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LotjaGi1g1v0364100.4

Overview

Field	Value
Gene ID	LotjaGi1g1v0364100
Transcript ID	LotjaGi1g1v0364100.4
Related isoforms 3	LotjaGi1g1v0364100.1 LotjaGi1g1v0364100.2 LotjaGi1g1v0364100.3
Lotus japonicus genome version	Gifu v1.2
Description	ERD (Early-responsive to dehydration stress) family protein; TAIR: AT1G58520.5 GDSL-like lipase/acylhydrolase superfamily protein; Swiss-Prot: sp\|F4IBD7\|CSCLA_ARATH CSC1-like protein RXW8; TrEMBL-Plants: tr\|A0A151TTH9\|A0A151TTH9_CAJCA Putative membrane protein YLR241W family; Found in the gene: LotjaGi1g1v0364100
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:83994932..83995739) extracted from Lotus japonicus Gifu genome v1.2.

ATGATTCAGCTGGTGACTGGTTACTTGCCAAGTGTGATTTTGGTTTTGTTTTTATTAGCTGTTCCACCATTGATGATGCT ATTTTCAGCGGTGGAGGGGCCTATTTCCCGTAGTGGAAGGAAAAGAAGTGCTTGCTGTAAAGTTTTGTTCTTCACAATTT GGAATGTGTTTTTCGTTAATGTTTTTGCCGGGTCTGTAATCAGCCAACTCTCAGTCTTTACTAATATAACAGAACTAACT GCCCAACTTGCCCAGGCAGTCCCGGTGCAGGTGAGATATCCAGATTCCTAGATGACAAATGTTGATTGTCAATTATGTAC CCCTTGTGAGGATATATACTTGTATCAAATATTTGAGCATTGTTGAACTAAACTTTTGTCCTCTTCAGTTTATAAATGTC AGATAAATTGGTTAATCTTTGTGATTAGTTATTCACTGTACTGTGGTTTTTTTTTCTCATGGCATACAGGCTGCCTTCTT CACAACATATGTTCTATCATCTGGTTGGGCAAGTTTGGCTTTTGAAATTATACAACCGTTTCCTCTTTTATGCAATTTGT TCCAGAGATTGGTCTTCTGTTCCCAGGAGGATTCATATAATGGCAACCTAACTTTTCCATACCATACAGAAGTTCCAAGG ATCTTGCTGTTTGGATTCCTTGGCTTCACCTGTTCTATTCTGGCACCCCTCATACTGCCCTTCTTATTGTTTTACTTTTC CCTTGCATACCTCGTTTACCGAAACCAGGTTAGTACTTCTATCATGTTTTTGTCTCCTTTTTCTCATGATGGAGTTAATT GCACTTAA

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0364100.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATTCAGCTGGTGACTGGTTACTTGCCAAGTGTGATTTTGGTTTTGTTTTTATTAGCTGTTCCACCATTGATGATGCT ATTTTCAGCGGTGGAGGGGCCTATTTCCCGTAGTGGAAGGAAAAGAAGTGCTTGCTGTAAAGTTTTGTTCTTCACAATTT GGAATGTGTTTTTCGTTAATGTTTTTGCCGGGTCTGTAATCAGCCAACTCTCAGTCTTTACTAATATAACAGAACTAACT GCCCAACTTGCCCAGGCAGTCCCGGTGCAGGCTGCCTTCTTCACAACATATGTTCTATCATCTGGTTGGGCAAGTTTGGC TTTTGAAATTATACAACCGTTTCCTCTTTTATGCAATTTGTTCCAGAGATTGGTCTTCTGTTCCCAGGAGGATTCATATA ATGGCAACCTAACTTTTCCATACCATACAGAAGTTCCAAGGATCTTGCTGTTTGGATTCCTTGGCTTCACCTGTTCTATT CTGGCACCCCTCATACTGCCCTTCTTATTGTTTTACTTTTCCCTTGCATACCTCGTTTACCGAAACCAGGTTAGTACTTC TATCATGTTTTTGTCTCCTTTTTCTCATGATGGAGTTAATTGCACTTAA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0364100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MIQLVTGYLPSVILVLFLLAVPPLMMLFSAVEGPISRSGRKRSACCKVLFFTIWNVFFVNVFAGSVISQLSVFTNITELT AQLAQAVPVQAAFFTTYVLSSGWASLAFEIIQPFPLLCNLFQRLVFCSQEDSYNGNLTFPYHTEVPRILLFGFLGFTCSI LAPLILPFLLFYFSLAYLVYRNQVSTSIMFLSPFSHDGVNCT

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1	5	5	-	–
Pfam	PF02714 View details on PF02714 Search for proteins/transripts with this domain View external data on PF02714	2	184	183	1.1E-45	IPR003864 Show description in modal box View details on IPR003864 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR13018 View details on PTHR13018 Search for proteins/transripts with this domain View external data on PTHR13018	3	184	182	1.2E-104	–
PANTHER	PTHR13018:SF101 View details on PTHR13018:SF101 Search for proteins/transripts with this domain View external data on PTHR13018:SF101	3	184	182	1.2E-104	–
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	6	28	23	-	–
TMHMM	TMhelix View details on TMhelix Search for proteins/transripts with this domain	7	29	23	-	–
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	29	47	19	-	–
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	48	67	20	-	–
TMHMM	TMhelix View details on TMhelix Search for proteins/transripts with this domain	51	73	23	-	–
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	68	147	80	-	–
TMHMM	TMhelix View details on TMhelix Search for proteins/transripts with this domain	86	108	23	-	–
TMHMM	TMhelix View details on TMhelix Search for proteins/transripts with this domain	148	179	32	-	–
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	148	180	33	-	–
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	181	202	22	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0016020 View details of GO:0016020 AmiGO InterPro QuickGO	Cellular component	Membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.	Subterm of View details of GO:0005575

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0364100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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