotjaGi1g1v0755500.1
n.a. Squamosa promoter-binding-like protein; TAIR: AT3G60030.1 squamosa promoter-binding protein-like 12; Swiss-Prot: sp|Q9S7P5|SPL12_ARATH Squamosa promoter-binding-like protein 12; TrEMBL-Plants: tr|A0A0S3SQY1|A0A0S3SQY1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0755500 LjG1.1_chr1 132869345 132877261 +
3 domain predictions
2 GO terms
LotjaGi2g1v0013000.1
n.a. Squamosa promoter-binding-like protein; TAIR: AT1G20980.1 squamosa promoter binding protein-like 14; Swiss-Prot: sp|Q8RY95|SPL14_ARATH Squamosa promoter-binding-like protein 14; TrEMBL-Plants: tr|I1ND03|I1ND03_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0013000 LjG1.1_chr2 4740395 4747954 -
3 domain predictions
2 GO terms
LotjaGi2g1v0291800.1
n.a. Squamosa promoter-binding-like protein; TAIR: AT1G69170.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; Swiss-Prot: sp|Q94JW8|SPL6_ARATH Squamosa promoter-binding-like protein 6; TrEMBL-Plants: tr|K7K7W5|K7K7W5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0291800 LjG1.1_chr2 76589904 76595501 +
3 domain predictions
2 GO terms
LotjaGi3g1v0046300.1
n.a. Squamosa promoter-binding-like protein; TAIR: AT1G53160.1 squamosa promoter binding protein-like 4; Swiss-Prot: sp|Q38740|SBP2_ANTMA Squamosa promoter-binding protein 2; TrEMBL-Plants: tr|A0A151RJ48|A0A151RJ48_CAJCA Squamosa promoter-binding protein 2; Found in the gene: LotjaGi3g1v0046300 LjG1.1_chr3 4941171 4943010 -
3 domain predictions
2 GO terms
LotjaGi3g1v0063000.1
n.a. Squamosa promoter-binding-like protein; TAIR: AT1G02065.1 squamosa promoter binding protein-like 8; Swiss-Prot: sp|Q8GXL3|SPL8_ARATH Squamosa promoter-binding-like protein 8; TrEMBL-Plants: tr|V7ALZ4|V7ALZ4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0063000 LjG1.1_chr3 6663391 6667099 -
3 domain predictions
2 GO terms
LotjaGi3g1v0445900_LC.1
n.a. Squamosa promoter binding-like protein; TAIR: AT1G02065.2 squamosa promoter binding protein-like 8; Swiss-Prot: sp|Q9S7P5|SPL12_ARATH Squamosa promoter-binding-like protein 12; TrEMBL-Plants: tr|E0CTG4|E0CTG4_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0445900_LC LjG1.1_chr3 85918844 85920747 +
3 domain predictions
2 GO terms
LotjaGi3g1v0445900_LC.2
n.a. Squamosa promoter binding-like protein; TAIR: AT1G53160.1 squamosa promoter binding protein-like 4; Swiss-Prot: sp|Q9S7A9|SPL4_ARATH Squamosa promoter-binding-like protein 4; TrEMBL-Plants: tr|E0CTG4|E0CTG4_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0445900_LC LjG1.1_chr3 85919065 85920877 +
3 domain predictions
2 GO terms
LotjaGi4g1v0058300.1
n.a. Squamosa promoter-binding-like protein; TAIR: AT2G33810.1 squamosa promoter binding protein-like 3; Swiss-Prot: sp|Q38741|SBP1_ANTMA Squamosa promoter-binding protein 1; TrEMBL-Plants: tr|A0A151RAJ5|A0A151RAJ5_CAJCA Squamosa promoter-binding-like protein; Found in the gene: LotjaGi4g1v0058300 LjG1.1_chr4 7016635 7020722 -
3 domain predictions
2 GO terms
LotjaGi4g1v0256400.1
n.a. Squamosa promoter-binding-like protein; TAIR: AT1G69170.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; Swiss-Prot: sp|Q94JW8|SPL6_ARATH Squamosa promoter-binding-like protein 6; TrEMBL-Plants: tr|A0A0L9TSL5|A0A0L9TSL5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0256400 LjG1.1_chr4 61086640 61091251 -
3 domain predictions
2 GO terms
LotjaGi4g1v0366400.1
n.a. Squamosa promoter-binding-like protein; TAIR: AT5G43270.1 squamosa promoter binding protein-like 2; Swiss-Prot: sp|A2YGR5|SPL12_ORYSI Squamosa promoter-binding-like protein 12; TrEMBL-Plants: tr|A0A1J7GZ95|A0A1J7GZ95_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0366400 LjG1.1_chr4 74610340 74615912 -
3 domain predictions
2 GO terms
LotjaGi4g1v0366400.2
n.a. Squamosa promoter-binding-like protein; TAIR: AT5G43270.1 squamosa promoter binding protein-like 2; Swiss-Prot: sp|A2YGR5|SPL12_ORYSI Squamosa promoter-binding-like protein 12; TrEMBL-Plants: tr|A0A1J7GZ95|A0A1J7GZ95_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0366400 LjG1.1_chr4 74610386 74615679 -
3 domain predictions
2 GO terms
LotjaGi4g1v0418100.1
n.a. Squamosa promoter-binding-like protein; TAIR: AT5G50570.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; Swiss-Prot: sp|B9DI20|SP13A_ARATH Squamosa promoter-binding-like protein 13A; TrEMBL-Plants: tr|A0A1J7ISV6|A0A1J7ISV6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0418100 LjG1.1_chr4 79340212 79346409 -
3 domain predictions
2 GO terms
LotjaGi4g1v0418100.2
n.a. Squamosa promoter-binding-like protein; TAIR: AT5G50570.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; Swiss-Prot: sp|B9DI20|SP13A_ARATH Squamosa promoter-binding-like protein 13A; TrEMBL-Plants: tr|A0A1J7ISV6|A0A1J7ISV6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0418100 LjG1.1_chr4 79340297 79346409 -
3 domain predictions
2 GO terms
LotjaGi5g1v0141700.1
n.a. Squamosa promoter-binding-like protein; TAIR: AT2G42200.1 squamosa promoter binding protein-like 9; Swiss-Prot: sp|Q700W2|SPL9_ARATH Squamosa promoter-binding-like protein 9; TrEMBL-Plants: tr|I1N969|I1N969_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0141700 LjG1.1_chr5 35154751 35160458 +
3 domain predictions
2 GO terms
LotjaGi5g1v0240200.1
n.a. Squamosa promoter-binding-like protein; TAIR: AT2G47070.1 squamosa promoter binding protein-like 1; Swiss-Prot: sp|Q9SMX9|SPL1_ARATH Squamosa promoter-binding-like protein 1; TrEMBL-Plants: tr|A0A0S3SQY1|A0A0S3SQY1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0240200 LjG1.1_chr5 54841308 54849627 +
3 domain predictions
2 GO terms
LotjaGi5g1v0240200.2
n.a. Squamosa promoter-binding-like protein; TAIR: AT2G47070.1 squamosa promoter binding protein-like 1; Swiss-Prot: sp|Q9SMX9|SPL1_ARATH Squamosa promoter-binding-like protein 1; TrEMBL-Plants: tr|A0A0S3SQY1|A0A0S3SQY1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0240200 LjG1.1_chr5 54841761 54849563 +
3 domain predictions
2 GO terms
LotjaGi5g1v0240200.3
n.a. Squamosa promoter-binding-like protein; TAIR: AT2G47070.1 squamosa promoter binding protein-like 1; Swiss-Prot: sp|Q9SMX9|SPL1_ARATH Squamosa promoter-binding-like protein 1; TrEMBL-Plants: tr|A0A0S3SQY1|A0A0S3SQY1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0240200 LjG1.1_chr5 54842156 54849198 +
3 domain predictions
2 GO terms
LotjaGi6g1v0101700.1
n.a. Squamosa promoter-binding-like protein; TAIR: AT1G27360.1 squamosa promoter-like 11; Swiss-Prot: sp|A2YGR5|SPL12_ORYSI Squamosa promoter-binding-like protein 12; TrEMBL-Plants: tr|K7MP80|K7MP80_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0101700 LjG1.1_chr6 22361810 22368532 +
3 domain predictions
2 GO terms
LotjaGi6g1v0101700.2
n.a. Squamosa promoter-binding-like protein; TAIR: AT1G27360.1 squamosa promoter-like 11; Swiss-Prot: sp|A2YGR5|SPL12_ORYSI Squamosa promoter-binding-like protein 12; TrEMBL-Plants: tr|K7MP80|K7MP80_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0101700 LjG1.1_chr6 22361922 22368351 +
3 domain predictions
2 GO terms
LotjaGi6g1v0101700.3
n.a. Squamosa promoter-binding-like protein; TAIR: AT1G27360.1 squamosa promoter-like 11; Swiss-Prot: sp|A2YGR5|SPL12_ORYSI Squamosa promoter-binding-like protein 12; TrEMBL-Plants: tr|K7MP80|K7MP80_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0101700 LjG1.1_chr6 22363048 22368353 +
3 domain predictions
2 GO terms
LotjaGi6g1v0216500_LC.1
n.a. Squamosa promoter-binding-like protein; TAIR: AT3G60030.1 squamosa promoter-binding protein-like 12; Swiss-Prot: sp|Q9S7P5|SPL12_ARATH Squamosa promoter-binding-like protein 12; TrEMBL-Plants: tr|A0A0B2RD06|A0A0B2RD06_GLYSO Squamosa promoter-binding-like protein 1; Found in the gene: LotjaGi6g1v0216500_LC LjG1.1_chr6 51834859 51843977 -
2 domain predictions
2 GO terms
LotjaGi6g1v0216500_LC.2
n.a. Squamosa promoter-binding-like protein; TAIR: AT3G60030.1 squamosa promoter-binding protein-like 12; Swiss-Prot: sp|Q9S7P5|SPL12_ARATH Squamosa promoter-binding-like protein 12; TrEMBL-Plants: tr|A0A0B2RD06|A0A0B2RD06_GLYSO Squamosa promoter-binding-like protein 1; Found in the gene: LotjaGi6g1v0216500_LC LjG1.1_chr6 51834859 51843977 -
3 domain predictions
2 GO terms
LotjaGi6g1v0216500_LC.3
n.a. Squamosa promoter-binding-like protein; TAIR: AT2G47070.1 squamosa promoter binding protein-like 1; Swiss-Prot: sp|Q9SMX9|SPL1_ARATH Squamosa promoter-binding-like protein 1; TrEMBL-Plants: tr|A0A0B2PQL9|A0A0B2PQL9_GLYSO Squamosa promoter-binding-like protein 12; Found in the gene: LotjaGi6g1v0216500_LC LjG1.1_chr6 51834859 51843977 -
3 domain predictions
2 GO terms
LotjaGi6g1v0304200.1
n.a. Squamosa promoter-binding-like protein; TAIR: AT5G18830.2 squamosa promoter binding protein-like 7; Swiss-Prot: sp|Q8S9G8|SPL7_ARATH Squamosa promoter-binding-like protein 7; TrEMBL-Plants: tr|A0A1J7GNC3|A0A1J7GNC3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0304200 LjG1.1_chr6 62160983 62168476 -
3 domain predictions
2 GO terms
LotjaGi6g1v0329900.1
n.a. Squamosa promoter-binding-like protein; TAIR: AT1G20980.1 squamosa promoter binding protein-like 14; Swiss-Prot: sp|Q38741|SBP1_ANTMA Squamosa promoter-binding protein 1; TrEMBL-Plants: tr|I3S8Q2|I3S8Q2_LOTJA Squamosa promoter-binding-like protein; Found in the gene: LotjaGi6g1v0329900 LjG1.1_chr6 64512007 64514484 -
3 domain predictions
2 GO terms