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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0342900 |
| Transcript ID | LotjaGi1g1v0342900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein, putative; TAIR: AT4G14096.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q94B46|FBL74_ARATH F-box/LRR-repeat protein At4g14096; TrEMBL-Plants: tr|A0A072UNA8|A0A072UNA8_MEDTR F-box/RNI superfamily protein; Found in the gene: LotjaGi1g1v0342900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:80534070..80535999) extracted from Lotus japonicus Gifu genome v1.2.
GGGAGTTTTACTTTAAAAAAATAGAAAAGCATTACTATAATGATCAACAACATACATGGAACTGCACTGTTCTCTACAAA CCGGACCTCATTCTTCACCCTGATTTTGAGCAATATTCTTGCGAGATTGATCCTCATTCTTTCCTATCAATTCGAATATT TCCCATAATAGCACTCTCATTTATGAACAATAATAACTGAATTATATAACCCTGTCAATATTTTCCAATATTTCATGTTG ACCAAACTAAAGCATCAAATTTGTTACCCTAGGCAATTCCTGACTTCAAAAAAAACCTAGACAATTTCTTAACAGGAGGC GTCACCATAGCTGCCCAATGCTGCCGAATGTCTAATTCAACCGATGAGATGCTGATTTCGCCGAAGGCGAAGAGAGGAAG ACACAACAAGAGTGAAAATGAAGATAGACTCAGCAATTTACCTGATTGCATTCTCCTTCACCTTTTATCATTTCTTAAAG TCAAATACGCAGTTCAAACATGCGTGTTATCCACAAGATGGAAGGATCTCTGGAAACGTCTTCATAACCTTATCTTACTC TCCTCAGACTTTTCCAGTTTGCGGAGTTTCACCAAATTTATGTCTAGGCTTTTGACTCTTCGCGACGGCTCGATCGCGCT GCAGAACCTAGATTTCGAGCGTGAGGGTTTCGTGGAGCCTCATCTTCTCAAAAGGATCATGAAATACGCTGTTTCACACA ATATCCAGCAATTAAGATTGTCTGTCAGGTGTGATATTAAACACTTTCCGCACTGCATCATTTCATCTAAGACCTTGACA TCTCTTAAGCTCGCAATTCATCCTAAAGTTAAAAGCCCTTGTTATAAGAAACAAACCTTATTTCCAAAATCTCTTTATAA TTTGCCAGCATTAACGAGCTTGCATCTAGTGAATTTTGCCTTTTGGGAAAATCACCATGGCATTGCCGAGCCTTTTTCGG CCTTTATCAAGTTGAATAGTTTGATCATTGAGAATTGTAGCCTCAGTGAGGCACATTGTACACTCTCCATATCAAGTAGG ACTCTATGCCATTTAACTGTGTTTAACCAATATCGGCTCTTGCACAAAACTGAGCTATCTTCTCCAAGCCTTCGTACATT TGCCTTTGAAGGTACTCCTTATCAGAAACTCACGGGAAGCAATCTTTCATCCCTTGAACAAGTGCATATTAATGTAGCAA ATTGGTCTCTTGAACAAGAAGATAGAGAGATGTTAATGTGGGCAAATTACCCGCAACCTCCTTTCATTCTACTCAGCTGG CTGCTAAAACTTCCCAATATAAAATTATTGACATTCTCGGCATGTACTCTTCAGGTACCTTCACATTTGCATTTTTTATT CTTAAGATGCTTCTTTCATTCTAAAATTCTGTTAATATTCAATTGATCAACTTGCATTATATCAATTGATCCTAACTAAT CCCCGTCCCTCATTTCTTAGGCTCTCTTCTTATTTCGTTATACATTGAAGCTTAAGGCTGCTATCTTGAGTGACATGAGC CTTGAACTCATTGAAAATAAAACAGGAACAGATTTCATTTGGATTTCAAAGAGCAGAATCGGTACCAGGTCCAGATGGAA TAGTAAACTTTCTGCTTCAAAACTCTACAAAGGTTGACATCATAAGGTGCCCAGGATGATAATAAATGCATTAAACTTTT ATGGAGAGATGGATAGTTACTGGGAATGAAACGAAGTTATTGGTGGTTAGTGGAAATATCTTTATTTTGTGGCCTATATG GTTGATGAGAAGAAAGGAAGAAGTAATTCTTAGGCACTTATGTTCTGTCATGATATTTGTGAATTTTGGATCTCATATTT ATATATTCAAGTTTATATTAGCATTTGTTTTGCTATTGAACAAATCATGTTCAGTTGGGATGATATACTAATAAAGTTTT GCTTCAATCA
CDS sequence (LotjaGi1g1v0342900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAATTCAACCGATGAGATGCTGATTTCGCCGAAGGCGAAGAGAGGAAGACACAACAAGAGTGAAAATGAAGATAG ACTCAGCAATTTACCTGATTGCATTCTCCTTCACCTTTTATCATTTCTTAAAGTCAAATACGCAGTTCAAACATGCGTGT TATCCACAAGATGGAAGGATCTCTGGAAACGTCTTCATAACCTTATCTTACTCTCCTCAGACTTTTCCAGTTTGCGGAGT TTCACCAAATTTATGTCTAGGCTTTTGACTCTTCGCGACGGCTCGATCGCGCTGCAGAACCTAGATTTCGAGCGTGAGGG TTTCGTGGAGCCTCATCTTCTCAAAAGGATCATGAAATACGCTGTTTCACACAATATCCAGCAATTAAGATTGTCTGTCA GGTGTGATATTAAACACTTTCCGCACTGCATCATTTCATCTAAGACCTTGACATCTCTTAAGCTCGCAATTCATCCTAAA GTTAAAAGCCCTTGTTATAAGAAACAAACCTTATTTCCAAAATCTCTTTATAATTTGCCAGCATTAACGAGCTTGCATCT AGTGAATTTTGCCTTTTGGGAAAATCACCATGGCATTGCCGAGCCTTTTTCGGCCTTTATCAAGTTGAATAGTTTGATCA TTGAGAATTGTAGCCTCAGTGAGGCACATTGTACACTCTCCATATCAAGTAGGACTCTATGCCATTTAACTGTGTTTAAC CAATATCGGCTCTTGCACAAAACTGAGCTATCTTCTCCAAGCCTTCGTACATTTGCCTTTGAAGGTACTCCTTATCAGAA ACTCACGGGAAGCAATCTTTCATCCCTTGAACAAGTGCATATTAATGTAGCAAATTGGTCTCTTGAACAAGAAGATAGAG AGATGTTAATGTGGGCAAATTACCCGCAACCTCCTTTCATTCTACTCAGCTGGCTGCTAAAACTTCCCAATATAAAATTA TTGACATTCTCGGCATGTACTCTTCAGGCTCTCTTCTTATTTCGTTATACATTGAAGCTTAAGGCTGCTATCTTGAGTGA CATGAGCCTTGAACTCATTGAAAATAAAACAGGAACAGATTTCATTTGGATTTCAAAGAGCAGAATCGGTACCAGGTCCA GATGGAATAGTAAACTTTCTGCTTCAAAACTCTACAAAGGTTGA
Protein sequence (LotjaGi1g1v0342900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNSTDEMLISPKAKRGRHNKSENEDRLSNLPDCILLHLLSFLKVKYAVQTCVLSTRWKDLWKRLHNLILLSSDFSSLRS FTKFMSRLLTLRDGSIALQNLDFEREGFVEPHLLKRIMKYAVSHNIQQLRLSVRCDIKHFPHCIISSKTLTSLKLAIHPK VKSPCYKKQTLFPKSLYNLPALTSLHLVNFAFWENHHGIAEPFSAFIKLNSLIIENCSLSEAHCTLSISSRTLCHLTVFN QYRLLHKTELSSPSLRTFAFEGTPYQKLTGSNLSSLEQVHINVANWSLEQEDREMLMWANYPQPPFILLSWLLKLPNIKL LTFSACTLQALFLFRYTLKLKAAILSDMSLELIENKTGTDFIWISKSRIGTRSRWNSKLSASKLYKG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 319 | 319 | - | – | |
| MobiDBLite | 1 | 26 | 26 | - | – | |
| MobiDBLite | 11 | 26 | 16 | - | – | |
| SUPERFAMILY | 15 | 70 | 56 | 1.57E-9 | ||
| Gene3D | 22 | 369 | 348 | 8.2E-15 | ||
| PANTHER | 23 | 341 | 319 | 1.2E-72 | – | |
| PANTHER | 23 | 341 | 319 | 1.2E-72 | – | |
| Pfam | 27 | 66 | 40 | 9.4E-5 | ||
| SUPERFAMILY | 63 | 332 | 270 | 2.51E-6 | – | |
| Phobius | 320 | 338 | 19 | - | – | |
| Phobius | 339 | 387 | 49 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0342900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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