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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0338200 |
| Transcript ID | LotjaGi1g1v0338200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nodulin-like / Major Facilitator Superfamily protein; TAIR: AT3G01930.2 Major facilitator superfamily protein; Swiss-Prot: sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4; TrEMBL-Plants: tr|A0A0L9UCX5|A0A0L9UCX5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0338200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:79864558..79868067) extracted from Lotus japonicus Gifu genome v1.2.
GAGTTTGTCACTATCTGGTGGTACATATTTTTTTATTACAGAAATATAATAATAGACATGTAATTGCAGATATCAAATAT CAAAAGACTTTATAATAGTGAACTGCACAGATCAAAAGTCTCAACTCCAACATCATTTTAAGACAACACAAGACAAGATA AGATGGTTTCACTGCAGGAGAAGTTGAAGACGTTTGTGAATCACAGATGGCTGGTGTTTGTGTGTGCCATGTGGGACATG TCATTTGCAGGAACCTCGTACATGTTTGGGAGCATATCACCAGTGATAAAGAGCAGCATGGGTTTCAATCAGAAGCAGGT GGCTTTCTTGAGCGTGGCCAAGGATTTGGGTGACAACGTTGGGCTTCTGGCAGGGTTAATCAGCGAGCAATGGCCCCCTT GGCGAGTTATACTTGTTGGGGTTGTTCAGAATGTTGTTGGTTATGGCATCGTTTGGCTTGTTGTCACACACAGGTTCCCT TCTTTGCCTTTGTGGGCGGTGAGTAACTTCACTTCCATAGCCAAAAACTCTGTTAATTGTCACTTAATTTGAATGTTCTG TTTGCAGTTTTTAAGTACCATAATTTGTTGAATCACTACGGACGACTGGTGGTTGAGTTCAAGTGGTACATGTTTGATTC AAGTCGTCTCAGGTTCAGTTTTGTATATGTAGATAATTTTACAGATGCTTTGGATTTCGGTATCATTTAAGGACCCGTTT AGAAGAGTTTATTTGAAGTTTATTTTATAGTATAAGAGTTTATGCAAGTGTTTAAGAGAATTTTTGTAAATAGCTTATAA TTTATCTGTAAGTTGTTTTGAACTCATTTTCATTAGTTGTTTAGAACATCTTATGAATAAGATTTTATCCATAACCTATT TTCAACTTATTTCCAAAAATTCCTCAAATTAACTTACGAATAAGCGCTTATGCGATAAATGTTTATTGCCATAAGCTCCC AATTAAGCTGTTTACCTAAAGTCACCCTAAATGTGAAAATGAACCTAGTGACCCTCATTCACAAAGTTAAAGATGATATA TAAAAAGCTAGAATCTTTCAGTTGAAGTTGAGATTTATGGTTGTTTTCATTTTCAACATGATTAGCTGTGTGTATGAGCT GTGATGTGCATTCTCACACTTTGAAGAAAATTCATTTCATTGCAGTAAAATTGGCTAACCAGGCATTGATTTGCAGCTAT GCATTTTCATATTTGTGGGACAAAATGGCTGTACCTATTACAACACAGCTGCTCTAGTTTCCTCCGTGCAAAGCTTCCCG GAAAGCAGAGGACCCGTGGTGGGGATATTGAAGGGCTTTGTTGGCTTAAGCGGTGCAATTTGGACTCAAATAATAGCTAT GATCAATCTCCCTGATCAGGCATCTCTGATTTTCATTATGGCAGTTGGACCCGCTATGGTTTCTTTCACCCTCATGTTCA TCATAAGACCAGTCCATAATTACCAACAATCTAGAGCTTCTGATAGTTCAGGCTTCATGTTTATCTACAGCATTTGCCTT CTCTTGGCTGCTTATCTGATGGGAGTTTTACTGCTACAGAATATGTTGGTTTTGGACCAAAGCATCATCACTTTATTTGC AGTTATTTTGATCATTTTCATATTGCTTCCAATTATTGTTCCCATTGTATTGGTTTTCTTCTCGGAACCGAAAAGTCCTG ACGAGGAAACCCTTCTCGAGCCACCAATCCCAACATCAAGTAAAACTATTCATGTGATTGCTGAGACTAGTAATGGTGCC AAACATGTTGAAGAAGAGAAGCCTCCAAAGCTTGAGGTGCTTCCATTATCAGAAGGGCCAAGGGACATTGTTCAAGTTCA TGCCAAACTTTTCCAAGCAGTCACTGCAGCTCTGAAGAAAATCAAACAAAAGAATGGCCCCCGTAGAGGAGAGGATTTCA CCTTAACTCAGGCTTTTGCGAAGGCTGATTTTTGGATCATGTTCTTATCCCTCCTGTTGGGTTGTGGATCAGGCTTGACA ATGATAAACAACATGGGACAGATTTGTCAATCGTTGGGAGATCACAATGTCAATGTGTATGTATCTATTATTAGCATATC GAACTTCCTCGGTCGTGTTGGTGGCGGCTTCTTCTCAGAGGTTATAGTAAGGTATAGTCACTACTCTTTTTGTTTTTCGT ATTTTTGCGCACGATGGAGCATAAAATTGACAATCAACCATGATTTCTGTCAAATAACACAGTTAGCGTTGCCACATCAG CATTTCTTGCAACTTTCTTTCGTAACATATAGCATTGCTGTTTAAAAATTAATGTAAAAGTGCTCTTTTGTGCGATTTTT TTAACAGAAATTTTGCGTACCCGAGACTTGCTGCCTTAGCATTGGTTCAGGCACTGATGTCTTTTGGGCTTTGCTACTAT GTCTTTGGCTTGGTTGGACAAGTTTATGTGGTGGCTATATCTATGGGTTTTGGGTATGGTGCCCACTGGTCAATTGCATT AGCTGCAACTTCAGAAGTGTTTGGATTGAAGAACTTTGGAACTTTGTACAACTTTCTTACCATGGCTAGCCCTGCTGGAT CTCTGCTTATATCTGCATTGTCCAGCACAATCTATGACTATTATGCAGAGCAACAAGCAAAGCATCGAATTCATACCTAT GGAGCCTTGAGGAACTTTGCCATGCCTTATAACAGTACTGGAAATAATGAATTGCTTCTTTGTGAGGGAAACATATGTTA TTCCATTACATGTGGAATCTTAGCAGTAGTTTGCCTGTTTGCAGCTGCTTTGAGCTTGATCATAGTTCACCGGACTAAGA GGTTCTATGCTCAACTTTATGTGAAGTGTCAATCTTGATTGGGGAAAGCAGAGAATAACTTGCAATAAGACTGTCACCAA GGTTTGAATATTAGGTGAAATTTTCATGTGAAAATAGATAAGTGTTCTCTAGTCAAAATTTATTAAGAAACTGATATAAA TTTTTACATGGTGAAGTCATGTAAATAGGATGAGAGGATCCATTTCCATTCCATTGTATAGATAGTTTGCCTTGTTGATC TCTTTGTTAGGTTCATGCCTTCATGGCCTTTTATGTTTAATATAGATGGCCATTGTCAAAGGTTTTTTTATAGGGCAAAT GTTAGTTGTTAGTAATGTTAGTAAATAAGTCCCTACTCAGGTCTGAACCCTTCACCCTTCACCTTCATTCCCTCCAACTC TTATGTCCTCTAGCTCTTGCCTTGAGTTAACCCTCGGGACATTGTCAAAGGTTTTAATATACATTCCCTATATCAATCTT ACATAGTCGTGAATTCCTTATTGACATTGTTTATATGAGTAAATTTTTGGGGACCGGATCCTACCATGCTGTTTGACCAT GTCATGTTAAAATTTATATACATTTATTTCTTGAATATTTATAGAGTCTCACTTATTTAATATATGCCAAGAGAGAAACT AACTTATAACTTTAACATAACAAGTCATATGGGAGGATCGAGATACAAATTTGGAGTTGAGATGTGTGGG
CDS sequence (LotjaGi1g1v0338200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTCACTGCAGGAGAAGTTGAAGACGTTTGTGAATCACAGATGGCTGGTGTTTGTGTGTGCCATGTGGGACATGTC ATTTGCAGGAACCTCGTACATGTTTGGGAGCATATCACCAGTGATAAAGAGCAGCATGGGTTTCAATCAGAAGCAGGTGG CTTTCTTGAGCGTGGCCAAGGATTTGGGTGACAACGTTGGGCTTCTGGCAGGGTTAATCAGCGAGCAATGGCCCCCTTGG CGAGTTATACTTGTTGGGGTTGTTCAGAATGTTGTTGGTTATGGCATCGTTTGGCTTGTTGTCACACACAGGTTCCCTTC TTTGCCTTTGTGGGCGCTATGCATTTTCATATTTGTGGGACAAAATGGCTGTACCTATTACAACACAGCTGCTCTAGTTT CCTCCGTGCAAAGCTTCCCGGAAAGCAGAGGACCCGTGGTGGGGATATTGAAGGGCTTTGTTGGCTTAAGCGGTGCAATT TGGACTCAAATAATAGCTATGATCAATCTCCCTGATCAGGCATCTCTGATTTTCATTATGGCAGTTGGACCCGCTATGGT TTCTTTCACCCTCATGTTCATCATAAGACCAGTCCATAATTACCAACAATCTAGAGCTTCTGATAGTTCAGGCTTCATGT TTATCTACAGCATTTGCCTTCTCTTGGCTGCTTATCTGATGGGAGTTTTACTGCTACAGAATATGTTGGTTTTGGACCAA AGCATCATCACTTTATTTGCAGTTATTTTGATCATTTTCATATTGCTTCCAATTATTGTTCCCATTGTATTGGTTTTCTT CTCGGAACCGAAAAGTCCTGACGAGGAAACCCTTCTCGAGCCACCAATCCCAACATCAAGTAAAACTATTCATGTGATTG CTGAGACTAGTAATGGTGCCAAACATGTTGAAGAAGAGAAGCCTCCAAAGCTTGAGGTGCTTCCATTATCAGAAGGGCCA AGGGACATTGTTCAAGTTCATGCCAAACTTTTCCAAGCAGTCACTGCAGCTCTGAAGAAAATCAAACAAAAGAATGGCCC CCGTAGAGGAGAGGATTTCACCTTAACTCAGGCTTTTGCGAAGGCTGATTTTTGGATCATGTTCTTATCCCTCCTGTTGG GTTGTGGATCAGGCTTGACAATGATAAACAACATGGGACAGATTTGTCAATCGTTGGGAGATCACAATGTCAATGTGTAT GTATCTATTATTAGCATATCGAACTTCCTCGGTCGTGTTGGTGGCGGCTTCTTCTCAGAGGTTATAGTAAGAAATTTTGC GTACCCGAGACTTGCTGCCTTAGCATTGGTTCAGGCACTGATGTCTTTTGGGCTTTGCTACTATGTCTTTGGCTTGGTTG GACAAGTTTATGTGGTGGCTATATCTATGGGTTTTGGGTATGGTGCCCACTGGTCAATTGCATTAGCTGCAACTTCAGAA GTGTTTGGATTGAAGAACTTTGGAACTTTGTACAACTTTCTTACCATGGCTAGCCCTGCTGGATCTCTGCTTATATCTGC ATTGTCCAGCACAATCTATGACTATTATGCAGAGCAACAAGCAAAGCATCGAATTCATACCTATGGAGCCTTGAGGAACT TTGCCATGCCTTATAACAGTACTGGAAATAATGAATTGCTTCTTTGTGAGGGAAACATATGTTATTCCATTACATGTGGA ATCTTAGCAGTAGTTTGCCTGTTTGCAGCTGCTTTGAGCTTGATCATAGTTCACCGGACTAAGAGGTTCTATGCTCAACT TTATGTGAAGTGTCAATCTTGA
Protein sequence (LotjaGi1g1v0338200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSLQEKLKTFVNHRWLVFVCAMWDMSFAGTSYMFGSISPVIKSSMGFNQKQVAFLSVAKDLGDNVGLLAGLISEQWPPW RVILVGVVQNVVGYGIVWLVVTHRFPSLPLWALCIFIFVGQNGCTYYNTAALVSSVQSFPESRGPVVGILKGFVGLSGAI WTQIIAMINLPDQASLIFIMAVGPAMVSFTLMFIIRPVHNYQQSRASDSSGFMFIYSICLLLAAYLMGVLLLQNMLVLDQ SIITLFAVILIIFILLPIIVPIVLVFFSEPKSPDEETLLEPPIPTSSKTIHVIAETSNGAKHVEEEKPPKLEVLPLSEGP RDIVQVHAKLFQAVTAALKKIKQKNGPRRGEDFTLTQAFAKADFWIMFLSLLLGCGSGLTMINNMGQICQSLGDHNVNVY VSIISISNFLGRVGGGFFSEVIVRNFAYPRLAALALVQALMSFGLCYYVFGLVGQVYVVAISMGFGYGAHWSIALAATSE VFGLKNFGTLYNFLTMASPAGSLLISALSSTIYDYYAEQQAKHRIHTYGALRNFAMPYNSTGNNELLLCEGNICYSITCG ILAVVCLFAAALSLIIVHRTKRFYAQLYVKCQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 15 | 15 | - | – | |
| PANTHER | 2 | 591 | 590 | 2.4E-295 | – | |
| PANTHER | 2 | 591 | 590 | 2.4E-295 | – | |
| Gene3D | 5 | 201 | 197 | 1.1E-6 | – | |
| SUPERFAMILY | 7 | 582 | 576 | 6.98E-27 | ||
| CDD | 14 | 570 | 557 | 2.75676E-114 | – | |
| Pfam | 15 | 262 | 248 | 1.6E-86 | ||
| Phobius | 16 | 36 | 21 | - | – | |
| TMHMM | 16 | 38 | 23 | - | – | |
| Phobius | 37 | 81 | 45 | - | – | |
| TMHMM | 79 | 101 | 23 | - | – | |
| Phobius | 82 | 102 | 21 | - | – | |
| Phobius | 103 | 107 | 5 | - | – | |
| TMHMM | 108 | 130 | 23 | - | – | |
| Phobius | 108 | 127 | 20 | - | – | |
| Phobius | 128 | 147 | 20 | - | – | |
| TMHMM | 145 | 167 | 23 | - | – | |
| Phobius | 148 | 168 | 21 | - | – | |
| Phobius | 169 | 173 | 5 | - | – | |
| Phobius | 174 | 194 | 21 | - | – | |
| TMHMM | 174 | 195 | 22 | - | – | |
| Phobius | 195 | 213 | 19 | - | – | |
| TMHMM | 210 | 232 | 23 | - | – | |
| Phobius | 214 | 236 | 23 | - | – | |
| Phobius | 237 | 241 | 5 | - | – | |
| Phobius | 242 | 267 | 26 | - | – | |
| TMHMM | 245 | 267 | 23 | - | – | |
| Phobius | 268 | 363 | 96 | - | – | |
| TMHMM | 364 | 386 | 23 | - | – | |
| Phobius | 364 | 385 | 22 | - | – | |
| Phobius | 386 | 396 | 11 | - | – | |
| Phobius | 397 | 419 | 23 | - | – | |
| TMHMM | 399 | 421 | 23 | - | – | |
| Phobius | 420 | 430 | 11 | - | – | |
| Phobius | 431 | 450 | 20 | - | – | |
| TMHMM | 431 | 453 | 23 | - | – | |
| Phobius | 451 | 455 | 5 | - | – | |
| Phobius | 456 | 478 | 23 | - | – | |
| TMHMM | 456 | 478 | 23 | - | – | |
| Phobius | 479 | 489 | 11 | - | – | |
| Phobius | 490 | 513 | 24 | - | – | |
| Phobius | 514 | 554 | 41 | - | – | |
| TMHMM | 553 | 575 | 23 | - | – | |
| Phobius | 555 | 577 | 23 | - | – | |
| Phobius | 578 | 593 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0338200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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