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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0363300 |
| Transcript ID | LotjaGi1g1v0363300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein, putative; TAIR: AT4G26650.2 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1; TrEMBL-Plants: tr|I1K893|I1K893_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0363300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:83850182..83853485) extracted from Lotus japonicus Gifu genome v1.2.
TCCATTTCCATTTGATGTACAATGAATGATGTTGTGAGAGAGGAGTTAATTTAGGAGCGAGTGAAGGTCAAAAGTGATTG TAGAAAAAGGGAAAGTGGGTGTTTTTGAGAGTGAAATTGGGGATTTAGGGTTTTGTACAGTAACCATGAATTGGAAGATG GATTCTGATAGAGCCAAGCTCTTTGTAGGAGGCATTTCCCGCGACACCACCGAAGAAATTCTCAAACACCACTTCACCAA GTACGGTAATGTCTCCGATTCCACCATTTCCATTGACCGCACCACTCGAAGCCCTAGAGGTTTTGGCTTCGTCACCTTCT TCGATCTCTCTGCAGCTCACAGAGCCCTTCAAGATACCCATGTCATACTTGGAAAAACGGTTCGTTCCCCTCATTTTCCC TTCAATTTCGCACTGTTTCACTCGGTAAAAATTGAATCTTGTTGAAATTTTTGGGAAATTTTGATTTATTGTTAGTTCTG TTTGGTTGTGTGTATAGGTAGAAGTGAAAAAAGCAATACCCAGAAGTGAACAGCAACTACAGCATAACCAATTTCAGAAT AATAGAGGGGGAAGTAATTATAGTAGTTATGACTGTAGCAATGACTATATTAGGACTAAGAAGATTTTTGTGGGAGGTTT GCCTGCTACTATATCTGAGGTGGAGTTTAAGAATTACTTTGAGAGGTATGGTAGGGTAACAGATGTAGTGGTGATGCAGG ACAGTGTGACTCGTCGGCCGAGGGGGTTTGGGTTCATTACTTTCGATTCGGAGGAGTCGGTGCAGAATGTTATGATGAGG AGTTTTCATGATTTGAATGGTAGACAGGTGGAGGTCAAGAGGGCTGTTCCGAAAGAGGGGAACCCTGGTTATGATGGTTT CAATGGGTTAAGGTATAAGAGTGAAAGAGGAGGCGCGAAAAGTTCACCTCATTATAGTCCTAGGAACATGGTTCCTGGCT ATGGTCCTTTGCCTTGGTATAATAGTGATGGAGTATATCCATATGGATCAGACACGTACGGTAGCTGGTACACTATGGGT GGGTATGTTGGGAATGGATATGCAGTTCCATCTGATGCTTATAGGAACTTTTGGTATGGGCAAATGGTAACTGGTCCTCA GGTGCCTTATGCTAGTGCATCGCCGTCCTTTGCATATGTGGGTGGTGGTAGGGTTGGGATAGTAGGTAGCGGTGCTGTAA CTTTGGGGTACAATGGCGTTCCTGGGTATGCAACAAATATGAAGTTTGATCAACCTTTTAATGCCAATGGATTTGTTCCA GGCAGTTTGACAGCACCTGATGGGGTTAAGCAGGACGTTGACTCTTCAAGTTTGAAAGGAAGCAATGGTGAAATCTCTAG CTAACAAACGTAATGGTCCTCGGGCCTTAATTCATCTAGGTAAATACTTGCTAACTGCTGCTTCTGGTCTATGAAAGGTT GGTATATTCTTGTTAGTTCTAATTTGTGAAGATACCTTTCTATGTGTCTTAGATGTATAATTTAGCAACCTGTCATGAGT AGCTATGGAGTTTTATCAGTAGAGGATTCAGGCATCTGTAAAATAATTTCATGCATAACCTTTTTTCTTTTCTTTTCTCA TTTTAACAGTTTGTGCACTTTGGTTTGTTTGCAGTAGCTCTGTTTCCCTTGCACTATCACATACTGTTGCTTCATGGGTT CTTTGTAGTTTGTACCTTTAGTAAAATGCATTTTTTTCTTTGCTAGGCTTTAACTAGTTGCAATGCTTATTATTTGTTTC ATAGATTCAATCAGTTCATGAATATGTGTGTATGAAAATGCATGGATTTTTATTTGGTCAAAAAAATGCATGGATTTCAA CATCATCTTTTTCTTATCTGATAGCAGATTGCTCTGTTACACCACCGTGGGTTAAATGTGGTATTAATTCACATTATGTT ATAAGAAAGATGCTAATTACACATTTTGCATCACATTCTTTATTAATGGGTGAATTTACATAAATCTCGTTAAATAAAGA TTATCTAGTGTCACTAACATCAAATTCACCAGATGATAGTGTTTTTTTTAGCTTTTCTGGAGTAAAACCTTTAATGTTCA CATGGATAGACTGAGCTAGTTATTACACTATTCAATGTTGGGTTGGTATTTGCTGTCCAGATTGTAATAGAACAGCTGTA AAATTTTCACGTGATATAAATGCACTTTCCATCTAGAAATAGTAAATTAGCTATTGGTGAGAAAGAAAAAAGAAATTTGT GCTGCCAAATCTATGCATCTGCCTTTGAACATATATAATTAGAAACTATACTTACTAACTTGACTTCACCTACGAGGTGC CATTATTAGTTGAGTTTGTTAGTAGTTCTTTAATTCAACTGCATAGATTGTTATCATTAGGTTGAAATATATTCTAGCGT AGCTATGGACAATGGATTAAGGGAAGTGCTGATTCCGAAGTGGGGGAAGTTGTATCTAATTGAATTAAAATTTTAATCTG AGAACTCAAATTTAAACAGGTGTTTTTGAGGTGCATACATTTTTGAAAGCTCATTGACTTTTGGCTGGAAGCATTTTTTT CTGAAGGACGTAAAGAACTATTTTACTTTCTATTTGTCGTATTTGTATCAGCTGATGAACATGTAGTCATCTGCTTGATC GTGGAATCCGTTTGGTGCTTCTATGGTTTGGATCTAATTACAACCATTATTCTTGGTAAAAGTTGAAAAGACCTCCATTC CAGAAAGATTGGCCTGAACTAGGCATCTTAATGCCACGTTTTTTAATTGAAACCATTGATTTTTTTCATCACCGAAAATG GTGACTCGACTTTCAATAGGCTACCAATATTAACTTTAAATAATTTGTAATTTAGATAGTGAAATTAAGGAGTTCAAATT TATAAGAAAGATATAAGGTATTTATTTTTATTCCCTAGGAAAATATGAAAGGCATAAGGTATATAGAAAACTAGATAATT ATTTTCAGAAAATCGTAAAAATTACACATTTTTGCTCAATACCTATGTTGAAAGTTGAAACCTAGAACCTTAAAGAGACT ATAAAAAGGAACAAAGTGTTAAACTTTCCATTCATTTAAGTTAGAGTTGTCACGTTCAAGCTGATAACTATAGGACATTA TATTATCGTTCTGGGCTGACCCACAATAGTTGTTGTTTGACAATTTGACAATTCAACCTAGCCCTTTGAGGGAACCAAAC AGGCCTACCTACCCCCACTTCATTTTTTTTATATAAATATGCTAAATTAACACATTGCAAGTTGTGTGCAGAAAAGAAAA TATGATAATGAAATTCATTTAACC
CDS sequence (LotjaGi1g1v0363300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTGGAAGATGGATTCTGATAGAGCCAAGCTCTTTGTAGGAGGCATTTCCCGCGACACCACCGAAGAAATTCTCAA ACACCACTTCACCAAGTACGGTAATGTCTCCGATTCCACCATTTCCATTGACCGCACCACTCGAAGCCCTAGAGGTTTTG GCTTCGTCACCTTCTTCGATCTCTCTGCAGCTCACAGAGCCCTTCAAGATACCCATGTCATACTTGGAAAAACGGTAGAA GTGAAAAAAGCAATACCCAGAAGTGAACAGCAACTACAGCATAACCAATTTCAGAATAATAGAGGGGGAAGTAATTATAG TAGTTATGACTGTAGCAATGACTATATTAGGACTAAGAAGATTTTTGTGGGAGGTTTGCCTGCTACTATATCTGAGGTGG AGTTTAAGAATTACTTTGAGAGGTATGGTAGGGTAACAGATGTAGTGGTGATGCAGGACAGTGTGACTCGTCGGCCGAGG GGGTTTGGGTTCATTACTTTCGATTCGGAGGAGTCGGTGCAGAATGTTATGATGAGGAGTTTTCATGATTTGAATGGTAG ACAGGTGGAGGTCAAGAGGGCTGTTCCGAAAGAGGGGAACCCTGGTTATGATGGTTTCAATGGGTTAAGGTATAAGAGTG AAAGAGGAGGCGCGAAAAGTTCACCTCATTATAGTCCTAGGAACATGGTTCCTGGCTATGGTCCTTTGCCTTGGTATAAT AGTGATGGAGTATATCCATATGGATCAGACACGTACGGTAGCTGGTACACTATGGGTGGGTATGTTGGGAATGGATATGC AGTTCCATCTGATGCTTATAGGAACTTTTGGTATGGGCAAATGGTAACTGGTCCTCAGGTGCCTTATGCTAGTGCATCGC CGTCCTTTGCATATGTGGGTGGTGGTAGGGTTGGGATAGTAGGTAGCGGTGCTGTAACTTTGGGGTACAATGGCGTTCCT GGGTATGCAACAAATATGAAGTTTGATCAACCTTTTAATGCCAATGGATTTGTTCCAGGCAGTTTGACAGCACCTGATGG GGTTAAGCAGGACGTTGACTCTTCAAGTTTGAAAGGAAGCAATGGTGAAATCTCTAGCTAA
Protein sequence (LotjaGi1g1v0363300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNWKMDSDRAKLFVGGISRDTTEEILKHHFTKYGNVSDSTISIDRTTRSPRGFGFVTFFDLSAAHRALQDTHVILGKTVE VKKAIPRSEQQLQHNQFQNNRGGSNYSSYDCSNDYIRTKKIFVGGLPATISEVEFKNYFERYGRVTDVVVMQDSVTRRPR GFGFITFDSEESVQNVMMRSFHDLNGRQVEVKRAVPKEGNPGYDGFNGLRYKSERGGAKSSPHYSPRNMVPGYGPLPWYN SDGVYPYGSDTYGSWYTMGGYVGNGYAVPSDAYRNFWYGQMVTGPQVPYASASPSFAYVGGGRVGIVGSGAVTLGYNGVP GYATNMKFDQPFNANGFVPGSLTAPDGVKQDVDSSSLKGSNGEISS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 96 | 95 | 1.3E-23 | ||
| PANTHER | 6 | 58 | 53 | 1.5E-82 | – | |
| SUPERFAMILY | 6 | 109 | 104 | 7.25E-26 | ||
| PANTHER | 6 | 58 | 53 | 1.5E-82 | ||
| ProSiteProfiles | 10 | 86 | 77 | 16.432 | ||
| SMART | 11 | 82 | 72 | 2.4E-20 | ||
| Pfam | 12 | 78 | 67 | 4.1E-15 | ||
| PANTHER | 30 | 252 | 223 | 1.5E-82 | ||
| PANTHER | 30 | 252 | 223 | 1.5E-82 | – | |
| Gene3D | 110 | 201 | 92 | 7.1E-25 | ||
| SUPERFAMILY | 112 | 216 | 105 | 2.15E-25 | ||
| ProSiteProfiles | 119 | 196 | 78 | 18.223 | ||
| SMART | 120 | 192 | 73 | 7.8E-23 | ||
| Pfam | 121 | 177 | 57 | 7.4E-14 | ||
| MobiDBLite | 344 | 366 | 23 | - | – | |
| MobiDBLite | 348 | 366 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | MRNA binding | Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. |
Expression pattern of LotjaGi1g1v0363300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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