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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0358900 |
| Transcript ID | LotjaGi1g1v0358900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RAN GTPase-activating protein 2; TAIR: AT1G47200.1 WPP domain protein 2; Swiss-Prot: sp|Q9M7N6|MAF1_SOLLC MFP1 attachment factor 1; TrEMBL-Plants: tr|A0A151TTY3|A0A151TTY3_CAJCA MFP1 attachment factor 1; Found in the gene: LotjaGi1g1v0358900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:83356535..83357903) extracted from Lotus japonicus Gifu genome v1.2.
TAAACACACTAGAAAACACTACAATTCTGACAGCCCCTGTCTTTTAAGGCAGAAGTGTTTGCTGTTTACGGAACAATCCC TAACCTCAATCCCTCCCATTACCATTACCCCTCTCAAAATGTCCGACTCGGAAATCACCTCCGCTGCCGCACCGGAGCAA GAAACCACCGTCCAACCACCGCAGCCCAACCCTGAGAAACCCTCCGCCACCAACCTCAGCGGCATCTCCTTCAGCATTTG GCCTCCCACCCAGCGCACCCGCGACGCCGTCATCAACCGCCTGATCGAAACCCTATCCACCCCCTCTGTCCTCTCCAAGC GCTACGGAACAATGCCTGCCGATGAGGCCTCCGCCGCTGCTCGCCAGATCGAGGATGAGGCCTTTGCTGCCGCCGGTGGC TCCGCCGCTGCTGATACCGACGGCATCGAGATCCTCCAGGTGTACTCCAAGGAGATCAGCAAGCGGATGCTCGATAGTGT CAAGTCCAGAGCCACCACAGGTTCCGCCGCCGCTGATAACGGTGCTTCTGATGTTCCTCCTTCCCCTTCCCCTGCCGAAG AGGATGCTCCTCCCGCAGCTGATTCTGAAACCTGATTATCATCAGGGTTTATAGTATGTTATTGAGGGATTATATTTTAA TGTTTTTGTTATACTAGGATGATCTATCTATCTGTCTGTGGAACCTTATTATATTTCTTGTGCCACCACTGCTGATTATA ACCTTTCCCTTGAACCTATACCATGGTGTTAAAGTTTACCTCATTTGTGTTCAACTTATTGCCTCTGCTTGCTTTGATTT GGAAAATGTTGTGGAATTTGGAAAAATGTCTCTATTTAAACTTTCTAGCCTCATTTTGTGAATCCCTCTGTCTTTGTAGA CATGGTTATTGTTGTTTCCTTTATTGATTTTCTACACCTGCTAGTCATTGAATCTATTTATTTGGTAACAAGTTAACTTT GTTATCATAATATTCACTATCATCAGTTAAGTGTTACTGTGATCTCCACTGTTGTGCAATTGGGTTCTGTTCTCTTTATT TAGTTTTGAGTCCTTTATTTCAGATGTTTTATAGATATACAATGAGGGAAACTAGATGAGTCTTTATACTGAAACCTGTG CATAATCAATTTCTAGTTTTTTCTCTATACAAAAATGATTTCCATTGAAGTTACCATTGGTTCAAGTTTTCTGTTCTTGG GACTGATTAGAATTAGATCAAAGTATCTATGATCTTGACCCGGGGTTAAGATTTTAGACTGATAAATATTTATGGCAAAG GACAATGGGTAGCATGGGTTTGGAAATGGGAGTAGTCAACCTTAGATAAATTTCTGAAACTACTTAGAAATGGAGGAATT GCCCTCAAT
CDS sequence (LotjaGi1g1v0358900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCGACTCGGAAATCACCTCCGCTGCCGCACCGGAGCAAGAAACCACCGTCCAACCACCGCAGCCCAACCCTGAGAA ACCCTCCGCCACCAACCTCAGCGGCATCTCCTTCAGCATTTGGCCTCCCACCCAGCGCACCCGCGACGCCGTCATCAACC GCCTGATCGAAACCCTATCCACCCCCTCTGTCCTCTCCAAGCGCTACGGAACAATGCCTGCCGATGAGGCCTCCGCCGCT GCTCGCCAGATCGAGGATGAGGCCTTTGCTGCCGCCGGTGGCTCCGCCGCTGCTGATACCGACGGCATCGAGATCCTCCA GGTGTACTCCAAGGAGATCAGCAAGCGGATGCTCGATAGTGTCAAGTCCAGAGCCACCACAGGTTCCGCCGCCGCTGATA ACGGTGCTTCTGATGTTCCTCCTTCCCCTTCCCCTGCCGAAGAGGATGCTCCTCCCGCAGCTGATTCTGAAACCTGA
Protein sequence (LotjaGi1g1v0358900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDSEITSAAAPEQETTVQPPQPNPEKPSATNLSGISFSIWPPTQRTRDAVINRLIETLSTPSVLSKRYGTMPADEASAA ARQIEDEAFAAAGGSAAADTDGIEILQVYSKEISKRMLDSVKSRATTGSAAADNGASDVPPSPSPAEEDAPPAADSET
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 40 | 40 | - | – | |
| MobiDBLite | 1 | 17 | 17 | - | – | |
| PANTHER | 7 | 149 | 143 | 1.7E-57 | – | |
| PANTHER | 7 | 149 | 143 | 1.7E-57 | – | |
| Pfam | 37 | 128 | 92 | 4.8E-41 | ||
| Gene3D | 37 | 132 | 96 | 1.0E-39 | ||
| MobiDBLite | 118 | 158 | 41 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0358900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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