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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0365900 |
| Transcript ID | LotjaGi1g1v0365900.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CST complex subunit TEN1; TAIR: AT1G56260.1 telomere-capping, CST complex subunit; Swiss-Prot: sp|Q6NME7|TEN1_ARATH CST complex subunit TEN1; TrEMBL-Plants: tr|C6SVF8|C6SVF8_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0365900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:84381298..84385017) extracted from Lotus japonicus Gifu genome v1.2.
AATTGCGATTATACTATCAATTTATAATAGAAAAATGAAAATCTACATAAAATTAATCATTTCCATGAAAAGTTGCAAAT TTTTTTCTCACGAAAGGTATATAATACAGAAAACCCTTGAAAAACAGTGAAATTAAATTCAAATTGAAACAACCAGTTCC AATCGTTTGGGTGTTGATTCTTCTCCTTTCTCTTCCTGTACTCTGCCAAGGTACGTAAACTCCCACTCCAACCCTTTCAA TTTCGTTTATGCACTTCATGCTCCCTTCCTTTGTTTCCTTTTCAATAATGCTTTTTGGGTGGATTCTCTGTCTGTATGTC AAATCCCCTTTATTTCAGTTAATCTGAACAAGCAATCACACTGAATTAACATGTGAAAGCGAGGAGGGTACTCATTAGGT CAAACCCCAGCCTATATGTTTGTGTGTCTGGTACATTCAAGTATTTATGAAGATAGTGAAAAACAGTTAATTTCTGGTGC TTGTCAAACATGGTCAGGTTGATAATACCAAATATATAGCAAAAAAGTAAACAAAAATCTAATGACACAATGAATGCAGC TTTGGGTGGAGTAATTCAAATTTCAAAACACAGTTTCTCTGATGTTAGTGTTAGTTAACATGACTTGCAGTATTGTTGTG TAATTGCATACTAGTATAGTATTTCCTCTTCCCTCACCCCCCAAAACCTCTACAAAATCAACACTCAAGAAAATGAGTCA AGCTCCTTCAACAAATCCAATATTTGCCACTAATACCTTGCAGCAAGACAAGCATGTATCTTAGAGCCTAGTATATTTAA TGTGTCAGTTCTGTTTAGAGCCTAGTATAGTTGATGCTTCAGTTATTTTTAGAGAACATAATAGAATTGAAGAAAAAGAG GCAAAACTTGAGGAGAAAACAATACTCATTATAGCTTATAGCTTGTAACTTACAGTTTATCTTGGTTGTGGTTCTCTAAT CCCCACCCTTTACAAGATAAGTCACAGCCACTAGAATTTTAAAATCCTCTCATGGCTTTTGGCTAAATTTATTTGATTAA CACAGTATTATAGGAACATTTGATATAACAGAAATTATAATTTTTTGTTATTCGCCTATGGTTTTGATATGAAGAAGATA ATGCCTAATTAGAAGTCTTTAAAAATTAATGGTTTCTGCCCATTGCTCATTTGGAAATTTCTTGTCAAAAACTGTAATTT CTAAAACCAAACTTGGATAGACAACTGTGGTGAATAATTAATTGACTAGCGATTTGTTGCATCTGTGGACAGAAATCATT CATGTGTGAAGAAAATAATTTATTAAAGTAACGGTGTCATATATGTGGTACTATATTAGAGTTGAAGCTTTCTTAAGGTA GATGGTGTGCTACAAAATCTTTTGTACTATACTTACCATTAACATAAATTCACGCCTCATGAATTTGTATATTTTAAGTT TTCCCATATTGCAGGCAGAACTGGAACGGTGTCAAGTGAAGCCAGATGGCATTTTTTGAAGTAAAATCTGGTGCATTGGT TTCTTTACAAGACCTGCATCCGTCATCTCCTTTTTTCAAGCAAGGAGCTTCGATCAGAATAATTGGAAAGTGAGTGCTAT CATTTAATTCTAATTTACTCATGACTTTTTTGTTGGAAGTTTTGTGTTATAGTTTTGTTCTATCATTTGGGTTTTGTTGT CAATGATGACTAATGGATGTGTGCTGAACACATGAGGGATTTGGATTATGCATTTAGAGGACATCTAGCAACAGATGTCA TGTGGGTACCAGTAGTAGTGATATTGAGCTTAGAGGATTTATTGATGGCATGGCAGCAGGATGATCATGGCAGTTGGCAA CATTTGGTTTATGGTTTTGTCATGGATTATAGCAGGAACCGCAACGATGATGGCGGCATGATGGCAGTTTGGATACTGTA AAGTTAATGCCAGTCCTGCAGATAGGAGTCATATTGCAATTCTTAACTGCCTGTAGATTTTGACCAGCTAGGGAAAATTG GCATACTTAATATGTCTCAGATCTATATATTCCTTGATGGTAGCAATTTCAAAGTTGCTAAAAGTATCAATATATTGATT CATTTCGCAAAAGCATGTGATGCAGACATTAGTTGGAAACAAGTATCGATGCAAGAAACATGTTCTCTAATAGAAGATGG CAAATTTCCCTGCAAGTTCTTTTTTGGTAAAAAACCATCTCCAACTTTTGAATAGTAAAAAACAAGAACTCAATTAAACT CTCTTGTTAGTTTGGTGTTGGTTTTTCTAAGTTTTTAGTCTTTTCTGGTGCAGCAAGCCTGCAATGGACAGCATTAAACT GATAATATTGAGTCATTTGACACTATATTTTGTTGATGTGGCAGTCAATTGAATGACAAGGGAATTGCATCAATTTGAGA ACTATCTTCAACTAAAACTAGAGTACTTAACCATATAAGACATTTACTAGTGATTATAACAGTCCATGCATATTATAGTC ATGTCTAAGTGCATTATCTATTTATCTATATCTGTTCTATGTGTAGTAGACAGAGTATGATTGCATGGGATGGACGGTAT TGCTATGTTATATATCTTTTGATGTTGCTGTTGCCAATGATGATAGTGAAGTATCATTCAATAACCTATGTCAATCCTCA TGCAGGTTACGCGAATACTCTATAGAGACAGGACTGGCCATAGTTGTTGACGGTGATAGCATTCTAAAAGTTAGCACTGA GCATCTCAGGGACCTTACCTTTCAAGTTGGCTCTGTCTACCAATTCATCGGTGAACTCCTTATCCAACCTGATAATGAGG TATCTGCTTGTTTAAGTTTGTTTAAGGCCTTTCATCTGATATGCTTTACAAATTCATACACCCACAACATGTGCATCAGT GCATGTATAAAGATGTCAATGACATGATGATTGAGCAGTGTTCTTTGTTCCATGTTAGGGAGTTTTGCAGGCTCGTGTCG GTAGAAACGTTGATGGGATTGATCTCAATCTTTATCACCAATCCTTGCTGCTTTTGAAACAGTTTCAAGCCAATCATTTA AATAATCCAGCAACTTAACTTTGCAGGATTAATTTTGCACACAGAAGTCATCATACTAATTGAAAATTATATTTTCTGAT GCTATGAAAATGATGGAAGGTTGCTCCCCATAGCAGGATGTTGTCGCGTCAAGTAACTGAATGCCTAAACATTTTTATGT CCAGACATGATGTTCTGCAAATGTTCCACCACTCATTCAGAAATTTGGGGGTTGAATTTGCAAATGTTTGTTGACATGCA ATGAAGTGCAGATAACGAAACATTTCTATCTTTTAATGATGGAATATTTGTTGGTTTTCATGTCCAACTTCTCAGGTCAT ACTTAGTACTCGTTTGGATATAAACCAAAGCGCACTTTTGGAGTTTATTTATGTAATTTTTAGTAGATAAGCTCCAATAA GTTTGTATCCGAACTAATTTTTAAACCAAGGTATTAGAATAATATATACCCGTTACATTAATACTCCACTTGTCTAAACG TGAAACTAACGTCATTATGTTCGCCAAACTATATGGAGCCTACCTATCCCAAAATTCATATTAAATAATAGACTATGAAT CATAGAGCAAATGACAGTGCGAGAATTGTGGCTTTTGCATTGGACATAGTGGCTAGTGGGGTCTCGCGTCCAAATAACAT ATTTTCAAGGAATTGTTCTCTTTAGTTTTCTCATAAGAAG
CDS sequence (LotjaGi1g1v0365900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATTTTTTGAAGTAAAATCTGGTGCATTGGTTTCTTTACAAGACCTGCATCCGTCATCTCCTTTTTTCAAGCAAGG AGCTTCGATCAGAATAATTGGAAAGTTACGCGAATACTCTATAGAGACAGGACTGGCCATAGTTGTTGACGGTGATAGCA TTCTAAAAGTTAGCACTGAGCATCTCAGGGACCTTACCTTTCAAGTTGGCTCTGTCTACCAATTCATCGGTGAACTCCTT ATCCAACCTGATAATGAGGGAGTTTTGCAGGCTCGTGTCGGTAGAAACGTTGATGGGATTGATCTCAATCTTTATCACCA ATCCTTGCTGCTTTTGAAACAGTTTCAAGCCAATCATTTAAATAATCCAGCAACTTAA
Protein sequence (LotjaGi1g1v0365900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFFEVKSGALVSLQDLHPSSPFFKQGASIRIIGKLREYSIETGLAIVVDGDSILKVSTEHLRDLTFQVGSVYQFIGELL IQPDNEGVLQARVGRNVDGIDLNLYHQSLLLLKQFQANHLNNPAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 125 | 125 | 5.2E-80 | – | |
| Pfam | 7 | 118 | 112 | 5.2E-29 | ||
| Gene3D | 12 | 121 | 110 | 7.6E-22 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Single-stranded DNA binding | Interacting selectively and non-covalently with single-stranded DNA. | ||
| Cellular component | CST complex | A complex formed by the association of Cdc13 (CTC1 in mammals) with Stn1 in yeast (OBFC1 in mammals) and Ten1 protein (also TEN1 in mammals) with single-stranded telomeric DNA. The CST complex plays a role in telomere protection. |
Expression pattern of LotjaGi1g1v0365900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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