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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0349600 |
| Transcript ID | LotjaGi1g1v0349600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger homeodomain protein 1; TAIR: AT4G24660.1 homeobox protein 22; Swiss-Prot: sp|A2Z259|ZHD1_ORYSI Zinc-finger homeodomain protein 1; TrEMBL-Plants: tr|V7ASQ1|V7ASQ1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0349600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:81940625..81943035) extracted from Lotus japonicus Gifu genome v1.2.
TGAAAATGAAGTGTATAAAAAAAGAGGTGTGTATATATCATTACCCTAAAATTATACCTCTCCTATCTATAATGAAATCA CATTTACGTTGGTTCTTGATTCTGAGACTCAGAACTAAACATACATGCAATTATTATCTTTGCTTAAACATATCTTGTGC TTTATGACTTTATTAAGCAATTGACTCAGCTCACCTCTCAACTCTCATGAGGAATTTAATTGTTGACTCTAGATAGATCT TCTTCTCCCACATAGTCCCACCTTACCCAAAGTCCAAATTAAACAGGATATTTTTTTTCTCAGAAAGTGGATAGCGATAT GGAGTTTGACGACCACGAAGACCTCGAGGAAGAAGAGGAGGAGGAAGAAGAAGAAGAAGAAGGAGAGGTCGAGATGGGGT TCACAGTGGCGCCGCCGGGATTTGACTCGCTAGGAAACTCAGCTGCGCGGTCCAAAACAGGCGGTGGCATAGAACCAGAA GGAGGTGCAGCAGCCACCGCCTTAGGCGTTGGTCGCAAAAATGGGTCCACAGGGACAGTCAGATACAGAGAATGTCAAAA GAACCACGCCGTCGGTATTGGCGGCCACGCCGTCGATGGCTGCTGCGAGTTTCTCGCCGCCGGACAGGAAGGTACGCTGG AGGCCGTAATCTGCGCCGCCTGTAACTGCCACCGGAACTTCCACCGCAAGGAGACCGGCGGCGAAATCACCTCCTACCAG CCACGGCCGCCGCAGCAGCAGCCAGCCTACCACCACCAGTTCTCCCCTTACTACCCCCGTGCCGAGCCACCGCCTTCCGC CGGCTACCTCCACCATCTGGTGACTCCACCGCTGTCCCAGCACCGACCCTTGGCCCTTCCACCGGCGGGTTCCGGCGGGT TCAGCAGGGAGGAGGAAGACATGTCGAACCCGAGTAGCAGCGGCGGAGGAACGAAGAAACGGCACAGAACAAGGTTCACG CCGGAGCAGAAGGATAAGATGCTGGAATTTGCGGAGAGGGTAGGGTGGAGGATCCAGAAGCATGATGAAGCTGCGGTGGA GCAGTTCTGTGAGGAAGCTTGTATCAAGAGACATGTTCTCAAGGTTTGGATGCATAACAACAAGCACACTCTTGGTAAGA AACCCTAATTTCCATCTCTTTGTTAATTTCCATTTTTAGGTCAAGAACATGGTTGGGCATTTTTGGTATCATCCTCTTTT CTCCAACTTCAATGAATTTTAGTCTCAAAATAGGATTATGAGTGAGACAAGAGAACTTTGTATTAATGTAAAATTTTAAT GGAGATCTAGCTAGGGTTCTTACTCCTTCTAATTCCTTCCCTAATTAATGTTCAGTCAGTTTATTTTTCCTCAGAATCAA TTTTAGCAGCACTCTGAAGCTATTCATATAAGTTAATTTGATTTTATCTCTAAAGAAGAGTTGCTTTGATTTGTTCTACT ATGTAATGGGATTTTAGTATTTGGTGATTTTATGGCAAACGATGAGATAAAGTGATAGACATGAACTAGCAAGTGGAAAT AAAGACAAAGAAACTTGGGAAGTCCATGGAGTGTTCATGCTTATCATCAAGTGACTGTATTGCAAAGAAAGTATGGAGAT GAGGACAGAGAATAAATGCCAAGATTAAGTTGAATTTAACGTGTATGGCATGCAAATGCAATGGTGTTTAATTTGCTTCG TTTTCATTCACATCTGTCATCTATTTCCTGTTTTTCCTCCTCCTCATCACCGCTCTACGATTATCCTTATTTCTCTCTCT CATATTAATGTCTCAACTCTTTAATTTTCTCTTTGCATATTAATTTCTTGACACATTTGAACCGTTCAAACGTACGCGAC CTCAAAATTCACAAACTATTCAATGAGTCAGACAAATTCTTGATCCAGAAAGTTCAATAAGTGAACCGTTTTGCTTCGGT CTCTCTGATAGAACCCTTGCAAATTCACCCCACTAGCTATAATTTTATGTTCTTTTTGCCATTAATTATTTTCAGATATT TAATTTCATTCTGCTACTTGTTCAAGACTAGCCAGTAGCCACCTTATCCTCCACTAGCTATTAATCAGTTTTTATGGGCT TTCAGTTAATTTCTTCCTTGACATCTTGGCTAGATGTTAACCCATTGAGTTGATGTAATGATTTAATATTTCATTCTTAG GCATGTAGTTGGAGGATTTGATTTCCAACTATTGTGAATGAAAAAAAAAAGTTTACAATCAGCTTCATATCATTCAGTTT ACTGATAGTGAATCGAGAGATTAATCTCATGACTATGGAGGTACATTGATTAATACTAAAAAAAATTCCTTGGCAAATGT TTTGTTTTTCTCAAATTAAATAAATAAATAACCTTTTAATAAATAAAAAGTGTGAAAGTAATTGAAAAACTAATTTAACT GTAAGTCACGC
CDS sequence (LotjaGi1g1v0349600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTTGACGACCACGAAGACCTCGAGGAAGAAGAGGAGGAGGAAGAAGAAGAAGAAGAAGGAGAGGTCGAGATGGG GTTCACAGTGGCGCCGCCGGGATTTGACTCGCTAGGAAACTCAGCTGCGCGGTCCAAAACAGGCGGTGGCATAGAACCAG AAGGAGGTGCAGCAGCCACCGCCTTAGGCGTTGGTCGCAAAAATGGGTCCACAGGGACAGTCAGATACAGAGAATGTCAA AAGAACCACGCCGTCGGTATTGGCGGCCACGCCGTCGATGGCTGCTGCGAGTTTCTCGCCGCCGGACAGGAAGGTACGCT GGAGGCCGTAATCTGCGCCGCCTGTAACTGCCACCGGAACTTCCACCGCAAGGAGACCGGCGGCGAAATCACCTCCTACC AGCCACGGCCGCCGCAGCAGCAGCCAGCCTACCACCACCAGTTCTCCCCTTACTACCCCCGTGCCGAGCCACCGCCTTCC GCCGGCTACCTCCACCATCTGGTGACTCCACCGCTGTCCCAGCACCGACCCTTGGCCCTTCCACCGGCGGGTTCCGGCGG GTTCAGCAGGGAGGAGGAAGACATGTCGAACCCGAGTAGCAGCGGCGGAGGAACGAAGAAACGGCACAGAACAAGGTTCA CGCCGGAGCAGAAGGATAAGATGCTGGAATTTGCGGAGAGGGTAGGGTGGAGGATCCAGAAGCATGATGAAGCTGCGGTG GAGCAGTTCTGTGAGGAAGCTTGTATCAAGAGACATGTTCTCAAGGTTTGGATGCATAACAACAAGCACACTCTTGGTAA GAAACCCTAA
Protein sequence (LotjaGi1g1v0349600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEFDDHEDLEEEEEEEEEEEEGEVEMGFTVAPPGFDSLGNSAARSKTGGGIEPEGGAAATALGVGRKNGSTGTVRYRECQ KNHAVGIGGHAVDGCCEFLAAGQEGTLEAVICAACNCHRNFHRKETGGEITSYQPRPPQQQPAYHHQFSPYYPRAEPPPS AGYLHHLVTPPLSQHRPLALPPAGSGGFSREEEDMSNPSSSGGGTKKRHRTRFTPEQKDKMLEFAERVGWRIQKHDEAAV EQFCEEACIKRHVLKVWMHNNKHTLGKKP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 54 | 54 | - | – | |
| MobiDBLite | 1 | 25 | 25 | - | – | |
| Coils | 3 | 26 | 24 | - | – | |
| PANTHER | 13 | 267 | 255 | 9.5E-92 | – | |
| PANTHER | 13 | 267 | 255 | 9.5E-92 | – | |
| Pfam | 74 | 126 | 53 | 3.8E-27 | ||
| TIGRFAM | 75 | 125 | 51 | 9.7E-26 | ||
| ProSiteProfiles | 76 | 125 | 50 | 26.733 | ||
| MobiDBLite | 173 | 215 | 43 | - | – | |
| Gene3D | 190 | 266 | 77 | 1.9E-31 | – | |
| SUPERFAMILY | 194 | 267 | 74 | 3.93E-20 | ||
| TIGRFAM | 206 | 262 | 57 | 2.7E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0349600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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