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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0342300 |
| Transcript ID | LotjaGi1g1v0342300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Bet1-like protein family; TAIR: AT4G14600.1 Target SNARE coiled-coil domain protein; Swiss-Prot: sp|Q8VXX9|BETL1_ARATH Bet1-like protein At4g14600; TrEMBL-Plants: tr|A0A072V1K5|A0A072V1K5_MEDTR Target SNARE coiled-coil protein; Found in the gene: LotjaGi1g1v0342300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:80452704..80455274) extracted from Lotus japonicus Gifu genome v1.2.
GCAATATAGTGATGTAGCCTTACAATTAGGATGAAAATGCCAAAATGGTGATTCCTTGTCTAAATCTAAATTAATCTAGA AAACAAAATAAAATAAGCTAACAGGTTTTTTCATTCACGAAATCAATCACTTTGCATTATGAGGAATTGAGATTTCTCCA TCAAATCCAATTCAAGGGTTTCTATCTTCTCCTTCAATCTCAATGTCGTTCAATTCGCACAGAGGACCCTCTTCCTACGG CGACGCTGCCCCTTTCCGATCAAGGTAACCTTCTTCAATTCCTGCAATTCCCTTGTTCTCGTTCTCAATTACAGAGTTTC CATCAATTGAAATTGGGATAACTGATTATGCTATGTTCCAATTGCAGAGAAGGGCTTAGCACGAGAGCAGGTGCTGCCTC CGATGAAATTCAATTGCGTATTGATCCCGTCGGGGACATGGACGATGAAATCACCGGTCTTCGTGGCCAAGTTCGAAAAT TGAGAAATGTATATCTTCTTCTTCCCCCATTTTCCCTCTTTTTTCTTTCAATCTCAGAAGGGGTTGAATTAAGTTTGAAT CACACGAAAACTATGAAAAATTGTTCCTTTTTACCTCGGTGATTTCTAAGGTGTTGCTGCATGGACAACTGGTGCCTGTG GTTTAACCAGGGTTGTTAATGGCGTATAGCGTAGCGTAGGGCAAGCCCAAAAAATGCTATTTTGAGCGCTATTGCGGCGC TATAGCGGTGAATAGTGGAGTAGCGGTGAACCCCAGGGCGCTACGCCATAGTGCTATTGCGCCGCTATGGCCCTCTATTA ACAAGTCTGGGTTTAACTCAAATACTTGAAACTCAGAAAAAAGAATCATTTTTGAGGTTGCAGTATATGGAAGAAGTGAA GGACTATGTTTATATTATATTATATTACTGGTCCAAAAAATGAGGGTAAAATGAAAATTAACTTAATGAATCATGTACAT GATTGTTCACTTTTTTCATTAAACAATGTATTGATCCTTATAGAATAGTGGATACAGCATTTGATATTTGATTTTTAGAT GCCTGATTCTGATGATGATGGAACATTGAGTTAAATTTCGAACCTGGTTAGAGTCTTGGCAGCTTGACTTATTGTTGAAT TATATGATGCTAAGTACTTTCTTTCTTAGAACTAGTTTGATGAAACTATGTCATGTCCCCCTCTCCCCCTGCGCTTTCCT TTCTGCTTCATAATATTCTCATACAATTTCACGTGTTTCTGATGCAGGTTGCCGAGGAGATAGGTACAGAAGTGAAGTCT CACAGAGATTTTCTGGAAGTGATGGTACATCATTTCTTGGATAACCTGTATTTCATTGTTATTGTTATTTTTTCAACTTT TAGCTTGAAGAAGAAGTGTATTGTGCCTAGACTTGCCTGCTAATCTGCTTTATGATCCAGGCATAATGGAATTACTATTG AAATTTTATGTTCAGTTCTTGAAAGCTGAATGCTAACCTTGGCAGGAAATGTTTCTCAGTAGGTTCGATTTCTTATAATG TTAAGGATCTCAAAACTTGTTAAAATTGAAAACCATGTCGTTAATGTTGCTACTATAATTTGAACATTTGACTTCAAATA TATTTGCTGCTATAGGATGTTTAGCAATTAGCAATTTAGCATGGTAAATAATACTTTATGATTTTGCTTTTAAAGATGAA TTGAATTGATGAGAACTTTGGCCAATGTTTTACGGCTTTCATACTAGTGAGATTTACTACTGCACATTAAGAGTACAGGA AAAATGTTTTCGCTGGTTTTTGTTGAATTTTCATTTATAGTAAATTGATCAGTCACTGGTACGTTGTTTCCTTTTCAACA AGAAAAATGTCCAACTGTCTTGTTAATATTTTGATTTTATCTGTTTCTATACAGCAAATGACAATGATAAAGGCTCAAGC TGGGGTGAAGAATAACTTAAGAAGATTGAACAAGAGCATCGTCCAAAATGGTTCAAACCATATTGTTCATGTGGTTGTTT TTGCACTAATCTGTTTCTCCATAGTGTACTTTTGGTCAAAGATTTCCAGAAAATGAGGATCCGTAGGGGCTTACTTCTCC AGCCTCATAGTTGAAAGACTTGAGTCCATCGAAAGCCTCATTTTGTTGCATAGAAAAGCTTTGTAGTTTAATTTGGAGTT TTGTTTCCTGGTTGAAGCAAGGTGTGAAAAAAAGGATAATTTCTTGTGTAATAGTAGAAGTTTGCAAAATCGTATGACTC TTTAAAATATCTGAGAAATGTAGTAGCAAGTGGCATCCTTGAACTTTTTCACTCAATGGCATTGTACTATTTTTAACTTT TTTGTGTCAATTCATTGCACTAGCCACTAGGTGAAATTATCTGTTTAGTTGTCATGTAAATTGTGTCTGCGAAAGAGGAA TTAAGAATCTTAGACAGTTAAACAATTCCATGGGATGGTGGCCGGATGTTCATAACTCTGGCTTGTGAAGGACACCATCT TGGTCTTGACTAATTCATTGGAAGAGTACTCCCTCGTTAATCTTATAAGTGGGGTAAACCTGCTTTTACGGGCGAAAGAA ATATGAAATCC
CDS sequence (LotjaGi1g1v0342300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTTCAATTCGCACAGAGGACCCTCTTCCTACGGCGACGCTGCCCCTTTCCGATCAAGAGAAGGGCTTAGCACGAG AGCAGGTGCTGCCTCCGATGAAATTCAATTGCGTATTGATCCCGTCGGGGACATGGACGATGAAATCACCGGTCTTCGTG GCCAAGTTCGAAAATTGAGAAATGTTGCCGAGGAGATAGGTACAGAAGTGAAGTCTCACAGAGATTTTCTGGAAGTGATG CAAATGACAATGATAAAGGCTCAAGCTGGGGTGAAGAATAACTTAAGAAGATTGAACAAGAGCATCGTCCAAAATGGTTC AAACCATATTGTTCATGTGGTTGTTTTTGCACTAATCTGTTTCTCCATAGTGTACTTTTGGTCAAAGATTTCCAGAAAAT GA
Protein sequence (LotjaGi1g1v0342300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFNSHRGPSSYGDAAPFRSREGLSTRAGAASDEIQLRIDPVGDMDDEITGLRGQVRKLRNVAEEIGTEVKSHRDFLEVM QMTMIKAQAGVKNNLRRLNKSIVQNGSNHIVHVVVFALICFSIVYFWSKISRK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 108 | 108 | - | – | |
| PANTHER | 5 | 131 | 127 | 9.0E-70 | – | |
| PANTHER | 5 | 131 | 127 | 9.0E-70 | ||
| SUPERFAMILY | 43 | 100 | 58 | 7.85E-8 | – | |
| CDD | 44 | 100 | 57 | 1.57092E-10 | – | |
| Gene3D | 46 | 108 | 63 | 3.5E-7 | – | |
| TMHMM | 106 | 128 | 23 | - | – | |
| Phobius | 109 | 127 | 19 | - | – | |
| Phobius | 128 | 133 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Integral component of Golgi membrane | The component of the Golgi membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0342300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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