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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0338200 |
| Transcript ID | LotjaGi1g1v0338200.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nodulin-like / Major Facilitator Superfamily protein; TAIR: AT5G14120.1 Major facilitator superfamily protein; Swiss-Prot: sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4; TrEMBL-Plants: tr|A0A0L9UCX5|A0A0L9UCX5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0338200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:79864558..79868067) extracted from Lotus japonicus Gifu genome v1.2.
GAGTTTGTCACTATCTGGTGGTACATATTTTTTTATTACAGAAATATAATAATAGACATGTAATTGCAGATATCAAATAT CAAAAGACTTTATAATAGTGAACTGCACAGATCAAAAGTCTCAACTCCAACATCATTTTAAGACAACACAAGACAAGATA AGATGGTTTCACTGCAGGAGAAGTTGAAGACGTTTGTGAATCACAGATGGCTGGTGTTTGTGTGTGCCATGTGGGACATG TCATTTGCAGGAACCTCGTACATGTTTGGGAGCATATCACCAGTGATAAAGAGCAGCATGGGTTTCAATCAGAAGCAGGT GGCTTTCTTGAGCGTGGCCAAGGATTTGGGTGACAACGTTGGGCTTCTGGCAGGGTTAATCAGCGAGCAATGGCCCCCTT GGCGAGTTATACTTGTTGGGGTTGTTCAGAATGTTGTTGGTTATGGCATCGTTTGGCTTGTTGTCACACACAGGTTCCCT TCTTTGCCTTTGTGGGCGGTGAGTAACTTCACTTCCATAGCCAAAAACTCTGTTAATTGTCACTTAATTTGAATGTTCTG TTTGCAGTTTTTAAGTACCATAATTTGTTGAATCACTACGGACGACTGGTGGTTGAGTTCAAGTGGTACATGTTTGATTC AAGTCGTCTCAGGTTCAGTTTTGTATATGTAGATAATTTTACAGATGCTTTGGATTTCGGTATCATTTAAGGACCCGTTT AGAAGAGTTTATTTGAAGTTTATTTTATAGTATAAGAGTTTATGCAAGTGTTTAAGAGAATTTTTGTAAATAGCTTATAA TTTATCTGTAAGTTGTTTTGAACTCATTTTCATTAGTTGTTTAGAACATCTTATGAATAAGATTTTATCCATAACCTATT TTCAACTTATTTCCAAAAATTCCTCAAATTAACTTACGAATAAGCGCTTATGCGATAAATGTTTATTGCCATAAGCTCCC AATTAAGCTGTTTACCTAAAGTCACCCTAAATGTGAAAATGAACCTAGTGACCCTCATTCACAAAGTTAAAGATGATATA TAAAAAGCTAGAATCTTTCAGTTGAAGTTGAGATTTATGGTTGTTTTCATTTTCAACATGATTAGCTGTGTGTATGAGCT GTGATGTGCATTCTCACACTTTGAAGAAAATTCATTTCATTGCAGTAAAATTGGCTAACCAGGCATTGATTTGCAGCTAT GCATTTTCATATTTGTGGGACAAAATGGCTGTACCTATTACAACACAGCTGCTCTAGTTTCCTCCGTGCAAAGCTTCCCG GAAAGCAGAGGACCCGTGGTGGGGATATTGAAGGGCTTTGTTGGCTTAAGCGGTGCAATTTGGACTCAAATAATAGCTAT GATCAATCTCCCTGATCAGGCATCTCTGATTTTCATTATGGCAGTTGGACCCGCTATGGTTTCTTTCACCCTCATGTTCA TCATAAGACCAGTCCATAATTACCAACAATCTAGAGCTTCTGATAGTTCAGGCTTCATGTTTATCTACAGCATTTGCCTT CTCTTGGCTGCTTATCTGATGGGAGTTTTACTGCTACAGAATATGTTGGTTTTGGACCAAAGCATCATCACTTTATTTGC AGTTATTTTGATCATTTTCATATTGCTTCCAATTATTGTTCCCATTGTATTGGTTTTCTTCTCGGAACCGAAAAGTCCTG ACGAGGAAACCCTTCTCGAGCCACCAATCCCAACATCAAGTAAAACTATTCATGTGATTGCTGAGACTAGTAATGGTGCC AAACATGTTGAAGAAGAGAAGCCTCCAAAGCTTGAGGTGCTTCCATTATCAGAAGGGCCAAGGGACATTGTTCAAGTTCA TGCCAAACTTTTCCAAGCAGTCACTGCAGCTCTGAAGAAAATCAAACAAAAGAATGGCCCCCGTAGAGGAGAGGATTTCA CCTTAACTCAGGCTTTTGCGAAGGCTGATTTTTGGATCATGTTCTTATCCCTCCTGTTGGGTTGTGGATCAGGCTTGACA ATGATAAACAACATGGGACAGATTTGTCAATCGTTGGGAGATCACAATGTCAATGTGTATGTATCTATTATTAGCATATC GAACTTCCTCGGTCGTGTTGGTGGCGGCTTCTTCTCAGAGGTTATAGTAAGGTATAGTCACTACTCTTTTTGTTTTTCGT ATTTTTGCGCACGATGGAGCATAAAATTGACAATCAACCATGATTTCTGTCAAATAACACAGTTAGCGTTGCCACATCAG CATTTCTTGCAACTTTCTTTCGTAACATATAGCATTGCTGTTTAAAAATTAATGTAAAAGTGCTCTTTTGTGCGATTTTT TTAACAGAAATTTTGCGTACCCGAGACTTGCTGCCTTAGCATTGGTTCAGGCACTGATGTCTTTTGGGCTTTGCTACTAT GTCTTTGGCTTGGTTGGACAAGTTTATGTGGTGGCTATATCTATGGGTTTTGGGTATGGTGCCCACTGGTCAATTGCATT AGCTGCAACTTCAGAAGTGTTTGGATTGAAGAACTTTGGAACTTTGTACAACTTTCTTACCATGGCTAGCCCTGCTGGAT CTCTGCTTATATCTGCATTGTCCAGCACAATCTATGACTATTATGCAGAGCAACAAGCAAAGCATCGAATTCATACCTAT GGAGCCTTGAGGAACTTTGCCATGCCTTATAACAGTACTGGAAATAATGAATTGCTTCTTTGTGAGGGAAACATATGTTA TTCCATTACATGTGGAATCTTAGCAGTAGTTTGCCTGTTTGCAGCTGCTTTGAGCTTGATCATAGTTCACCGGACTAAGA GGTTCTATGCTCAACTTTATGTGAAGTGTCAATCTTGATTGGGGAAAGCAGAGAATAACTTGCAATAAGACTGTCACCAA GGTTTGAATATTAGGTGAAATTTTCATGTGAAAATAGATAAGTGTTCTCTAGTCAAAATTTATTAAGAAACTGATATAAA TTTTTACATGGTGAAGTCATGTAAATAGGATGAGAGGATCCATTTCCATTCCATTGTATAGATAGTTTGCCTTGTTGATC TCTTTGTTAGGTTCATGCCTTCATGGCCTTTTATGTTTAATATAGATGGCCATTGTCAAAGGTTTTTTTATAGGGCAAAT GTTAGTTGTTAGTAATGTTAGTAAATAAGTCCCTACTCAGGTCTGAACCCTTCACCCTTCACCTTCATTCCCTCCAACTC TTATGTCCTCTAGCTCTTGCCTTGAGTTAACCCTCGGGACATTGTCAAAGGTTTTAATATACATTCCCTATATCAATCTT ACATAGTCGTGAATTCCTTATTGACATTGTTTATATGAGTAAATTTTTGGGGACCGGATCCTACCATGCTGTTTGACCAT GTCATGTTAAAATTTATATACATTTATTTCTTGAATATTTATAGAGTCTCACTTATTTAATATATGCCAAGAGAGAAACT AACTTATAACTTTAACATAACAAGTCATATGGGAGGATCGAGATACAAATTTGGAGTTGAGATGTGTGGG
CDS sequence (LotjaGi1g1v0338200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCAATCTCCCTGATCAGGCATCTCTGATTTTCATTATGGCAGTTGGACCCGCTATGGTTTCTTTCACCCTCATGTT CATCATAAGACCAGTCCATAATTACCAACAATCTAGAGCTTCTGATAGTTCAGGCTTCATGTTTATCTACAGCATTTGCC TTCTCTTGGCTGCTTATCTGATGGGAGTTTTACTGCTACAGAATATGTTGGTTTTGGACCAAAGCATCATCACTTTATTT GCAGTTATTTTGATCATTTTCATATTGCTTCCAATTATTGTTCCCATTGTATTGGTTTTCTTCTCGGAACCGAAAAGTCC TGACGAGGAAACCCTTCTCGAGCCACCAATCCCAACATCAAGTAAAACTATTCATGTGATTGCTGAGACTAGTAATGGTG CCAAACATGTTGAAGAAGAGAAGCCTCCAAAGCTTGAGGTGCTTCCATTATCAGAAGGGCCAAGGGACATTGTTCAAGTT CATGCCAAACTTTTCCAAGCAGTCACTGCAGCTCTGAAGAAAATCAAACAAAAGAATGGCCCCCGTAGAGGAGAGGATTT CACCTTAACTCAGGCTTTTGCGAAGGCTGATTTTTGGATCATGTTCTTATCCCTCCTGTTGGGTTGTGGATCAGGCTTGA CAATGATAAACAACATGGGACAGATTTGTCAATCGTTGGGAGATCACAATGTCAATGTGTATGTATCTATTATTAGCATA TCGAACTTCCTCGGTCGTGTTGGTGGCGGCTTCTTCTCAGAGGTTATAGTAAGAAATTTTGCGTACCCGAGACTTGCTGC CTTAGCATTGGTTCAGGCACTGATGTCTTTTGGGCTTTGCTACTATGTCTTTGGCTTGGTTGGACAAGTTTATGTGGTGG CTATATCTATGGGTTTTGGGTATGGTGCCCACTGGTCAATTGCATTAGCTGCAACTTCAGAAGTGTTTGGATTGAAGAAC TTTGGAACTTTGTACAACTTTCTTACCATGGCTAGCCCTGCTGGATCTCTGCTTATATCTGCATTGTCCAGCACAATCTA TGACTATTATGCAGAGCAACAAGCAAAGCATCGAATTCATACCTATGGAGCCTTGAGGAACTTTGCCATGCCTTATAACA GTACTGGAAATAATGAATTGCTTCTTTGTGAGGGAAACATATGTTATTCCATTACATGTGGAATCTTAGCAGTAGTTTGC CTGTTTGCAGCTGCTTTGAGCTTGATCATAGTTCACCGGACTAAGAGGTTCTATGCTCAACTTTATGTGAAGTGTCAATC TTGA
Protein sequence (LotjaGi1g1v0338200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MINLPDQASLIFIMAVGPAMVSFTLMFIIRPVHNYQQSRASDSSGFMFIYSICLLLAAYLMGVLLLQNMLVLDQSIITLF AVILIIFILLPIIVPIVLVFFSEPKSPDEETLLEPPIPTSSKTIHVIAETSNGAKHVEEEKPPKLEVLPLSEGPRDIVQV HAKLFQAVTAALKKIKQKNGPRRGEDFTLTQAFAKADFWIMFLSLLLGCGSGLTMINNMGQICQSLGDHNVNVYVSIISI SNFLGRVGGGFFSEVIVRNFAYPRLAALALVQALMSFGLCYYVFGLVGQVYVVAISMGFGYGAHWSIALAATSEVFGLKN FGTLYNFLTMASPAGSLLISALSSTIYDYYAEQQAKHRIHTYGALRNFAMPYNSTGNNELLLCEGNICYSITCGILAVVC LFAAALSLIIVHRTKRFYAQLYVKCQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 425 | 425 | 9.4E-192 | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 1 | 425 | 425 | 9.4E-192 | – | |
| Pfam | 2 | 96 | 95 | 4.1E-16 | ||
| TMHMM | 10 | 32 | 23 | - | – | |
| Phobius | 12 | 33 | 22 | - | – | |
| SUPERFAMILY | 12 | 417 | 406 | 1.09E-19 | ||
| Phobius | 34 | 44 | 11 | - | – | |
| TMHMM | 44 | 66 | 23 | - | – | |
| Phobius | 45 | 70 | 26 | - | – | |
| Phobius | 71 | 75 | 5 | - | – | |
| TMHMM | 76 | 98 | 23 | - | – | |
| Phobius | 76 | 101 | 26 | - | – | |
| Phobius | 102 | 197 | 96 | - | – | |
| CDD | 190 | 404 | 215 | 9.58332E-58 | – | |
| Phobius | 198 | 219 | 22 | - | – | |
| TMHMM | 198 | 220 | 23 | - | – | |
| Phobius | 220 | 230 | 11 | - | – | |
| Phobius | 231 | 253 | 23 | - | – | |
| TMHMM | 235 | 257 | 23 | - | – | |
| Phobius | 254 | 264 | 11 | - | – | |
| TMHMM | 264 | 286 | 23 | - | – | |
| Phobius | 265 | 284 | 20 | - | – | |
| Phobius | 285 | 289 | 5 | - | – | |
| Phobius | 290 | 312 | 23 | - | – | |
| TMHMM | 290 | 312 | 23 | - | – | |
| Phobius | 313 | 323 | 11 | - | – | |
| Phobius | 324 | 347 | 24 | - | – | |
| TMHMM | 324 | 346 | 23 | - | – | |
| Phobius | 348 | 388 | 41 | - | – | |
| TMHMM | 387 | 409 | 23 | - | – | |
| Phobius | 389 | 411 | 23 | - | – | |
| Phobius | 412 | 427 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0338200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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