Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0351900.1

Overview

Field Value
Gene ID LotjaGi1g1v0351900
Transcript ID LotjaGi1g1v0351900.1
Lotus japonicus genome version Gifu v1.2
Description Myb transcription factor; TAIR: AT4G37260.1 myb domain protein 73; Swiss-Prot: sp|Q9FDW1|MYB44_ARATH Transcription factor MYB44; TrEMBL-Plants: tr|Q0PJI9|Q0PJI9_SOYBN MYB transcription factor MYB124; Found in the gene: LotjaGi1g1v0351900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:82347323..82348789) extracted from Lotus japonicus Gifu genome v1.2.

CTTTGATTAATAACTAATGACATAAAGACATGCAATGAAGGAAACAAAAACCAAGCGGTGGCGCCAGACATAAATGCATG TAAAAGGAAGATGTAGAGGAAATTTCAAAGGGGACAAAATGGTAAAAGAGAGATGAAATCAGAGTGTGGCAGCCAGCCAG AAAGGTTTGGTCTCAGATATCAAATCGCATCTCCTGCAGAGAGTCATTGTAGTTAGACCCTCCGCACCCACCAACATTAC CAAAAGCCCAGTTTCCTGGAAGTACCCTTCCCTTCACGCTCACATTATTATTATATTTTAATCAATTATTCTATCCAATG TCTACATGCACCTTTAACTAACAAAAACCACACACCCTCTCTTCATATATAAACCCAAACAACCAACACTCTCTTAGTCC ATTCCATTCCATTATTACATTCCTTCATTCTTATCATATCACCGATTGAGCTCACTGAAATTAATCTGAGTATGGAAGCA CCGAACAGAAGCTCCTCTACTACCACTTCTTCATCAGACTCATGCTCTTCAGATTCCAATCCTAGGAGTAACAATCCTAA TAGACCTGAGAGGATCAAAGGTCCATGGAGCGCTGAGGAAGACAGGATCCTGACCCGGCTCGTGGAGCGGCATGGGGCAC GAAACTGGTCCCTCATCAGCCGCTACATTAAGGGGAGGTCAGGGAAATCCTGCAGGCTGCGGTGGTGTAACCAGCTGAGC CCCACCGTGGAGCACCGTCCATTCTCGGTACAAGAGGATGAAACCATCATCGCCGCCCATGCACGGTTTGGGAACCGGTG GGCCGCCATTGCCCGGTTGCTGCCGGGTCGGACTGATAATGCCGTGAAGAATCACTGGAACTCCACGCTCAAGCGGAGGG TGCCCGGTGGTGGTGGTGGTTCTCATGAGGTGGGGCCAAGTTCTTCTGGTAGTGCTGCAGCTCGCATGGAGGATGATGAT CCGTTGACCGCGTTGACTCTGGCTCCGCCGGGGATTGGGAATAGTTCTGTGGAGGAGGTTGTGGCTGACCACCACCACAA CTACCAGCAACACCACCACCGGCAGTCGCAGTCGCAGGAGAGTGTTCCGGCGGGGTTTTGGGATGTGATGAGAGATGTGA TTGCGAGGGAAGTGAGGGAATACGTGTCTTCCAATATTTCTCACAACTCGGGTTTTCATTAATCAATTTTTCATCATTTT ATCGTTTTTTTTAAGCAAATTAATATCTGCAGTCTGCACTTTGATATATTTTTTTTTCATTTGTGATTGGAATGAACAAT CGTGTTAATAACAATTTAATTTTCTCTTCATATCTGAATTTATTAATTTATTAGTATTAGTTTCTTATGGAGATTAGTAT TAGTTTCTTATGGAGATACTGCAACAAATATATATCCTTGTGTCTTGTGTGTATTCGAATTTCGAAGTACTGCTTACCAA GTGGAATTTTGTAAGGTCGATGGTCAT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0351900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGCACCGAACAGAAGCTCCTCTACTACCACTTCTTCATCAGACTCATGCTCTTCAGATTCCAATCCTAGGAGTAA CAATCCTAATAGACCTGAGAGGATCAAAGGTCCATGGAGCGCTGAGGAAGACAGGATCCTGACCCGGCTCGTGGAGCGGC ATGGGGCACGAAACTGGTCCCTCATCAGCCGCTACATTAAGGGGAGGTCAGGGAAATCCTGCAGGCTGCGGTGGTGTAAC CAGCTGAGCCCCACCGTGGAGCACCGTCCATTCTCGGTACAAGAGGATGAAACCATCATCGCCGCCCATGCACGGTTTGG GAACCGGTGGGCCGCCATTGCCCGGTTGCTGCCGGGTCGGACTGATAATGCCGTGAAGAATCACTGGAACTCCACGCTCA AGCGGAGGGTGCCCGGTGGTGGTGGTGGTTCTCATGAGGTGGGGCCAAGTTCTTCTGGTAGTGCTGCAGCTCGCATGGAG GATGATGATCCGTTGACCGCGTTGACTCTGGCTCCGCCGGGGATTGGGAATAGTTCTGTGGAGGAGGTTGTGGCTGACCA CCACCACAACTACCAGCAACACCACCACCGGCAGTCGCAGTCGCAGGAGAGTGTTCCGGCGGGGTTTTGGGATGTGATGA GAGATGTGATTGCGAGGGAAGTGAGGGAATACGTGTCTTCCAATATTTCTCACAACTCGGGTTTTCATTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0351900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEAPNRSSSTTTSSSDSCSSDSNPRSNNPNRPERIKGPWSAEEDRILTRLVERHGARNWSLISRYIKGRSGKSCRLRWCN QLSPTVEHRPFSVQEDETIIAAHARFGNRWAAIARLLPGRTDNAVKNHWNSTLKRRVPGGGGGSHEVGPSSSGSAAARME DDDPLTALTLAPPGIGNSSVEEVVADHHHNYQQHHHRQSQSQESVPAGFWDVMRDVIAREVREYVSSNISHNSGFH
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 30 30 - –
MobiDBLite
mobidb-lite
1 40 40 - –
PANTHER
PTHR45614:SF85
2 191 190 2.0E-100 –
PANTHER
PTHR45614
2 191 190 2.0E-100
IPR015495
ProSiteProfiles
PS51294
31 86 56 26.734
IPR017930
SUPERFAMILY
SSF46689
33 129 97 2.77E-31
IPR009057
Gene3D
G3DSA:1.10.10.60
35 87 53 1.0E-21 –
SMART
SM00717
35 84 50 1.7E-16
IPR001005
Pfam
PF00249
36 81 46 8.5E-16
IPR001005
CDD
cd00167
38 80 43 1.29617E-15
IPR001005
SMART
SM00717
87 135 49 4.8E-15
IPR001005
ProSiteProfiles
PS51294
88 137 50 19.93
IPR017930
CDD
cd00167
90 133 44 7.40617E-12
IPR001005
Pfam
PF00249
90 131 42 1.1E-13
IPR001005
Gene3D
G3DSA:1.10.10.60
90 163 74 7.4E-19 –
MobiDBLite
mobidb-lite
133 159 27 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0351900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…