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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0341300 |
| Transcript ID | LotjaGi1g1v0341300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ENTH/ANTH/VHS superfamily protein; TAIR: AT4G40080.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q8L936|CAP16_ARATH Putative clathrin assembly protein At4g40080; TrEMBL-Plants: tr|A0A0L9UG74|A0A0L9UG74_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0341300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:80338552..80340166) extracted from Lotus japonicus Gifu genome v1.2.
ACCAAATCCAAATCACTCAGTCTTAATTCATAATAACCCGCGCTATCATTATCCAAAAATTCACTTTCCTTTTAATTTCT TCATGTCACTATTCAACACACAAACCACACGTGTTCGAATACGAGTAATCTTTGGTTTCTAACTCAGTTTCATTCCACAC ATAAATACATAGAATCCAAAAACAGAGCAAAACAAAACAGAGCACCCTATATATTCCCTTCAACTCCTCGCATTCCTCTC CATCACACACACACTCTTCTTCTTCTTCATCTTCTTCCTCCTTCCCACCATGACCAGGTTCAAGATCCTCGCCGACAATC TCAAAGACAAAGCCTCAGTTCTCGCCGCAGCACTCTCAATCAAGCGCCAAGTATCCTCCGTCAAGGTCCGCGTCCTCCGC GCCACCACCCACAACCTCTCCGCCCCTCCCTCGGAAGACACAATCGCTGCCGTTCTCGCCGCCGGCAGAGGCTCCTACCT TCTCCCCCGCGCCTGCATCGACGCCCTCATGGACCGCCTCCACCGCACCCGCAGCGCCGCGGTTGCCCTCAAATGCCTCT TCACGCTTCACAACGTCGTCGTCAAAGGGTCGTTCGCGCTCAAGGACACGCTCTCCTGCTACCCTTCCTACGGCGGCCGG AACTTCCTCAACCTCTCGGATTTCCGCGATGATACCGACTTCGAATCGATTGAACTCAGCTCCTGGGTTCGGTGGTACGC GAGTGTCGTAGAACAGAGCTTAACCGTTTCTAGAGTCATGGGGTATTACCTTACCGCTTCAAATTCTTCAATGGACAAAA AGAAAGATACCCAAGAATTGGAATCTTTGGTTTTGAAGATGTCAAACGCTGATTTGTTGTACAAGTTGGAAAATCTGGTG GTTTTCGTTGAACAAATTGGTCGTGTTCCTGAGTCATTGCACCTTCAGAGGAACGAGTTGGTCTACGAAGTTGTGAGATT GGTGGGGGAAGATTACAGAAGCGTGCAGGGTGAGATTTTGTGGCGGTTGGAGGAGCTTGAGAATCGGGTTACAGAGGACA TGGATGTGGGTGAGTTGAGCGAGTTGGTGGGTTATTTGAATCGGTTGGAAGAAACGCAAGAAAGATTGGTGCTGTTGTTT GTGAACAGAAGAAGGAATAATGGGTTGTGGGATTTGATCAAGAAGACGAAGGTGAAGGCGTTGGAGAAGAAGGAGGAGAC GGAGGGGAAGTGGCTCACGGTGGTGGTGTCCAAGAATGCGGCCAGCGCCGCCGCCGCCGAGTTGACTCGGTCTACGAACC CGTTTCTTGAACCGGGTCAAGTGTGTCCGGTTCTGCCGTTGGGTTTTGCAACGGTTAGATGACAGGTGGCAACGGTCACG TTATGTAGAAATTCACCAAAGTTGATTTTTTCCTTTTTTAATCATTTTTTCTTCCTCACTTTTGAGGAATATACACTTTT TTGTTGTATTTTTTGATTTTTTCATGGTCTCTTTTGGAGTGAGAGGGGTTCTTTGTTGTCTGCTGTTGTTGCAATTTGTG CATAATTAAAGTGCAAACCTAGATAGATTGACAGATAATAATCATGTACATCAAAATAATAAAAGAAATTTCAATGAGTG TTTTGACATTTGAAC
CDS sequence (LotjaGi1g1v0341300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCAGGTTCAAGATCCTCGCCGACAATCTCAAAGACAAAGCCTCAGTTCTCGCCGCAGCACTCTCAATCAAGCGCCA AGTATCCTCCGTCAAGGTCCGCGTCCTCCGCGCCACCACCCACAACCTCTCCGCCCCTCCCTCGGAAGACACAATCGCTG CCGTTCTCGCCGCCGGCAGAGGCTCCTACCTTCTCCCCCGCGCCTGCATCGACGCCCTCATGGACCGCCTCCACCGCACC CGCAGCGCCGCGGTTGCCCTCAAATGCCTCTTCACGCTTCACAACGTCGTCGTCAAAGGGTCGTTCGCGCTCAAGGACAC GCTCTCCTGCTACCCTTCCTACGGCGGCCGGAACTTCCTCAACCTCTCGGATTTCCGCGATGATACCGACTTCGAATCGA TTGAACTCAGCTCCTGGGTTCGGTGGTACGCGAGTGTCGTAGAACAGAGCTTAACCGTTTCTAGAGTCATGGGGTATTAC CTTACCGCTTCAAATTCTTCAATGGACAAAAAGAAAGATACCCAAGAATTGGAATCTTTGGTTTTGAAGATGTCAAACGC TGATTTGTTGTACAAGTTGGAAAATCTGGTGGTTTTCGTTGAACAAATTGGTCGTGTTCCTGAGTCATTGCACCTTCAGA GGAACGAGTTGGTCTACGAAGTTGTGAGATTGGTGGGGGAAGATTACAGAAGCGTGCAGGGTGAGATTTTGTGGCGGTTG GAGGAGCTTGAGAATCGGGTTACAGAGGACATGGATGTGGGTGAGTTGAGCGAGTTGGTGGGTTATTTGAATCGGTTGGA AGAAACGCAAGAAAGATTGGTGCTGTTGTTTGTGAACAGAAGAAGGAATAATGGGTTGTGGGATTTGATCAAGAAGACGA AGGTGAAGGCGTTGGAGAAGAAGGAGGAGACGGAGGGGAAGTGGCTCACGGTGGTGGTGTCCAAGAATGCGGCCAGCGCC GCCGCCGCCGAGTTGACTCGGTCTACGAACCCGTTTCTTGAACCGGGTCAAGTGTGTCCGGTTCTGCCGTTGGGTTTTGC AACGGTTAGATGA
Protein sequence (LotjaGi1g1v0341300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTRFKILADNLKDKASVLAAALSIKRQVSSVKVRVLRATTHNLSAPPSEDTIAAVLAAGRGSYLLPRACIDALMDRLHRT RSAAVALKCLFTLHNVVVKGSFALKDTLSCYPSYGGRNFLNLSDFRDDTDFESIELSSWVRWYASVVEQSLTVSRVMGYY LTASNSSMDKKKDTQELESLVLKMSNADLLYKLENLVVFVEQIGRVPESLHLQRNELVYEVVRLVGEDYRSVQGEILWRL EELENRVTEDMDVGELSELVGYLNRLEETQERLVLLFVNRRRNNGLWDLIKKTKVKALEKKEETEGKWLTVVVSKNAASA AAAELTRSTNPFLEPGQVCPVLPLGFATVR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 160 | 159 | 1.3E-25 | ||
| PANTHER | 3 | 339 | 337 | 1.1E-145 | – | |
| PANTHER | 3 | 339 | 337 | 1.1E-145 | – | |
| ProSiteProfiles | 23 | 161 | 139 | 12.128 | ||
| SMART | 29 | 161 | 133 | 0.0031 | ||
| SUPERFAMILY | 31 | 158 | 128 | 4.19E-17 | ||
| CDD | 32 | 154 | 123 | 1.31808E-45 | – | |
| Pfam | 32 | 275 | 244 | 2.0E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phospholipid binding | Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester. |
Expression pattern of LotjaGi1g1v0341300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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