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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0345300 |
| Transcript ID | LotjaGi1g1v0345300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Double-stranded RNA-binding protein 3; TAIR: AT1G09700.1 dsRNA-binding domain-like superfamily protein; Swiss-Prot: sp|O04492|DRB1_ARATH Double-stranded RNA-binding protein 1; TrEMBL-Plants: tr|I1K9R9|I1K9R9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0345300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:81210541..81214230) extracted from Lotus japonicus Gifu genome v1.2.
GATAGCTTAATATTGGAGTGGTTAGCGTTGAGGAGAGAAGTAAGTGAATCTATCATTGCTGCTTGTTCATGTATGAGTTT GTGCATAAACCGTTGGATCAAGCCCAACTCAAAATCAAACATGAAAGTCATCACATGAACGGCTATGATTGATGATCATT CATTATTCCAGCATTGGCATTATATACCACTCTCTCTCTTCTCCTTCCTCATTTGTTCACTCACATCACAGGTAGGTTTA TGTCGTGAACCACAAACCCCAACACACTCACACACACACACACACACACACGAAGGAGCTATGGCGGCCACTAACGAAGA TTTCAAAGGTATTTTTCTTCTTTAATTTTTCCTTTTTTTTCTAGTTTCTACTAAATTGAACTATTCGAGTTCAAAATTCT ATATAGCAATTCCTTGCACTTGTTAAGTGATTGGTTTTTCTCTTTTTTTTTTTTATTGTTCGATTTGAGTATATTTTTCT CTGTATGAATGCATCGCTTTTGGGTGTTTGGAAGCTGAAAAAATAGCTCTTTTTTTCAATCAGAGCCTTTGTTGACTGTT GAGGTTCCAAAGATGTTTTTTTTTGTCTATCCTGAATGAAAAAAAAATTGATCTTTGACATGGTTTTAGGGGTTGTCCTT GACCTGGGTTTAGGTTGTTTGGGATGAGGTGTTTAGAGGAAGGGGAGGCACTTTTTTTTCCTCTAATTTTTAATAAATAG TTTTTGATTTGATTATTGTTTTGAAAATGGAAGTTAGGAAATTAATAAGTTAGCATGAACCATATCCTAACCAGTAACCA CCGAACGCGGTGGTAAAAATTGGCTGTTTGATCCCCTAGGCCCTAGGTGAGTGTTTGATACTTATAAGCGGCACTCTTTG ACCTTCACCACATCCGAGTTGGAATTGCAAGAATAATTTAATACGCCAAAAACCATATACCAACCATTTATTTTAGTATA TTAAATTTTTAATTTTAAATTATTAAATAAAATAAAAAACATGTCCTCCCCTCCCTCGCAAACAACTTCAGTGTCATTGC ATTTTCATGGAGGAATAGAATTTTTGGATGAGGGAGTGAGGAAATAAAAAAAAGAATGTAACTTGAAGAGAGATGTATTT TACAAGGAAAAAAGAAACTTTTATAGGGCAGTTGTCAGTTTGAATTCCTTTTCGTAACACTGGTTAGAAGTTAAATGAAA TAGATTAAGGCTGAAGGTAAAGGTAGGTTAGACTAGCTTAGACAGGCTTATTTGTAATGCTGCTAAGATAGTTTTTGATG TTGATTTGTGCTGGTTATTGATGTACTTTTTTATATGTGGTCAGGTGTCTCGAATTGTTATGTGTTCAAGAGCCGATTGC AGGAGTATGCTCAGAAAGTGGGGCTCACCACACCTGTCTATGAAACAATCAAGGAAGGGCCTTCCCATGAGCCTTATTTC AGGTCAACTGTGATAGTAAACAATGTTCGGTATGATTCTTTGCCTGGATTTTTCAACCGTAAAGCAGCAGAGCAGTCTGC TGCTGAAGTTGCTCTGGTGGAGTTGGCCAAATCTGCTGAAGCTAATCAACCCGTCAGTCAACCTGTTGTAAGTAGTGTTT ACCGCTTGCGAATTATACTTTTGTGTCAGCAGTAATTGCAATGTCTGCAAGTAGTCAAATAGTTTTGCGTTGGTTTAAGC TCTTTGGGATGTCTGAAGTTTTTATTTTGTGGTACTAATTCCTGACTTTTCTCCTTTCACGAACGTTTATTTGATTTTTT TTTAAAACTTACGATTAGATTCTGATTCAACCACAGTGTGGAAGTGTTACATATAACATGTAATACTACGCAAAGAACAT AGAATAGGAAAATATTTCATGGAAGTTTTACACATTTACAGTGTGAAAGTTTTATCCTATCTTCTAAAAATAAGAAGGTA GCAATATCAGTTGGGGGGGGGGGGGGACTAGGATGCAGTTGGCTTGAGAAAAGAACATTGACATTTTTTCCCTAGCTAGT TCTCAAAGCAGCATGTGGTCAATAACTGAAGAAAAAGAATTTCAAACGAAGCAAGCAAAGAGCAAGTTATTAACCTGTTG AGTACCCTCCAAATATTTCTTTTGAACTTCACTAACACCGACAAAATCTGACACAACATGTGCTCCCCACTTTCAAAGGC TAGTTAACTAGTTTAGTAAACCAATATACCAGTACCTGCAATTTGGATACAAAGGCTAGTTTATTTTACCATCCATGATT GTTGCCACACACCACCACTCTGCTGTCCCTTTTGATGATTAGCAGAAATATAGTTGTTGCATATTTTATCCAAAGTTACC AATTGTATTGTCTCTAGACATACAAGTCTTTTATGTTCTGCATTCTAGTTTGTCTCAGACCTATTAGTTGTTTAATATTT GCTGCCTCTGATCATGTTAGTGATGTTTCTTCCAGCATGAAACTGGATTATGCAAGAATTTACTTCAGGAATATGCACAG AAGATGAGTTATGCAATGCCTTTGTATAACTGCAAAAAGGAAGAGACGCCAGGTCGGGCAGCTGGATATTCATGTACTAT TGACATTGGGGGGATTCTCTATATTGGGGGAACAGCAAAAACGAAGAGGGAAGCAGAGTTAAAAGCAGCTAGAACTGCTC TGTTAGCTATCCAGTCAAGTCCATCTCATGCTACTGAAAACCAGTTGACAGTCATTCCTTGCAGAAAAAGGGCAACAACT GTTCCCTTGCCTGATAAGACTTCAAAAACCCCCAAGCCAAAGAAAGAACGGTTTAAAAGGAAATCTGCCAAGAGGAAACA GTATAGAGATAAGAAGGGCCGCATTCGTGCTGAAAATGTGGGTAGTGGAGCAGAAATCAACCATCAGGTAGAAGCACATG CAAGTGTTAATGATGAACCTGGCATCCAGCAAATGAATTCTGAAGCATTCACATCAGAAGTAATGAAGGATTCTGAGATT GGAATGTCAGTTAATTATCATGAGAAAGAGACATTTGCTGGGGAGGGTGCTATTGCTCTTAATGGCCAAGAGACATTTGA AAATGGGAAGTCACAAGAAATGCATTGCAAAGAGAACAATCATGAGACTGTTGCTATTGAACAGTCTTCAGTGCCTAATG CAGGAATCCTAGAAAGGTGCACACTCATGGAGATGAACAAACAGCAATATGATGGAGAAATGATGCCAGACAATAAACTG TAATGTGGGGGATTTGAGATTAACATATATTTATTAGAGTTAGGAAACCTTTAGGATTCCAACATTTTTGCTTTGTTGGG TGTCACAAGAAAGTAGCATATAGGCTGTGACATGATTCACAGGAAGTTGATAAATTTTATGACTGAACTAATTATGGAGT TTCAGACCCATTGTTTTTTTGTATGGTATTATAATTATAATATGTAATTTATTCGCTCCATTTGTCCGCAACATGGGACG TGGGATTTGGATCATTGGATGTATTTTTTTGAAACTTTGGATCATTGGATGCGCATTTAAGATGATGTTTGGGGGTGTCA ACGTTTAATATTTTTTTTTTGGTTACATCAGGAAAGAAAAAACAAACAGGAAAAAACTGCAACATTAAATCACTGCATAA CAGTGGAACCACCAGGGATGGGGGAAAACTCCAGACCTTCCAATCCCATCCTTCCTGAATAGCAAGATTTGCCAGCGCAT CCGCAACAGC
CDS sequence (LotjaGi1g1v0345300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTGATGATCATTCATTATTCCAGCATTGGCATTATATACCACTCTCTCTCTTCTCCTTCCTCATTTGTTCACTCAC ATCACAGGTAGGTTTATGTCGTGAACCACAAACCCCAACACACTCACACACACACACACACACACACGAAGGAGCTATGG CGGCCACTAACGAAGATTTCAAAGGTGTCTCGAATTGTTATGTGTTCAAGAGCCGATTGCAGGAGTATGCTCAGAAAGTG GGGCTCACCACACCTGTCTATGAAACAATCAAGGAAGGGCCTTCCCATGAGCCTTATTTCAGGTCAACTGTGATAGTAAA CAATGTTCGGTATGATTCTTTGCCTGGATTTTTCAACCGTAAAGCAGCAGAGCAGTCTGCTGCTGAAGTTGCTCTGGTGG AGTTGGCCAAATCTGCTGAAGCTAATCAACCCGTCAGTCAACCTGTTCATGAAACTGGATTATGCAAGAATTTACTTCAG GAATATGCACAGAAGATGAGTTATGCAATGCCTTTGTATAACTGCAAAAAGGAAGAGACGCCAGGTCGGGCAGCTGGATA TTCATGTACTATTGACATTGGGGGGATTCTCTATATTGGGGGAACAGCAAAAACGAAGAGGGAAGCAGAGTTAAAAGCAG CTAGAACTGCTCTGTTAGCTATCCAGTCAAGTCCATCTCATGCTACTGAAAACCAGTTGACAGTCATTCCTTGCAGAAAA AGGGCAACAACTGTTCCCTTGCCTGATAAGACTTCAAAAACCCCCAAGCCAAAGAAAGAACGGTTTAAAAGGAAATCTGC CAAGAGGAAACAGTATAGAGATAAGAAGGGCCGCATTCGTGCTGAAAATGTGGGTAGTGGAGCAGAAATCAACCATCAGG TAGAAGCACATGCAAGTGTTAATGATGAACCTGGCATCCAGCAAATGAATTCTGAAGCATTCACATCAGAAGTAATGAAG GATTCTGAGATTGGAATGTCAGTTAATTATCATGAGAAAGAGACATTTGCTGGGGAGGGTGCTATTGCTCTTAATGGCCA AGAGACATTTGAAAATGGGAAGTCACAAGAAATGCATTGCAAAGAGAACAATCATGAGACTGTTGCTATTGAACAGTCTT CAGTGCCTAATGCAGGAATCCTAGAAAGGTGCACACTCATGGAGATGAACAAACAGCAATATGATGGAGAAATGATGCCA GACAATAAACTGTAA
Protein sequence (LotjaGi1g1v0345300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIDDHSLFQHWHYIPLSLFSFLICSLTSQVGLCREPQTPTHSHTHTHTHEGAMAATNEDFKGVSNCYVFKSRLQEYAQKV GLTTPVYETIKEGPSHEPYFRSTVIVNNVRYDSLPGFFNRKAAEQSAAEVALVELAKSAEANQPVSQPVHETGLCKNLLQ EYAQKMSYAMPLYNCKKEETPGRAAGYSCTIDIGGILYIGGTAKTKREAELKAARTALLAIQSSPSHATENQLTVIPCRK RATTVPLPDKTSKTPKPKKERFKRKSAKRKQYRDKKGRIRAENVGSGAEINHQVEAHASVNDEPGIQQMNSEAFTSEVMK DSEIGMSVNYHEKETFAGEGAIALNGQETFENGKSQEMHCKENNHETVAIEQSSVPNAGILERCTLMEMNKQQYDGEMMP DNKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| SignalP_EUK | 1 | 33 | 33 | - | – | |
| Phobius | 12 | 32 | 21 | - | – | |
| Phobius | 33 | 404 | 372 | - | – | |
| PANTHER | 46 | 318 | 273 | 1.8E-125 | – | |
| PANTHER | 46 | 318 | 273 | 1.8E-125 | ||
| SUPERFAMILY | 51 | 137 | 87 | 5.97E-22 | – | |
| ProSiteProfiles | 68 | 137 | 70 | 13.786 | ||
| SMART | 69 | 136 | 68 | 1.4E-16 | ||
| CDD | 69 | 135 | 67 | 2.27827E-16 | ||
| Gene3D | 69 | 150 | 82 | 2.1E-23 | – | |
| Pfam | 70 | 132 | 63 | 2.2E-13 | ||
| Gene3D | 151 | 223 | 73 | 1.6E-20 | – | |
| ProSiteProfiles | 154 | 223 | 70 | 11.48 | ||
| SMART | 155 | 222 | 68 | 2.7E-13 | ||
| CDD | 156 | 221 | 66 | 5.4478E-15 | ||
| Pfam | 156 | 219 | 64 | 5.8E-13 | ||
| SUPERFAMILY | 156 | 225 | 70 | 1.73E-14 | – | |
| MobiDBLite | 243 | 277 | 35 | - | – | |
| MobiDBLite | 257 | 275 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Double-stranded RNA binding | Interacting selectively and non-covalently with double-stranded RNA. |
Expression pattern of LotjaGi1g1v0345300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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