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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0362100 |
| Transcript ID | LotjaGi1g1v0362100.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heptahelical transmembrane protein 4; TAIR: AT4G37680.1 heptahelical protein 4; Swiss-Prot: sp|Q9SZG0|HHP4_ARATH Heptahelical transmembrane protein 4; TrEMBL-Plants: tr|A0A072VCF7|A0A072VCF7_MEDTR Hemolysin-III-like protein; Found in the gene: LotjaGi1g1v0362100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:83667236..83668621) extracted from Lotus japonicus Gifu genome v1.2.
TTATACTAGACGTTACCAATTTTCATTGAGATTAGGAGACATTGATTTCTCACAATTTTGATATTGTTACAGAATGGTGT GAAAGATGATACAATATCCACCTTAATAGTCAAACCAATTACAAGGTGGCCTTTTTATGCCTTCTTAGGTGGTGCCATGT TCTGTTTGCTAGCCAGCAGCACATGCCACCTCTTTGCTTGTCACTCACAGCGGCTCTCCTACATCATGCTCAGAATAGAC TATGCAGGAATTGCAGCATTAATTGCAACTTCATTTTACCCTCTTGTGTATTACTCATTCATGTGCAACCCCTTTTTCTG CTACCTCTACTTAGGCTTCATAACACTAATGGGGATTGCTACCATTGCCTTCTCTCTTCTCCCATTTTTCCAAAAGGCTG AGTTTAGAAAGTACCGTGCTTCACTCTTCTTCTTAATGGGGTTTTCAGGCGTGGTTCCGATAATTCATAAGGTGATACTG CACAAGCATCAACCTGAGGCTTTGCAAACTACTGGCTATGAGATATTGATGGGAGTTCTTTATGGTTTGGGAGCTCTGAT CTATGTTACGAGGATACCAGAGAGATGGCGGCCTGGGAAGTTTGATATTGCTGGACATAGTCACCAGCTTTTTCATGTGT TGGTTGTGGCAGGGGCTTACACACACTATCAAGCTGGGTTGGTCTACCTGAGATGGAGAGATTTGAAAGGTTGTTAGCAG GGTTTTAAATTGTAGTTGTGGTCGCGGTTGCGGCTACATTTTGGAATTGCTGACAAATATGAGTTGAAAAGGCCGCAATT GCAATCGTAATTTCATTGCAGTAACTTCACATTTACATTGCGGACCGCAATTTAAAACCCTTGTTGTTAGGTGATAGGTA ATGAATGTTAGCTATCAATTGGAGGAAACAACGAAGAATAGTGTTTGATTCACTCTTATTGGGGATACACCACATTTATT GACATGTAAATATGACTATGATGAGAAAAGAGAGATGTGGTGAGACATGTAATAGAAAAGGAAGAGATACAGAAAGCTAT AAAGTGAGTGTAGAAAGTGGTACCATGTGGAATACCCTTCATTGCTCTTTGCTGTGTTGGACAGCTGAATGTGTGAACAA ACAAGCCCATAATGCAGAGTCAGGAAGGAGCTAAGAGGTGACATGGAAATGCTGTGGTATCCCAAGTTTGTTGTAATGTA TTACATGTAGCTAATTCACGTAGGAGGGGGCCTTTTATTTGTTGGAATTCATGTGGTTTACATCAAATTGGAGTAATAAT TAAGTGTGTCTTAGATTGACCTTAATTTACTAAGATAGAAATCAGGGATAAATGAGAAAAGTGATTTGTGTTGGTAATTT TGTGAAATATAATTATAAAATCTCAC
CDS sequence (LotjaGi1g1v0362100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCTGTTTGCTAGCCAGCAGCACATGCCACCTCTTTGCTTGTCACTCACAGCGGCTCTCCTACATCATGCTCAGAAT AGACTATGCAGGAATTGCAGCATTAATTGCAACTTCATTTTACCCTCTTGTGTATTACTCATTCATGTGCAACCCCTTTT TCTGCTACCTCTACTTAGGCTTCATAACACTAATGGGGATTGCTACCATTGCCTTCTCTCTTCTCCCATTTTTCCAAAAG GCTGAGTTTAGAAAGTACCGTGCTTCACTCTTCTTCTTAATGGGGTTTTCAGGCGTGGTTCCGATAATTCATAAGGTGAT ACTGCACAAGCATCAACCTGAGGCTTTGCAAACTACTGGCTATGAGATATTGATGGGAGTTCTTTATGGTTTGGGAGCTC TGATCTATGTTACGAGGATACCAGAGAGATGGCGGCCTGGGAAGTTTGATATTGCTGGACATAGTCACCAGCTTTTTCAT GTGTTGGTTGTGGCAGGGGCTTACACACACTATCAAGCTGGGTTGGTCTACCTGAGATGGAGAGATTTGAAAGGTTGTTA G
Protein sequence (LotjaGi1g1v0362100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFCLLASSTCHLFACHSQRLSYIMLRIDYAGIAALIATSFYPLVYYSFMCNPFFCYLYLGFITLMGIATIAFSLLPFFQK AEFRKYRASLFFLMGFSGVVPIIHKVILHKHQPEALQTTGYEILMGVLYGLGALIYVTRIPERWRPGKFDIAGHSHQLFH VLVVAGAYTHYQAGLVYLRWRDLKGC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 186 | 186 | 1.3E-131 | – | |
| PANTHER | 1 | 186 | 186 | 1.3E-131 | ||
| Phobius | 1 | 1 | 1 | - | – | |
| Pfam | 1 | 171 | 171 | 3.1E-53 | ||
| Phobius | 1 | 17 | 17 | - | – | |
| Phobius | 2 | 13 | 12 | - | – | |
| Phobius | 14 | 17 | 4 | - | – | |
| Phobius | 18 | 26 | 9 | - | – | |
| TMHMM | 22 | 44 | 23 | - | – | |
| Phobius | 27 | 48 | 22 | - | – | |
| Phobius | 49 | 54 | 6 | - | – | |
| TMHMM | 54 | 76 | 23 | - | – | |
| Phobius | 55 | 78 | 24 | - | – | |
| Phobius | 79 | 89 | 11 | - | – | |
| TMHMM | 89 | 108 | 20 | - | – | |
| Phobius | 90 | 108 | 19 | - | – | |
| Phobius | 109 | 119 | 11 | - | – | |
| TMHMM | 118 | 137 | 20 | - | – | |
| Phobius | 120 | 138 | 19 | - | – | |
| Phobius | 139 | 157 | 19 | - | – | |
| TMHMM | 158 | 180 | 23 | - | – | |
| Phobius | 158 | 178 | 21 | - | – | |
| Phobius | 179 | 186 | 8 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0362100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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