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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0366600 |
| Transcript ID | LotjaGi1g1v0366600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pollen-specific protein SF21; TAIR: AT5G56750.1 N-MYC downregulated-like 1; Swiss-Prot: sp|O23969|SF21_HELAN Pollen-specific protein SF21; TrEMBL-Plants: tr|C6T7K8|C6T7K8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0366600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:84435578..84437800) extracted from Lotus japonicus Gifu genome v1.2.
ATGTGTCCTGCTTTCAGGGGCTATTGTTTTGTCCGGAAATTGGTTCATTGCTGCTCCACAATTTCTGCATATATCAAATT AGTCCACCTGGGCATCAGGTCAGCTTTATTTTTTGAAGCTATAATATATGGTGTTACTTGATACTTAGCTTACCACATTT TGTAAATGTTTTTGTTTTTGGATGTTACAATTTGTCTGGTTCCTTATCATCTTCTACTTTCTTCAAGAGCTATTACAGTT AGGAGCCGGTGCAATTGATCCAGATGATCCACTTCTCTCTGCTGATGACTTAGCTGATCAATTAGCTGAAGTACTCAACT TTTTTGGGTGAGCATGTCATAGCTTAATCATCAATCTCTTTCCATGTAGACTATTATAGAAAGTTTTAGAAATAATGCAA TGGAATGGATCAGATTTTCCTTCCTAAAATTTGATGAATAACTAGCCAGGGAGAATATGAGAAGGTAAAAGATTGTATGG CTAAAATTTCAATAGAATATTTATATACACTTTTTTCAAGTAATTGTGAGAAACTTGTGCATCTAATATCATGTTTGCGT CAACCTATTTTTTCCTCAGAATCAATTATAACACCGTGATTGCTCACATAAGCTTCTTCTCAAAATTAATTTGGCGTTAG AACCAATCGCAGAAGGATTTCCAAACATGTTATAAGGCTAGAAGCTATTGTCTCCCTTCCTTGGTCTGGATTCTGGACAT TCTGACACCATTTCTCTCTTAACTCTTTGCAGTCTTAGTGCAGTCATGTGTATGGGAGTAACGGCTGGAGCTTACATTCT TACCTTATTTGCTGTGAGTGACGTACAATACATGTTGCAACCACCTCTCTCATTTTTCACATTCTTAAATGGATCTGAAT TTCAATAATGGAATCTTCTAACTTTTGACAACAGATGAAGTATAGAGAACGTGTTCTTGGTTTGATACTTGTTTCTCCTC TTTGTAAAGCACCATCTTGGACTGAATGGTTGTACAACAAGGTTCTTTCTCTAAATCTGGAAGACTATGTTTGTGGAAAA TATATAGCTCCTTCTGCTGAAGATTTTGTAACATTTGCAGGTCTTGTCGAATTTACTCTACTTTTATGGCATGTGTGGGG TGGTAAAAGAAATATTGCTAAAGCGATACTTTAGTAAGGTATGCTTATGCTTCCAATAGAATTTCTTTTTATACTTTCTA CAGCATAAGGTTGAGTTCATTCAATTTTGTTGGTGATGATAGGAAGTTCGAGGCAGTGGTAATTTGCCAGAGTTGGATAT AGTTCAAGCATGCCGAAGGGTCAGCCCAATTCATTTTAATATTTTGATGGGGAAACTGTTTTATTGCTGGTAGCTGAAAA CTTATCTGTTATATATGTTTTCTGACAGTCCTTAGATGAGAGGCAGAGTTTGAATGTGTGGCGGTTCCTTGAAGCTATTA ATGGGTAAGATCACACTTATTACTAGAGTTTCAACACCAATCAGAATTTCATTGTACATTCTTGCACTCATGACATATAA TTTGCAACTTTTCATGAACAAATGGATAGCTGATGCTCTTGTTCAACACATATATTTTGGAACAACAATGTGTCTATATC TGACATGTATATGCTACTAAGTACTAACTTGTATTGACATTTTGTAGGAGATCTGACATAAGTGAAGGATTGAGAAAATT GCAGTGTCGCTCACTAATTTTTGTTGGGGACATGTCTCCTTTTCACTCTGAGGCTCTCCACATGAATTCTAAGTTAGATA GACGATTTAGTGCCTTGGTCGAGGTGAGTAATAAAATGTTTCAATCAACTTCTATTTTCTTAGAATCAATTATGACACGA AACTACTAACAGACACATCTCCCCATATTGGATTTTGCCTTTAAATTCAATTGTAGCAGGATTTCCAAACTTGCAATAAT TCATATTAATTAGTGATAAATGCATGTTTATATATCAGTCAAAATGAGCTAAGATTTAATAGCATTTTGTGGTAACTTCA GGTTCAAGCTTGTGGGTCGATGGTAACAGAGGAGCAACCCCATGCGATGCTAGTACCAATGGAGTACTTTCTCATGGGAT ATGGTTTGTATAGACCATCCAAACTAAGTGTTAGCCCAAGAAGTCCCTTGAGTCCATCTTGCATTTCTCCTGAGCTTTAT TCACCAGAGAGTATGGGTTTGAAATTGAAACCAATTAAAACACGAATTTCTGCGGAAATTTAG
CDS sequence (LotjaGi1g1v0366600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGTCCTGCTTTCAGGGGCTATTGTTTTGTCCGGAAATTGGTTCATTGCTGCTCCACAATTTCTGCATATATCAAATT AGTCCACCTGGGCATCAGGTCAGCTTTATTTTTTGAACTATTACAGTTAGGAGCCGGTGCAATTGATCCAGATGATCCAC TTCTCTCTGCTGATGACTTAGCTGATCAATTAGCTGAAGTACTCAACTTTTTTGGTCTTAGTGCAGTCATGTGTATGGGA GTAACGGCTGGAGCTTACATTCTTACCTTATTTGCTATGAAGTATAGAGAACGTGTTCTTGGTTTGATACTTGTTTCTCC TCTTTGTAAAGCACCATCTTGGACTGAATGGTTGTACAACAAGGTCTTGTCGAATTTACTCTACTTTTATGGCATGTGTG GGGTGGTAAAAGAAATATTGCTAAAGCGATACTTTAGTAAGGAAGTTCGAGGCAGTGGTAATTTGCCAGAGTTGGATATA GTTCAAGCATGCCGAAGGTCCTTAGATGAGAGGCAGAGTTTGAATGTGTGGCGGTTCCTTGAAGCTATTAATGGGAGATC TGACATAAGTGAAGGATTGAGAAAATTGCAGTGTCGCTCACTAATTTTTGTTGGGGACATGTCTCCTTTTCACTCTGAGG CTCTCCACATGAATTCTAAGTTAGATAGACGATTTAGTGCCTTGGTCGAGGTTCAAGCTTGTGGGTCGATGGTAACAGAG GAGCAACCCCATGCGATGCTAGTACCAATGGAGTACTTTCTCATGGGATATGGTTTGTATAGACCATCCAAACTAAGTGT TAGCCCAAGAAGTCCCTTGAGTCCATCTTGCATTTCTCCTGAGCTTTATTCACCAGAGAGTATGGGTTTGAAATTGAAAC CAATTAAAACACGAATTTCTGCGGAAATTTAG
Protein sequence (LotjaGi1g1v0366600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCPAFRGYCFVRKLVHCCSTISAYIKLVHLGIRSALFFELLQLGAGAIDPDDPLLSADDLADQLAEVLNFFGLSAVMCMG VTAGAYILTLFAMKYRERVLGLILVSPLCKAPSWTEWLYNKVLSNLLYFYGMCGVVKEILLKRYFSKEVRGSGNLPELDI VQACRRSLDERQSLNVWRFLEAINGRSDISEGLRKLQCRSLIFVGDMSPFHSEALHMNSKLDRRFSALVEVQACGSMVTE EQPHAMLVPMEYFLMGYGLYRPSKLSVSPRSPLSPSCISPELYSPESMGLKLKPIKTRISAEI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 69 | 69 | - | – | |
| Gene3D | 36 | 256 | 221 | 5.1E-48 | ||
| PANTHER | 42 | 300 | 259 | 3.6E-161 | ||
| PANTHER | 42 | 300 | 259 | 3.6E-161 | – | |
| SUPERFAMILY | 43 | 254 | 212 | 1.13E-22 | ||
| Pfam | 43 | 261 | 219 | 3.7E-78 | ||
| TMHMM | 70 | 92 | 23 | - | – | |
| Phobius | 70 | 92 | 23 | - | – | |
| Phobius | 93 | 98 | 6 | - | – | |
| Phobius | 99 | 115 | 17 | - | – | |
| Phobius | 116 | 126 | 11 | - | – | |
| Phobius | 127 | 145 | 19 | - | – | |
| Phobius | 146 | 303 | 158 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0366600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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