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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0338200 |
| Transcript ID | LotjaGi1g1v0338200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nodulin-like / Major Facilitator Superfamily protein; TAIR: AT5G14120.1 Major facilitator superfamily protein; Swiss-Prot: sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4; TrEMBL-Plants: tr|G7J3V8|G7J3V8_MEDTR Nodulin-like/MFS transporter; Found in the gene: LotjaGi1g1v0338200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:79864720..79867395) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTTTCACTGCAGGAGAAGTTGAAGACGTTTGTGAATCACAGATGGCTGGTGTTTGTGTGTGCCATGTGGGACATGTC ATTTGCAGGAACCTCGTACATGTTTGGGAGCATATCACCAGTGATAAAGAGCAGCATGGGTTTCAATCAGAAGCAGGTGG CTTTCTTGAGCGTGGCCAAGGATTTGGGTGACAACGTTGGGCTTCTGGCAGGGTTAATCAGCGAGCAATGGCCCCCTTGG CGAGTTATACTTGTTGGGGTTGTTCAGAATGTTGTTGGTTATGGCATCGTTTGGCTTGTTGTCACACACAGGTTCCCTTC TTTGCCTTTGTGGGCGGTGAGTAACTTCACTTCCATAGCCAAAAACTCTGTTAATTGTCACTTAATTTGAATGTTCTGTT TGCAGTTTTTAAGTACCATAATTTGTTGAATCACTACGGACGACTGGTGGTTGAGTTCAAGTGGTACATGTTTGATTCAA GTCGTCTCAGGTTCAGTTTTGTATATGTAGATAATTTTACAGATGCTTTGGATTTCGGTATCATTTAAGGACCCGTTTAG AAGAGTTTATTTGAAGTTTATTTTATAGTATAAGAGTTTATGCAAGTGTTTAAGAGAATTTTTGTAAATAGCTTATAATT TATCTGTAAGTTGTTTTGAACTCATTTTCATTAGTTGTTTAGAACATCTTATGAATAAGATTTTATCCATAACCTATTTT CAACTTATTTCCAAAAATTCCTCAAATTAACTTACGAATAAGCGCTTATGCGATAAATGTTTATTGCCATAAGCTCCCAA TTAAGCTGTTTACCTAAAGTCACCCTAAATGTGAAAATGAACCTAGTGACCCTCATTCACAAAGTTAAAGATGATATATA AAAAGCTAGAATCTTTCAGTTGAAGTTGAGATTTATGGTTGTTTTCATTTTCAACATGATTAGCTGTGTGTATGAGCTGT GATGTGCATTCTCACACTTTGAAGAAAATTCATTTCATTGCAGTAAAATTGGCTAACCAGGCATTGATTTGCAGCTATGC ATTTTCATATTTGTGGGACAAAATGGCTGTACCTATTACAACACAGCTGCTCTAGTTTCCTCCGTGCAAAGCTTCCCGGA AAGCAGAGGACCCGTGGTGGGGATATTGAAGGGCTTTGTTGGCTTAAGCGGTGCAATTTGGACTCAAATAATAGCTATGA TCAATCTCCCTGATCAGGCATCTCTGATTTTCATTATGGCAGTTGGACCCGCTATGGTTTCTTTCACCCTCATGTTCATC ATAAGACCAGTCCATAATTACCAACAATCTAGAGCTTCTGATAGTTCAGGCTTCATGTTTATCTACAGCATTTGCCTTCT CTTGGCTGCTTATCTGATGGGAGTTTTACTGCTACAGAATATGTTGGTTTTGGACCAAAGCATCATCACTTTATTTGCAG TTATTTTGATCATTTTCATATTGCTTCCAATTATTGTTCCCATTGTATTGGTTTTCTTCTCGGAACCGAAAAGTCCTGAC GAGGAAACCCTTCTCGAGCCACCAATCCCAACATCAAGTAAAACTATTCATGTGATTGCTGAGACTAGTAATGGTGCCAA ACATGTTGAAGAAGAGAAGCCTCCAAAGCTTGAGGTGCTTCCATTATCAGAAGGGCCAAGGGACATTGTTCAAGTTCATG CCAAACTTTTCCAAGCAGTCACTGCAGCTCTGAAGAAAATCAAACAAAAGAATGGCCCCCGTAGAGGAGAGGATTTCACC TTAACTCAGGCTTTTGCGAAGGCTGATTTTTGGATCATGTTCTTATCCCTCCTGTTGGGTTGTGGATCAGGCTTGACAAT GATAAACAACATGGGACAGATTTGTCAATCGTTGGGAGATCACAATGTCAATGTGTATGTATCTATTATTAGCATATCGA ACTTCCTCGGTCGTGTTGGTGGCGGCTTCTTCTCAGAGGTTATAGTAAGGTATAGTCACTACTCTTTTTGTTTTTCGTAT TTTTGCGCACGATGGAGCATAAAATTGACAATCAACCATGATTTCTGTCAAATAACACAGTTAGCGTTGCCACATCAGCA TTTCTTGCAACTTTCTTTCGTAACATATAGCATTGCTGTTTAAAAATTAATGTAAAAGTGCTCTTTTGTGCGATTTTTTT AACAGAAATTTTGCGTACCCGAGACTTGCTGCCTTAGCATTGGTTCAGGCACTGATGTCTTTTGGGCTTTGCTACTATGT CTTTGGCTTGGTTGGACAAGTTTATGTGGTGGCTATATCTATGGGTTTTGGGTATGGTGCCCACTGGTCAATTGCATTAG CTGCAACTTCAGAAGTGTTTGGATTGAAGAACTTTGGAACTTTGTACAACTTTCTTACCATGGCTAGCCCTGCTGGATCT CTGCTTATATCTGCATTGTCCAGCACAATCTATGACTATTATGCAGAGCAACAAGCAAAGCATCGAATTCATACCTATGG AGCCTTGAGGAACTTTGCCATGCCTTATAACAGTACTGGAAATAATGAATTGCTTCTTTGTGAGGGAAACATATGTTATT CCATTACATGTGGAATCTTAGCAGTAGTTTGCCTGTTTGCAGCTGCTTTGAGCTTGATCATAGTTCACCGGACTAAGAGG TTCTATGCTCAACTTTATGTGAAGTGTCAATCTTGA
CDS sequence (LotjaGi1g1v0338200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTCACTGCAGGAGAAGTTGAAGACGTTTGTGAATCACAGATGGCTGGTGTTTGTGTGTGCCATGTGGGACATGTC ATTTGCAGGAACCTCGTACATGTTTGGGAGCATATCACCAGTGATAAAGAGCAGCATGGGTTTCAATCAGAAGCAGGTGG CTTTCTTGAGCGTGGCCAAGGATTTGGGTGACAACGTTGGGCTTCTGGCAGGGTTAATCAGCGAGCAATGGCCCCCTTGG CGAGTTATACTTGTTGGGGTTGTTCAGAATGTTGTTGGTTATGGCATCGTTTGGCTTGTTGTCACACACAGGTTCCCTTC TTTGCCTTTGTGGGCGCTATGCATTTTCATATTTGTGGGACAAAATGGCTGTACCTATTACAACACAGCTGCTCTAGTTT CCTCCGTGCAAAGCTTCCCGGAAAGCAGAGGACCCGTGGTGGGGATATTGAAGGGCTTTGTTGGCTTAAGCGGTGCAATT TGGACTCAAATAATAGCTATGATCAATCTCCCTGATCAGGCATCTCTGATTTTCATTATGGCAGTTGGACCCGCTATGGT TTCTTTCACCCTCATGTTCATCATAAGACCAGTCCATAATTACCAACAATCTAGAGCTTCTGATAGTTCAGGCTTCATGT TTATCTACAGCATTTGCCTTCTCTTGGCTGCTTATCTGATGGGAGTTTTACTGCTACAGAATATGTTGGTTTTGGACCAA AGCATCATCACTTTATTTGCAGTTATTTTGATCATTTTCATATTGCTTCCAATTATTGTTCCCATTGTATTGGTTTTCTT CTCGGAACCGAAAAGTCCTGACGAGGAAACCCTTCTCGAGCCACCAATCCCAACATCAAGTAAAACTATTCATGTGATTG CTGAGACTAGTAATGGTGCCAAACATGTTGAAGAAGAGAAAAAATCAAACAAAAGAATGGCCCCCGTAGAGGAGAGGATT TCACCTTAA
Protein sequence (LotjaGi1g1v0338200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSLQEKLKTFVNHRWLVFVCAMWDMSFAGTSYMFGSISPVIKSSMGFNQKQVAFLSVAKDLGDNVGLLAGLISEQWPPW RVILVGVVQNVVGYGIVWLVVTHRFPSLPLWALCIFIFVGQNGCTYYNTAALVSSVQSFPESRGPVVGILKGFVGLSGAI WTQIIAMINLPDQASLIFIMAVGPAMVSFTLMFIIRPVHNYQQSRASDSSGFMFIYSICLLLAAYLMGVLLLQNMLVLDQ SIITLFAVILIIFILLPIIVPIVLVFFSEPKSPDEETLLEPPIPTSSKTIHVIAETSNGAKHVEEEKKSNKRMAPVEERI SP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 15 | 15 | - | – | |
| PANTHER | 2 | 319 | 318 | 8.9E-159 | – | |
| PANTHER | 2 | 319 | 318 | 8.9E-159 | – | |
| Gene3D | 5 | 203 | 199 | 2.1E-7 | – | |
| SUPERFAMILY | 10 | 197 | 188 | 3.53E-11 | ||
| CDD | 14 | 231 | 218 | 1.49599E-72 | – | |
| Pfam | 15 | 262 | 248 | 3.1E-87 | ||
| TMHMM | 16 | 38 | 23 | - | – | |
| Phobius | 16 | 36 | 21 | - | – | |
| Phobius | 37 | 81 | 45 | - | – | |
| TMHMM | 79 | 101 | 23 | - | – | |
| Phobius | 82 | 102 | 21 | - | – | |
| Phobius | 103 | 107 | 5 | - | – | |
| Phobius | 108 | 127 | 20 | - | – | |
| TMHMM | 108 | 130 | 23 | - | – | |
| Phobius | 128 | 147 | 20 | - | – | |
| TMHMM | 145 | 167 | 23 | - | – | |
| Phobius | 148 | 168 | 21 | - | – | |
| Phobius | 169 | 173 | 5 | - | – | |
| Phobius | 174 | 194 | 21 | - | – | |
| TMHMM | 174 | 195 | 22 | - | – | |
| Phobius | 195 | 213 | 19 | - | – | |
| TMHMM | 210 | 232 | 23 | - | – | |
| Phobius | 214 | 236 | 23 | - | – | |
| Phobius | 237 | 241 | 5 | - | – | |
| Phobius | 242 | 267 | 26 | - | – | |
| TMHMM | 245 | 267 | 23 | - | – | |
| Phobius | 268 | 322 | 55 | - | – | |
| MobiDBLite | 297 | 322 | 26 | - | – | |
| MobiDBLite | 298 | 322 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0338200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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