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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0358800 |
| Transcript ID | LotjaGi1g1v0358800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein 45B; TAIR: AT3G01360.1 plant viral-response family protein (DUF716); Swiss-Prot: sp|Q3T130|TM45B_BOVIN Transmembrane protein 45B; TrEMBL-Plants: tr|I3T1U4|I3T1U4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0358800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:83349576..83353476) extracted from Lotus japonicus Gifu genome v1.2.
CTTGAAGAATTTTTTTGGTCAAGTCCTGCCTAGCTTTTTGAAGCCGCTGAATTTGACAGTTGACCCAAGCTCGAGTACAA AACACCGATCCCCACCTTCATCGTCATCTTCCTCCACCGCTGAGATCGAAAATTCCTGCTAAGATCCCCTTCCGATTCTG CTAACGATGGAACTCCTCTCCTTCGCCTTCGCCGGCGGTGGCTTCATCCTCATCGGAGCTCTCGAATCCCTCGGCGCTTC TTCTACCTCCAATCCAGATTCCAAAACCAAGAAAAACCACCGATCACCCTTTTTCATCTCCATCGCCATCTTCTCCTCCT TCATCATCCTCAACTCTCTGGTTTCTATCTTCGACGCTCACAAGTCAAACGACGCCGTTGGCACCGCCCTTCAATTCCAG GTCCTCGCCATCGCTTTGATCTTCCTCCTATACTCAGTTCTAGCCCTCTTAGTCCCTCTCCCCTCACGGTTACTGGGTAT GGTCGTCGCCTTCGGCTTCGCGGAGGAGTTTCTCTTGTTCTACCTTCAGAGGAAAGATCCCAGCGGGGTTGAGAATCGCT ACTATGATCTCTTGCTCGTGCCCATCGGGGTATGCGTTTTCTCCACCGTTCTAGAGCTGGTATCTTCTCAGGAAACGAAT AATGTTGCGAAATTATCACGTGGGGTTGGGTTGAATCTTCAAGGAACGTGGTTTGTTCAGATGGGGTTTTCACTGTTCTC AAATTGGGTAGCTGAAGGGTGTTCTTTGCATGGAGTGAGTAGAGGGAACTACACCTTGAGGTGCAAGGGACACCCTGAGT ATCACAGGGCTAGGGCTATTGCCACGCTTCAGTTCAATTGCCACCTTGCTCTTATGGTCATGGTTATGGTTGCCTCGTAC TCTGTCTTTTGTGGGAGGAATGGAGGTCCGGTTCACCCTGAAGCTTCGAGGTACACGCCGCTTGGAGCTGAGATGCAGTC TTTGGAGAATTCAGCTACCTTCACATTGGATTCTGATGATGAAGACATTAAGGATGGCAATGTAGGGAGCCAGAAGGGAG TTGTTGTTGTCGAGCATGGTATGAATGGTAATGCCACTAATCATTGAGATGTTTGTCCAATGCAGTCACGTTTTCCTTTC TGTAGTTTATCTCTGCCGCCTTCTCCTAGTTTGTTTGGAATCATGTTGTACAAAAAGATCATGTTGTAGTTTTTCATTTT ATGTATGAAATTCTGACTTTTGGTCCTTTCAAGTATGTATGACTCCATGCATTTTAAGTGTGTATCTAATTTCTTCATTT AGTATAGTTTGTTTTGAAGTTTCTAGATTATAATGTAACTATGTTGTTGAGGGTTCATATGCATTATGAGGATTTATCTG TATAACTTTGCTTTATTTGTTGTGCCACCAATCTTGATGATAAATTAGTTCTTCCCTTGAACATCTTTTAATTGTTTTAA TTTACCACATTTGTGTTCCACTCCTTTCTTGTTATGCCATTCACCTTAATTTAAGCATTTGCTGCTACATGCTTTGCTTG CGTGGTTGTCATACCCTCCTAGGTCTCTAACATGGATTTCCGTTGGCATGTCCGACTTTTGAATTATTCAAATTCTTGGA TTATATTTACAAGCCCTACTCGCATAGTAGCTCGAGGCTTGGGAGCTGTGTAGCCTCGCATGTTTCTTAGGGATGATCTC CTAGTTGGACCTAAATCCTCCTAGGCTTCACACTCGATTCTTACTTGGGCTGAATGTTCGATCTTAGGCCAATGTTTAGG TTGGATCCTTGTATTCCTTCTATAAATGATAATAAGCATACTAATCATGAAGCAAGTCAGCGTTGTACACATTAATGATG AGGCCTTTAGATCTTCCTGGGATGTTTGGAGGGGGGAGCTAATAAGAATGGGGTCGAGAACACAAAAGCACCATCACACA CCAGCTCTTGGGTCCAGCATTTGGTCAATCTTTTATTTAACTCGCCTTGAGAGTATCTGCGTAAACAATCTCTATTCTAA CTTTCTAGCCTCATTTTCAAACTCTAAATGACCATCTCTTTGCTAACTTTCTAACCTCATGTTTGTGCACGTCTCTTTGT CCTGCTTACACGATTCTTGTTGCTTCCTGTTTCTATTTTCCTCTTTTTGACTAGTCCATACATGTGCTGTGAACAGCACT GCATTTGCTGAATCTTATGATATAGCTTTCCTGATTTCTGCAAGTCATTGAAACTATTTGTTGTTGAGTCAACTTGGTTA TCACAATAGCGGTTGCATGATGCTGGATTCCCCTCTACTGTATAATTGAGTTTTGTTCTTTTTATTTGGTGTTGTCTGTT TTATTCTAGATGTTTAGATATACAATAAGAGAATGTAGATGCGTATTTATACTGTAACCTGTGAGTAATTTCTTGTGTTT TGCTAAACGAAACTAATTTCCTTTGCAGTTAGAGTTTCCTCTGGTTCAAATACTATATTCTTGTGACTGATTACATCAAA GTATGTATGATATTGGCCTGGGGTTTAGACTATAAATAATAATGAAAATGAACAATATCATTGGTTTGGAACTAGGAGGA GTCAACCTTGGATACTGAAAAGACTTCAGAAATCCAATTTAAAAGTGGAAATGAAGGAAATGTTCTAAATATTAACCCTT TAAGTGGTAATGCTTCACTAATTGTATGATAAATACTTGAAAACACCTGTTTATTAGGACCCTGTAAAATTAAAATGTTC CGAAGCTGACTGGACTAGTTAATATTCCCATTGTTTGCTTTTGTGTGATTAAGCACAGGTAGCTCAGGTTGGTTAACACT TGATAAGGCATCTCAAATTAACGAACAATGATCTTGTAGTGATAGTCTGACATTTATATGATTAAGCACGTTACTTATGG ACGCATTTCGCACTAACTGATTGCTGTCTAGTAGTAATTCCAAGAAGAACTTTTACTTTCTGTGAAAATACAAATTGCAC CGTAACAGATCATCATCCTAATTCCTAACTAAGCTTTTTTCTTATTAACTGATGTGTATTAGTATGTAGAGAAAATTAGG AATCGTGAAATAATAGAATATATATCATTTAGTGTGTATCTTTTGATCCTTCAGCTGAAATATATCATTGGGTTGTGAGC TGTCAGTAAGGGTAAGTGCTTCATATAATTTATTGCATCATTATTTGCTCTTTCTATTGTGCAAGTTGACCTTAGGAGTA TTCATGAGGAGCAGCACACTTGTCTATATGAAGTAATGCATCATGCCACTCCAACACTTCATAGCATAGCTTGATTGTGT GAAGTGGAGTATTAGGACTTTCTTTAACCAAAAGGGAGAGAAAAATGCTAACAACAATCACTTTTCAACACTATCTTATT GATTAGTTGAAATTCATGCGAGATCTACTGAAAACATGAATTTCAACTAATCAATAAGATAGTGTTGAAAAGTGATTGTT GTTAGCATTTTTCTCTCCCTTTTGGTTAAAGAAAGTCCTAATACTCCACTTCACACAATCAAGCTATGCTATGAAGTGTT GGAGTGGACATGAATTTCATTTCCAATTTAATGAGGCCTACATGAATTTCAATCAATCAATGAAAGAGTGTTAGAGTGAG TGTTGCTAGAACTCCACCAAGAGAAAAGATATGGCATTTTGGTTCCATTTTATTGGGCCCTCTTGTGGAATCAAATTATT GGGTTCTCTCATACGTCATAACAATGACACTGTTCCTTGAAAAAAGTAATTTAGATATTGAGTCCGTTTGGATACGGGTT TATTGAAGCTTATATACTAGAAAATGCACTAAATAAGTTCTAGTAAGTCGTCATTGATATACATTCAAACAGGTACATTG TTTTGACAAAAAAAAACAGGTACATTGTTAATTGTTTGTTGTACCCTCTTGCTTCTCTCAG
CDS sequence (LotjaGi1g1v0358800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACTCCTCTCCTTCGCCTTCGCCGGCGGTGGCTTCATCCTCATCGGAGCTCTCGAATCCCTCGGCGCTTCTTCTAC CTCCAATCCAGATTCCAAAACCAAGAAAAACCACCGATCACCCTTTTTCATCTCCATCGCCATCTTCTCCTCCTTCATCA TCCTCAACTCTCTGGTTTCTATCTTCGACGCTCACAAGTCAAACGACGCCGTTGGCACCGCCCTTCAATTCCAGGTCCTC GCCATCGCTTTGATCTTCCTCCTATACTCAGTTCTAGCCCTCTTAGTCCCTCTCCCCTCACGGTTACTGGGTATGGTCGT CGCCTTCGGCTTCGCGGAGGAGTTTCTCTTGTTCTACCTTCAGAGGAAAGATCCCAGCGGGGTTGAGAATCGCTACTATG ATCTCTTGCTCGTGCCCATCGGGGTATGCGTTTTCTCCACCGTTCTAGAGCTGGTATCTTCTCAGGAAACGAATAATGTT GCGAAATTATCACGTGGGGTTGGGTTGAATCTTCAAGGAACGTGGTTTGTTCAGATGGGGTTTTCACTGTTCTCAAATTG GGTAGCTGAAGGGTGTTCTTTGCATGGAGTGAGTAGAGGGAACTACACCTTGAGGTGCAAGGGACACCCTGAGTATCACA GGGCTAGGGCTATTGCCACGCTTCAGTTCAATTGCCACCTTGCTCTTATGGTCATGGTTATGGTTGCCTCGTACTCTGTC TTTTGTGGGAGGAATGGAGGTCCGGTTCACCCTGAAGCTTCGAGGTACACGCCGCTTGGAGCTGAGATGCAGTCTTTGGA GAATTCAGCTACCTTCACATTGGATTCTGATGATGAAGACATTAAGGATGGCAATGTAGGGAGCCAGAAGGGAGTTGTTG TTGTCGAGCATGGTATGAATGGTAATGCCACTAATCATTGA
Protein sequence (LotjaGi1g1v0358800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELLSFAFAGGGFILIGALESLGASSTSNPDSKTKKNHRSPFFISIAIFSSFIILNSLVSIFDAHKSNDAVGTALQFQVL AIALIFLLYSVLALLVPLPSRLLGMVVAFGFAEEFLLFYLQRKDPSGVENRYYDLLLVPIGVCVFSTVLELVSSQETNNV AKLSRGVGLNLQGTWFVQMGFSLFSNWVAEGCSLHGVSRGNYTLRCKGHPEYHRARAIATLQFNCHLALMVMVMVASYSV FCGRNGGPVHPEASRYTPLGAEMQSLENSATFTLDSDDEDIKDGNVGSQKGVVVVEHGMNGNATNH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 1 | 18 | 18 | - | – | |
| PANTHER | 1 | 303 | 303 | 3.6E-117 | – | |
| PANTHER | 1 | 303 | 303 | 3.6E-117 | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 15 | 18 | 4 | - | – | |
| Phobius | 19 | 41 | 23 | - | – | |
| TMHMM | 40 | 62 | 23 | - | – | |
| Phobius | 42 | 62 | 21 | - | – | |
| Phobius | 63 | 73 | 11 | - | – | |
| Phobius | 74 | 96 | 23 | - | – | |
| TMHMM | 77 | 96 | 20 | - | – | |
| Phobius | 97 | 101 | 5 | - | – | |
| Phobius | 102 | 120 | 19 | - | – | |
| Pfam | 102 | 238 | 137 | 2.5E-39 | ||
| TMHMM | 103 | 120 | 18 | - | – | |
| Phobius | 121 | 131 | 11 | - | – | |
| Phobius | 132 | 153 | 22 | - | – | |
| TMHMM | 135 | 154 | 20 | - | – | |
| Phobius | 154 | 172 | 19 | - | – | |
| TMHMM | 167 | 189 | 23 | - | – | |
| Phobius | 173 | 197 | 25 | - | – | |
| Phobius | 198 | 217 | 20 | - | – | |
| TMHMM | 218 | 240 | 23 | - | – | |
| Phobius | 218 | 241 | 24 | - | – | |
| Phobius | 242 | 306 | 65 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0358800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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