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LotjaGi1g1v0365900.2

Overview

Field Value
Gene ID LotjaGi1g1v0365900
Transcript ID LotjaGi1g1v0365900.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description CST complex subunit TEN1; TAIR: AT1G56260.1 telomere-capping, CST complex subunit; Swiss-Prot: sp|Q6NME7|TEN1_ARATH CST complex subunit TEN1; TrEMBL-Plants: tr|C6SVF8|C6SVF8_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0365900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:84381549..84384858) extracted from Lotus japonicus Gifu genome v1.2.

CAATCGTTTGGGTGTTGATTCTTCTCCTTTCTCTTCCTGTACTCTGCCAAGGTACGTAAACTCCCACTCCAACCCTTTCA ATTTCGTTTATGCACTTCATGCTCCCTTCCTTTGTTTCCTTTTCAATAATGCTTTTTGGGTGGATTCTCTGTCTGTATGT CAAATCCCCTTTATTTCAGTTAATCTGAACAAGCAATCACACTGAATTAACATGTGAAAGCGAGGAGGGTACTCATTAGG TCAAACCCCAGCCTATATGTTTGTGTGTCTGGTACATTCAAGTATTTATGAAGATAGTGAAAAACAGTTAATTTCTGGTG CTTGTCAAACATGGTCAGGTTGATAATACCAAATATATAGCAAAAAAGTAAACAAAAATCTAATGACACAATGAATGCAG CTTTGGGTGGAGTAATTCAAATTTCAAAACACAGTTTCTCTGATGTTAGTGTTAGTTAACATGACTTGCAGTATTGTTGT GTAATTGCATACTAGTATAGTATTTCCTCTTCCCTCACCCCCCAAAACCTCTACAAAATCAACACTCAAGAAAATGAGTC AAGCTCCTTCAACAAATCCAATATTTGCCACTAATACCTTGCAGCAAGACAAGCATGTATCTTAGAGCCTAGTATATTTA ATGTGTCAGTTCTGTTTAGAGCCTAGTATAGTTGATGCTTCAGTTATTTTTAGAGAACATAATAGAATTGAAGAAAAAGA GGCAAAACTTGAGGAGAAAACAATACTCATTATAGCTTATAGCTTGTAACTTACAGTTTATCTTGGTTGTGGTTCTCTAA TCCCCACCCTTTACAAGATAAGTCACAGCCACTAGAATTTTAAAATCCTCTCATGGCTTTTGGCTAAATTTATTTGATTA ACACAGTATTATAGGAACATTTGATATAACAGAAATTATAATTTTTTGTTATTCGCCTATGGTTTTGATATGAAGAAGAT AATGCCTAATTAGAAGTCTTTAAAAATTAATGGTTTCTGCCCATTGCTCATTTGGAAATTTCTTGTCAAAAACTGTAATT TCTAAAACCAAACTTGGATAGACAACTGTGGTGAATAATTAATTGACTAGCGATTTGTTGCATCTGTGGACAGAAATCAT TCATGTGTGAAGAAAATAATTTATTAAAGTAACGGTGTCATATATGTGGTACTATATTAGAGTTGAAGCTTTCTTAAGGT AGATGGTGTGCTACAAAATCTTTTGTACTATACTTACCATTAACATAAATTCACGCCTCATGAATTTGTATATTTTAAGT TTTCCCATATTGCAGGCAGAACTGGAACGGTGTCAAGTGAAGCCAGATGGCATTTTTTGAAGTAAAATCTGGTGCATTGG TTTCTTTACAAGACCTGCATCCGTCATCTCCTTTTTTCAAGCAAGGAGCTTCGATCAGAATAATTGGAAAGTGAGTGCTA TCATTTAATTCTAATTTACTCATGACTTTTTTGTTGGAAGTTTTGTGTTATAGTTTTGTTCTATCATTTGGGTTTTGTTG TCAATGATGACTAATGGATGTGTGCTGAACACATGAGGGATTTGGATTATGCATTTAGAGGACATCTAGCAACAGATGTC ATGTGGGTACCAGTAGTAGTGATATTGAGCTTAGAGGATTTATTGATGGCATGGCAGCAGGATGATCATGGCAGTTGGCA ACATTTGGTTTATGGTTTTGTCATGGATTATAGCAGGAACCGCAACGATGATGGCGGCATGATGGCAGTTTGGATACTGT AAAGTTAATGCCAGTCCTGCAGATAGGAGTCATATTGCAATTCTTAACTGCCTGTAGATTTTGACCAGCTAGGGAAAATT GGCATACTTAATATGTCTCAGATCTATATATTCCTTGATGGTAGCAATTTCAAAGTTGCTAAAAGTATCAATATATTGAT TCATTTCGCAAAAGCATGTGATGCAGACATTAGTTGGAAACAAGTATCGATGCAAGAAACATGTTCTCTAATAGAAGATG GCAAATTTCCCTGCAAGTTCTTTTTTGGTAAAAAACCATCTCCAACTTTTGAATAGTAAAAAACAAGAACTCAATTAAAC TCTCTTGTTAGTTTGGTGTTGGTTTTTCTAAGTTTTTAGTCTTTTCTGGTGCAGCAAGCCTGCAATGGACAGCATTAAAC TGATAATATTGAGTCATTTGACACTATATTTTGTTGATGTGGCAGTCAATTGAATGACAAGGGAATTGCATCAATTTGAG AACTATCTTCAACTAAAACTAGAGTACTTAACCATATAAGACATTTACTAGTGATTATAACAGTCCATGCATATTATAGT CATGTCTAAGTGCATTATCTATTTATCTATATCTGTTCTATGTGTAGTAGACAGAGTATGATTGCATGGGATGGACGGTA TTGCTATGTTATATATCTTTTGATGTTGCTGTTGCCAATGATGATAGTGAAGTATCATTCAATAACCTATGTCAATCCTC ATGCAGGTTACGCGAATACTCTATAGAGACAGGACTGGCCATAGTTGTTGACGGTGATAGCATTCTAAAAGTTAGCACTG AGCATCTCAGGGACCTTACCTTTCAAGTTGGCTCTGTCTACCAATTCATCGGTGAACTCCTTATCCAACCTGATAATGAG GTATCTGCTTGTTTAAGTTTGTTTAAGGCCTTTCATCTGATATGCTTTACAAATTCATACACCCACAACATGTGCATCAG TGCATGTATAAAGATGTCAATGACATGATGATTGAGCAGTGTTCTTTGTTCCATGTTAGGGAGTTTTGCAGGCTCGTGTC GGTAGAAACGTTGATGGGATTGATCTCAATCTTTATCACCAATCCTTGCTGCTTTTGAAACAGTTTCAAGCCAATCATTT AAATAATCCAGCAACTTAACTTTGCAGGATTAATTTTGCACACAGAAGTCATCATACTAATTGAAAATTATATTTTCTGA TGCTATGAAAATGATGGAAGGTTGCTCCCCATAGCAGGATGTTGTCGCGTCAAGTAACTGAATGCCTAAACATTTTTATG TCCAGACATGATGTTCTGCAAATGTTCCACCACTCATTCAGAAATTTGGGGGTTGAATTTGCAAATGTTTGTTGACATGC AATGAAGTGCAGATAACGAAACATTTCTATCTTTTAATGATGGAATATTTGTTGGTTTTCATGTCCAACTTCTCAGGTCA TACTTAGTACTCGTTTGGATATAAACCAAAGCGCACTTTTGGAGTTTATTTATGTAATTTTTAGTAGATAAGCTCCAATA AGTTTGTATCCGAACTAATTTTTAAACCAA 

CDS sequence (LotjaGi1g1v0365900.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCATTTTTTGAAGTAAAATCTGGTGCATTGGTTTCTTTACAAGACCTGCATCCGTCATCTCCTTTTTTCAAGCAAGG AGCTTCGATCAGAATAATTGGAAAGTTACGCGAATACTCTATAGAGACAGGACTGGCCATAGTTGTTGACGGTGATAGCA TTCTAAAAGTTAGCACTGAGCATCTCAGGGACCTTACCTTTCAAGTTGGCTCTGTCTACCAATTCATCGGTGAACTCCTT ATCCAACCTGATAATGAGGGAGTTTTGCAGGCTCGTGTCGGTAGAAACGTTGATGGGATTGATCTCAATCTTTATCACCA ATCCTTGCTGCTTTTGAAACAGTTTCAAGCCAATCATTTAAATAATCCAGCAACTTAA 

Protein sequence (LotjaGi1g1v0365900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAFFEVKSGALVSLQDLHPSSPFFKQGASIRIIGKLREYSIETGLAIVVDGDSILKVSTEHLRDLTFQVGSVYQFIGELL IQPDNEGVLQARVGRNVDGIDLNLYHQSLLLLKQFQANHLNNPAT 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 125 125 5.2E-80
Pfam 7 118 112 5.2E-29
Gene3D 12 121 110 7.6E-22

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Single-stranded DNA binding Interacting selectively and non-covalently with single-stranded DNA.
Cellular component CST complex A complex formed by the association of Cdc13 (CTC1 in mammals) with Stn1 in yeast (OBFC1 in mammals) and Ten1 protein (also TEN1 in mammals) with single-stranded telomeric DNA. The CST complex plays a role in telomere protection.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0365900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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