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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0366100 |
| Transcript ID | LotjaGi1g1v0366100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BRISC and BRCA1-A complex member 1; TAIR: AT4G32960.1 BRISC/BRCA1-A complex protein; Swiss-Prot: sp|Q6DJG6|BABA1_XENLA BRISC and BRCA1-A complex member 1; TrEMBL-Plants: tr|I3SNG0|I3SNG0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0366100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:84391744..84393793) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTTTTGATGAGAGGATCCCGGGAAAATCATCACACATAACATAATCCATCATTATTTTGCATTTATTAGTCCATTAA TTAGGGCCTTGTCTGAAGGTAGAAAAGGAACCAAGTAACTGAAGGAGGCACACGGTGTTCTTCAATCAATCAAGAATCGA AGAAGAAATCAGAGAAATATAAATGGAAGAAGGAGACAGGAGGAGCAGGGAAGAAGGAAGCAGCAGGTACACTCTGCAAC CCTCACGAATCTGCAACGAAGACATTCTCTTCTGCATCGACATCGATCCTCAATCTCTCGTCGAGATGAAAACCGCCACC GGACACAACGGCAGACCCCTCACCCGCTTGGACTCCATCAAGCAATCCATCCTTCTCTTCGTCCATTCCAAGCTCACCAT CAACCCCGATCACCGCTTCGCTTTCGCCACTCTCTCCAACACCGTCTCATGGGTACATTCATGTGTTTGTTGCATTAAGA CATGTTTTTTTTAGGGTTTTTGATTTGACCCATGATGTGGTTTTTTTACTTTAATTCTTACAGCTGAAGAAAGATTTTAG CAGTGATGTTGAATCAACAATGGCAGCAATGAGGGGTCTTTCAGCTACCAATATCAGTACCCAACCAGACCTCACCAATT TGTTCAGACTTGCTGCTCATGAAGCTAAGAAATCGCGTGCCCAAGGTCGCATTTTAAGAGTGGTAAGTAAGTGGTGCTCA CATTTCTTGTTTAGTATGCATAGATAGAAAATCATTCAAATTGTTATCGTTTGTACTTGGTAGGAATAGGAAGTATTCTA GCATGTTTGTTTGACTGAGATTCTGTTTGATCAACCAATTCGGATATCGCGCAAAGATTTCCGGTTTAGAATCCGTTGTT GAAGGATTTCCAAACATGCACTGAATTTAAGATATATTGGTTCACTAATAGTTCATAATTAAACATCCATTTCCACCTCC ACCTAGTGTGAGAAAGGAATAAAAAAGAGAGAAGTAGAGATATGATTGGTTATCTTTCACATTTCTTGTTTACCATAGCA TAGAACAGAAAATCATTTCAATTAAAGAGATATGATTGGTAACTATCTTCAATTTGTCATTCCCTGTTTGTTATTTTTTT TATTTTCTATGTGAGGGTCCTTCTTAATTTTTTTTACTCGTCTTATTGCTGTTTTCTTCCCAGCTGATATTTATCAATTT TCATTGAATAATATTATATGATGCTTTATCTACACACACACACACACAATTTTCCTCTTAATTTTTCTTAGTAGTCTTAA TTTTGTTGTTGTTGTTGTTGTACACCATACTGTTAGTTGTTGGTCAGCCAGGTATTTGAATCCTAATATGCAATTTCCTA CTCCTTTGTAGATTCTATTCTATTGCAGATCAAATGTGCGCCCACAGCATCAGTGGCCTGTGAACCAGAAGCTCTACACT CTGGATGTCATGTACCTTCATGACAAGCCTGGACCTGAGAATTGCCCTCAGGAGGTCTATGATACACTGGTGGAGGCTCT TGAACATGTTAGTGAGTATGAGGGCTATATCTTGGAGAGTGGACAGGGGTTAGCGCGTGTTGTTTTCCGTCACGTGTTAA TACTGCTGTCACATCCTCAGCAGCGCTGCATTCAAGAGAACATTGACATCCCGAAGTCACTTGCAAAGAAGGCTCCTCAG GGGGAGCCAATGGCTACTGAAGAGAATGCTCCTGTTTCCACCCAATGAGAAGTATGTCATTGCATGATAAGTTTTAGTTC TCTCATGTTATGTAGGTTGTTGGTTTCATTTGTGTGGCTTATATTGTAAAAAGATGTTGATCTTACAAGCAGTATCTTGC ATTGTATGCCCTGATAATTTTCTGTAAATCATGCATATCTGTATTTTGTTTGAAAATTTTAAATGGATTTTCAATTTGTC AGATCACTGGTGCTTAGTTTTTTCCCGAAGTTGTTACACATTTTCCATTTAGCAGACTCTCCCTGCTACGCTGACTTAAA ATTCCTCTCCAGGGGAGATGCAAATTTTCTCCTTTTTCCTTAGATCAAAT
CDS sequence (LotjaGi1g1v0366100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAAGGAGACAGGAGGAGCAGGGAAGAAGGAAGCAGCAGGTACACTCTGCAACCCTCACGAATCTGCAACGAAGA CATTCTCTTCTGCATCGACATCGATCCTCAATCTCTCGTCGAGATGAAAACCGCCACCGGACACAACGGCAGACCCCTCA CCCGCTTGGACTCCATCAAGCAATCCATCCTTCTCTTCGTCCATTCCAAGCTCACCATCAACCCCGATCACCGCTTCGCT TTCGCCACTCTCTCCAACACCGTCTCATGGCTGAAGAAAGATTTTAGCAGTGATGTTGAATCAACAATGGCAGCAATGAG GGGTCTTTCAGCTACCAATATCAGTACCCAACCAGACCTCACCAATTTGTTCAGACTTGCTGCTCATGAAGCTAAGAAAT CGCGTGCCCAAGGTCGCATTTTAAGAGTGATTCTATTCTATTGCAGATCAAATGTGCGCCCACAGCATCAGTGGCCTGTG AACCAGAAGCTCTACACTCTGGATGTCATGTACCTTCATGACAAGCCTGGACCTGAGAATTGCCCTCAGGAGGTCTATGA TACACTGGTGGAGGCTCTTGAACATGTTAGTGAGTATGAGGGCTATATCTTGGAGAGTGGACAGGGGTTAGCGCGTGTTG TTTTCCGTCACGTGTTAATACTGCTGTCACATCCTCAGCAGCGCTGCATTCAAGAGAACATTGACATCCCGAAGTCACTT GCAAAGAAGGCTCCTCAGGGGGAGCCAATGGCTACTGAAGAGAATGCTCCTGTTTCCACCCAATGA
Protein sequence (LotjaGi1g1v0366100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEGDRRSREEGSSRYTLQPSRICNEDILFCIDIDPQSLVEMKTATGHNGRPLTRLDSIKQSILLFVHSKLTINPDHRFA FATLSNTVSWLKKDFSSDVESTMAAMRGLSATNISTQPDLTNLFRLAAHEAKKSRAQGRILRVILFYCRSNVRPQHQWPV NQKLYTLDVMYLHDKPGPENCPQEVYDTLVEALEHVSEYEGYILESGQGLARVVFRHVLILLSHPQQRCIQENIDIPKSL AKKAPQGEPMATEENAPVSTQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 261 | 259 | 4.9E-113 | ||
| SUPERFAMILY | 28 | 148 | 121 | 1.33E-5 | ||
| Gene3D | 45 | 156 | 112 | 1.7E-6 | ||
| MobiDBLite | 241 | 261 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Positive regulation of DNA repair | Any process that activates or increases the frequency, rate or extent of DNA repair. | ||
| Cellular component | BRCA1-A complex | A protein complex that contains the BRCA1-BARD1 heterodimer, RAP80/UIMC1, BRCC3/BRCC36, BRE/BRCC45, FAM175A/CCDC98/Abraxas and MERIT40/NBA1, and specifically recognizes and binds K63-linked polyubiquitin chains present on histone H2A and H2AX at DNA damage sites. | ||
| Cellular component | BRISC complex | A protein complex that contains the FAM175B/ABRO1, BRCC3/BRCC36, BRE/BRCC45 and MERIT40/NBA1 proteins, and specifically cleaves K63-linked polyubiquitin chains. |
Expression pattern of LotjaGi1g1v0366100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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