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GO:0003697

Overview

Field Value
Namespace Molecular function
Short description Single-stranded DNA binding
Full defintion Interacting selectively and non-covalently with single-stranded DNA.
Subterm of

Relationships

The relationship of GO:0003697 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCvw
PMID
Functions of single-strand DNA-binding proteins in DNA replication, recombination, and repair.
Methods Mol Biol. ; 922 (): 1–21.PMID: 22976174

Double-stranded (ds) DNA contains all of the necessary genetic information, although practical use of this information requires unwinding of the duplex DNA. DNA unwinding creates single-stranded (ss) DNA intermediates that serve as templates for myriad cellular functions. Exposure of ssDNA presents several problems to the cell. First, ssDNA is thermodynamically less stable than dsDNA, which leads to spontaneous formation of duplex secondary structures that impede genome maintenance processes. Second, relative to dsDNA, ssDNA is hypersensitive to chemical and nucleolytic attacks that can cause damage to the genome. Cells deal with these potential problems by encoding specialized ssDNA-binding proteins (SSBs) that bind to and stabilize ssDNA structures required for essential genomic processes. SSBs are essential proteins found in all domains of life. SSBs bind ssDNA with high affinity and in a sequence-independent manner and, in doing so, SSBs help to form the central nucleoprotein complex substrate for DNA replication, recombination, and repair processes. While SSBs are found in every organism, the proteins themselves share surprisingly little sequence similarity, subunit composition, and oligomerization states. All SSB proteins contain at least one DNA-binding oligonucleotide/oligosaccharide binding (OB) fold, which consists minimally of a five stranded beta-sheet arranged as a beta barrel capped by a single alpha helix. The OB fold is responsible for both ssDNA binding and oligomerization (for SSBs that operate as oligomers). The overall organization of OB folds varies between bacteria, eukaryotes, and archaea. As part of SSB/ssDNA cellular structures, SSBs play direct roles in the DNA replication, recombination, and repair. In many cases, SSBs have been found to form specific complexes with diverse genome maintenance proteins, often helping to recruit SSB/ssDNA-processing enzymes to the proper cellular sites of action. This clustering of genome maintenance factors can help to stimulate and coordinate the activities of individual enzymes and is also important for dislodging SSB from ssDNA. These features support a model in which DNA metabolic processes have evolved to work on ssDNA/SSB nucleoprotein filaments rather than on naked ssDNA. In this volume, methods are described to interrogate SSB-DNA and SSB-protein binding functions along with approaches that aim to understand the cellular functions of SSB. This introductory chapter offers a general overview of SSBs that focuses on their structures, DNA-binding mechanisms, and protein-binding partners.

Associated Lotus transcripts 54

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
PREDICTED: protein OSB2, chloroplastic-like [Cicer arietinum] gi|502115197|ref|XP_004495147.1| 2
PREDICTED: protein OSB1, mitochondrial-like [Glycine max] gi|356553917|ref|XP_003545297.1| 2
PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like isoform X1 [Cicer arietinum] gi|502093648|ref|XP_004490008.1| 3
PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like isoform X1 [Cicer arietinum] gi|502093648|ref|XP_004490008.1| 3
PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like [Cicer arietinum] gi|502170191|ref|XP_004514779.1| 3
PREDICTED: CST complex subunit TEN1-like [Cicer arietinum] gi|502113192|ref|XP_004494570.1| 2
PREDICTED: DNA repair protein recA homolog 2, mitochondrial-like isoform X1 [Cicer arietinum] gi|502108338|ref|XP_004493447.1| 3
PREDICTED: DNA repair protein recA homolog 2, mitochondrial-like isoform X1 [Cicer arietinum] gi|502108338|ref|XP_004493447.1| 3
PREDICTED: translin-like [Cicer arietinum] gi|502111191|ref|XP_004493980.1| 3
PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial-like [Cicer arietinum] gi|502113776|ref|XP_004494755.1| 3
PREDICTED: protein OSB2, chloroplastic-like [Cicer arietinum] gi|502164271|ref|XP_004513105.1| 2
PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like [Glycine max] gi|356556644|ref|XP_003546633.1| 3
PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like [Solanum lycopersicum] gi|460396872|ref|XP_004243994.1| 3
PREDICTED: single-stranded DNA-binding protein, mitochondrial-like [Cicer arietinum] gi|502122587|ref|XP_004497818.1| 2
PREDICTED: DNA repair protein recA homolog 3, mitochondrial-like isoform X4 [Cicer arietinum] gi|502150423|ref|XP_004507946.1| 3
PREDICTED: DNA repair protein recA homolog 3, mitochondrial-like [Glycine max] gi|356561937|ref|XP_003549233.1| 3
PREDICTED: DNA repair protein RAD51 homolog 1-like [Cicer arietinum] gi|502150634|ref|XP_004508049.1| 6
PREDICTED: protein OSB2, chloroplastic-like [Cicer arietinum] gi|502164271|ref|XP_004513105.1| 2
PREDICTED: protein OSB2, chloroplastic-like [Cicer arietinum] gi|502115197|ref|XP_004495147.1| 2
RecA [Medicago truncatula] gi|357449857|ref|XP_003595205.1| 3
CST complex subunit TEN1; TAIR: AT1G56260.1 telomere-capping, CST complex subunit; Swiss-Prot: sp|Q6NME7|TEN1_ARATH CST complex subunit TEN1; TrEMBL-Plants: tr|C6SVF8|C6SVF8_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0365900 2
CST complex subunit TEN1; TAIR: AT1G56260.1 telomere-capping, CST complex subunit; Swiss-Prot: sp|Q6NME7|TEN1_ARATH CST complex subunit TEN1; TrEMBL-Plants: tr|C6SVF8|C6SVF8_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0365900 2
CST complex subunit TEN1; TAIR: AT1G56260.1 telomere-capping, CST complex subunit; Swiss-Prot: sp|Q6NME7|TEN1_ARATH CST complex subunit TEN1; TrEMBL-Plants: tr|C6SVF8|C6SVF8_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0365900 2
Protein MCM10 like; TAIR: AT2G20980.1 minichromosome maintenance 10; Swiss-Prot: sp|Q0VBD2|MCM10_MOUSE Protein MCM10 homolog; TrEMBL-Plants: tr|A0A151RNG8|A0A151RNG8_CAJCA Protein MCM10 isogeny; Found in the gene: LotjaGi1g1v0559000 3
Flap endonuclease 1; TAIR: AT3G28030.1 5'-3' exonuclease family protein; Swiss-Prot: sp|Q9ATY5|UVH3_ARATH DNA repair protein UVH3; TrEMBL-Plants: tr|K7K2I9|K7K2I9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0605700 4
Flap endonuclease 1; TAIR: AT3G28030.1 5'-3' exonuclease family protein; Swiss-Prot: sp|Q9ATY5|UVH3_ARATH DNA repair protein UVH3; TrEMBL-Plants: tr|K7K2I9|K7K2I9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0605700 4
RecA; TAIR: AT3G10140.1 RECA homolog 3; Swiss-Prot: sp|Q8RY99|RECAM_ARATH DNA repair protein recA homolog 2, mitochondrial; TrEMBL-Plants: tr|G7KSL4|G7KSL4_MEDTR DNA repair protein RecA, putative; Found in the gene: LotjaGi1g1v0669500 3
RecA; TAIR: AT3G10140.1 RECA homolog 3; Swiss-Prot: sp|Q8RY99|RECAM_ARATH DNA repair protein recA homolog 2, mitochondrial; TrEMBL-Plants: tr|G7KSL4|G7KSL4_MEDTR DNA repair protein RecA, putative; Found in the gene: LotjaGi1g1v0669500 3
Translin; TAIR: AT2G37020.1 Translin family protein; Swiss-Prot: sp|P79769|TSN_CHICK Translin; TrEMBL-Plants: tr|I3SZY3|I3SZY3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0689500 3
Single-stranded DNA-binding protein WHY3; TAIR: AT1G71260.1 WHIRLY 2; Swiss-Prot: sp|Q8VYF7|WHY2_ARATH Single-stranded DNA-binding protein WHY2, mitochondrial; TrEMBL-Plants: tr|I3SAE2|I3SAE2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0786600 3
Protein OSB3, chloroplastic/mitochondrial; TAIR: AT5G44785.2 organellar single-stranded DNA binding protein 3; Swiss-Prot: sp|Q8GWJ4|OSB3_ARATH Protein OSB3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0L9VGU0|A0A0L9VGU0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0233700 2
Single-stranded DNA-binding protein WHY1, chloroplastic; TAIR: AT1G14410.1 ssDNA-binding transcriptional regulator; Swiss-Prot: sp|Q9M9S3|WHY1_ARATH Single-stranded DNA-binding protein WHY1, chloroplastic; TrEMBL-Plants: tr|A0A0L9TLQ1|A0A0L9TLQ1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0307700 3
Single-stranded DNA-binding protein WHY1, chloroplastic; TAIR: AT1G14410.1 ssDNA-binding transcriptional regulator; Swiss-Prot: sp|Q9M9S3|WHY1_ARATH Single-stranded DNA-binding protein WHY1, chloroplastic; TrEMBL-Plants: tr|A0A0L9TLQ1|A0A0L9TLQ1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0307700 3
Single-stranded DNA-binding protein WHY1, chloroplastic; TAIR: AT1G14410.1 ssDNA-binding transcriptional regulator; Swiss-Prot: sp|Q9M9S3|WHY1_ARATH Single-stranded DNA-binding protein WHY1, chloroplastic; TrEMBL-Plants: tr|A0A0L9TLQ1|A0A0L9TLQ1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0307700 3
NDX1 homeobox protein; TAIR: AT4G03090.2 sequence-specific DNA binding transcription factor ATNDX; Swiss-Prot: sp|F4JI44|NDX_ARATH Nodulin homeobox; TrEMBL-Plants: tr|Q9ZRY4|Q9ZRY4_LOTJA NDX1 homeobox protein; Found in the gene: LotjaGi2g1v0368500 2
NDX1 homeobox protein; TAIR: AT4G03090.2 sequence-specific DNA binding transcription factor ATNDX; Swiss-Prot: sp|F4JI44|NDX_ARATH Nodulin homeobox; TrEMBL-Plants: tr|Q9ZRY4|Q9ZRY4_LOTJA NDX1 homeobox protein; Found in the gene: LotjaGi2g1v0368500 2
Protein recA; TAIR: AT1G79050.1 recA DNA recombination family protein; Swiss-Prot: sp|Q39199|RECAC_ARATH DNA repair protein recA homolog 1, chloroplastic; TrEMBL-Plants: tr|V7AKD7|V7AKD7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0037500 3
Protein recA; TAIR: AT1G79050.1 recA DNA recombination family protein; Swiss-Prot: sp|Q39199|RECAC_ARATH DNA repair protein recA homolog 1, chloroplastic; TrEMBL-Plants: tr|A0A0R0G3Y7|A0A0R0G3Y7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0037500 3
NDX1 homeobox protein; TAIR: AT4G03090.5 sequence-specific DNA binding transcription factor ATNDX; Swiss-Prot: sp|F4JI44|NDX_ARATH Nodulin homeobox; TrEMBL-Plants: tr|Q9ZRY3|Q9ZRY3_LOTJA NDX2 homeobox protein; Found in the gene: LotjaGi3g1v0279500 2
Single-stranded dna-binding protein why1, chloroplastic; TAIR: AT1G14410.1 ssDNA-binding transcriptional regulator; Swiss-Prot: sp|Q9M9S3|WHY1_ARATH Single-stranded DNA-binding protein WHY1, chloroplastic; TrEMBL-Plants: tr|I3SQW0|I3SQW0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0187200 3
Single-stranded DNA-binding protein; TAIR: AT3G18580.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|Q84J78|SSBP_ARATH Single-stranded DNA-binding protein, mitochondrial; TrEMBL-Plants: tr|V7CAJ9|V7CAJ9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0262500 2
RecA family protein; TAIR: AT2G19490.1 recA DNA recombination family protein; Swiss-Prot: sp|Q9ZUP2|RECA3_ARATH DNA repair protein recA homolog 3, mitochondrial; TrEMBL-Plants: tr|A0A151SS31|A0A151SS31_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0310500 3
RecA family protein; TAIR: AT2G19490.1 recA DNA recombination family protein; Swiss-Prot: sp|Q9ZUP2|RECA3_ARATH DNA repair protein recA homolog 3, mitochondrial; TrEMBL-Plants: tr|A0A151SS31|A0A151SS31_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0310500 3
RecA family protein; TAIR: AT2G19490.1 recA DNA recombination family protein; Swiss-Prot: sp|Q9ZUP2|RECA3_ARATH DNA repair protein recA homolog 3, mitochondrial; TrEMBL-Plants: tr|A0A072V2Z1|A0A072V2Z1_MEDTR DNA repair protein RecA, putative; Found in the gene: LotjaGi4g1v0310500 3
DNA repair protein RAD51 like 1; TAIR: AT5G20850.1 RAS associated with diabetes protein 51; Swiss-Prot: sp|P94102|RAD51_ARATH DNA repair protein RAD51 homolog 1; TrEMBL-Plants: tr|A0A151SSM0|A0A151SSM0_CAJCA DNA repair protein RAD51 isogeny 1; Found in the gene: LotjaGi4g1v0319500 6
Protein OSB1, mitochondrial; TAIR: AT1G47720.1 Primosome PriB/single-strand DNA-binding protein; Swiss-Prot: sp|Q9SX99|OSB1_ARATH Protein OSB1, mitochondrial; TrEMBL-Plants: tr|A0A151RMN9|A0A151RMN9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0023300 2
Protein OSB1, mitochondrial; TAIR: AT1G47720.1 Primosome PriB/single-strand DNA-binding protein; Swiss-Prot: sp|Q9SX99|OSB1_ARATH Protein OSB1, mitochondrial; TrEMBL-Plants: tr|A0A151RMN9|A0A151RMN9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0023300 2
Single-stranded DNA-binding protein; TAIR: AT4G20010.2 plastid transcriptionally active 9; Swiss-Prot: sp|Q8GXH3|OSB2_ARATH Protein OSB2, chloroplastic; TrEMBL-Plants: tr|A0A0R0KWQ4|A0A0R0KWQ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0174600 2
Single-stranded DNA-binding protein; TAIR: AT1G47720.1 Primosome PriB/single-strand DNA-binding protein; Swiss-Prot: sp|Q9SX99|OSB1_ARATH Protein OSB1, mitochondrial; TrEMBL-Plants: tr|I1JF51|I1JF51_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0174600 2
Single-stranded DNA-binding protein; TAIR: AT4G11060.1 mitochondrially targeted single-stranded DNA binding protein; Swiss-Prot: sp|Q84J78|SSBP_ARATH Single-stranded DNA-binding protein, mitochondrial; TrEMBL-Plants: tr|I3SK50|I3SK50_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0227500 2
DNA-directed RNA polymerase III subunit RPC3; TAIR: AT3G49000.1 RNA polymerase III subunit RPC82 family protein; Swiss-Prot: sp|Q9BUI4|RPC3_HUMAN DNA-directed RNA polymerase III subunit RPC3; TrEMBL-Plants: tr|V7BC56|V7BC56_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0300000 2
RecA family protein; TAIR: AT2G19490.1 recA DNA recombination family protein; Swiss-Prot: sp|Q9ZUP2|RECA3_ARATH DNA repair protein recA homolog 3, mitochondrial; TrEMBL-Plants: tr|G7IIL3|G7IIL3_MEDTR DNA repair and recombination protein; Found in the gene: LotjaGi6g1v0230700 3
RecA family protein; TAIR: AT2G19490.1 recA DNA recombination family protein; Swiss-Prot: sp|Q9ZUP2|RECA3_ARATH DNA repair protein recA homolog 3, mitochondrial; TrEMBL-Plants: tr|G7IIL3|G7IIL3_MEDTR DNA repair and recombination protein; Found in the gene: LotjaGi6g1v0230700 3
RecA family protein; TAIR: AT2G19490.1 recA DNA recombination family protein; Swiss-Prot: sp|Q9ZUP2|RECA3_ARATH DNA repair protein recA homolog 3, mitochondrial; TrEMBL-Plants: tr|G7IIL3|G7IIL3_MEDTR DNA repair and recombination protein; Found in the gene: LotjaGi6g1v0230700 3

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
Biological process DNA repair 1 1.85