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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0369100 |
| Transcript ID | LotjaGi1g1v0369100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal RNA small subunit methyltransferase B; TAIR: AT5G26180.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q96P11|NSUN5_HUMAN Probable 28S rRNA (cytosine-C(5))-methyltransferase; TrEMBL-Plants: tr|I1JTZ9|I1JTZ9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0369100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:84759652..84765651) extracted from Lotus japonicus Gifu genome v1.2.
ATACACTTAAAAAAAATAAAATGAATAACCAAACGAGCCCTAAATTATTTATTCATATCTCAGTTTCTCCTCAATCTCAA CCCCTAAACCCACCCTGTCAATGAAGTCCAAGACGAGGAAGAAGGAGCTTGCTGCGAAGAAGCAGCAGAACCACCAGGGC GGTGGTGGTGGTGGCGGCAGAGTAGAACAACCAAATGAAGAGAAAAAAGTGACCGCCGTGAAGTTGAAGGGAGCGGAGAG GTCAGCTCACTTCGCACGGAGAGAGGCAGCGAAGATCTTGAAAACTGTTCTCGAAGGTGACGCTAAGCGCCGCGCACTTG CCTCCATCAAAACCCTCATCTATAAACCTTCCATCAGAAACAAGAAGGCCACCTTCGCTCTCATCTGTCAAACCCTCAAG CGTAACAAACCTCACTCCCTCATACTTCCTCTCTGAAATTCCATTAATTTAATGCATAAAAAGTGTGTTTGTTTGTTTCA TTGTGAATTCACAGATCTTCCTATTATCAAGGATGTCTTGGAAGCTTCTTCTATTCTCAATACCAAGTGGAAGGTAATAA CAAATAACCACATTTTCTTTGACATTGAATCATTCTCAGTTTACATGTTAATGTAATGTATCATCTACTATTGCTTTTGC AGAAGCATCAAGAATTGATTTACATCATTCTCTATGATATACTTTTCGGTCAGGTGAGTGAGCTGATTTTCGGGACTTCT ACTTATAGGCTAGTCAATTTCTGCTTTAGAATGTGATATCTGCTTTGGAGTAAATGAATCTTGTAAGGAGAATTGGATAG CTAAAGTTAGTTAAGTTTGGAGTATTATTCAATTGTGATGTTAAGTTATGTGTTGTAGGTAGTATATAAGCTGCTCATGT AAACTGTATCAGTGTGGGATTCATTTTATTCAATTCTCAGTATTCTATCTATCTCGCTCTGATAGAAGAACAGTCCCTTT TATCTGATACCTTACGAATCTCTAGGAAGTTTCAGTAGTTGGTGATGCTGAGAAGTACCTTATGCGCCACAAAGGCGCTC TACATGCAACTCTGAAACAGCTTTTGGCACAGAGAAAGGTGAAAACGGTTAAGCAGCTGGTTGCTCAATACCATGTTCCG GGTCAGTTATCACATCTCTCATCTCTGCACACCCTCTTCCATATATTTTTCCTTTCTGGATTTTGCACTCCTCATGGTTG ATTCATGGCATGGAAATTGTGATAATCATTTTGGAAGTCAATGCATTTTCAATGGGAAGCTATCATTCTTTATTCATGAA TCATGAGAGTTGCTGGCTAGCTGCTTTACTTTGCTAATGACTTGAACTTGTTCAAAATCTTCTTGCAGAGATTTCTGTAC CTCGTTATGTTCGTGTGAATACTCTTAAACTGGATGTAGAATCTGCCTTACTTGAACTTCGGGAAAAATACTCGGTAATT TTTAATATTTCTGATGTGTTGTTTCTTTTTCACAAATTGCAGTTTCTTTATTTAAACTATTTCTCTATGTTTTGATTGAT GAGGAGTTTTTTGTCGTGTCAAATAGGTTCAAAAGGACGATTTACTGCCTGACTTGCTGATACTACCGCCAGGAACTGAT TTACACGATCATCCTCTTGTCAAGAATGGAAGTGTCTTTTTGCAAGTAGGAATTACCCTTATATAAGTGATTTGTTGTCA TCTAAGATTTAAGAAATGCGCTGACATTTCAATTCTTGCTGCTGCTTTTCATTCTCGGTAATCTTTTCACTAACACAGAC ATACTTTTGTATAGGGTAAGGCAAGTTCCATGGTGGCACCAGCCCTTAGCCCTGAACCAGGATGGGAGGTGAGTTATTGC TATATTACATATGATGACATAAAGAGGTTTAGCTGTAGCTCCTCATTATCCTTGTAAACATCATCTATCACCATCTCATT TCTGAATTTTTTGTGGCGGGGGGTTAGAGCTTTACCTCACGACTTGCAAAATTTTCCTTCTCTTTTAATGCCTTCTTCAA AAATACTTGTAGGAAACAGAGAGTTCACCTGATTTTGCTTTTGGTTGTAAATTCTTAATAAGTATCCTTTTTAGTGGTTT GATATCTTGATGTCTTTCAAGATTTTTCATAGCCATTTTTTAATCAATTAACACGTATGGCTGAAAAGTAATAAGAAAAC TAGGGCTAGTATGGCCAGAACACACAGGAGCAATTTCTCTTCTCGGCCAAAACCAAAGTTGAAACAAAATATATTTTAGT CACTGTTTAACAGATTATTCTGTATATATGGGCCTGTTCCTTTTGAGTTAACTAATCATTCTAGAAAGTATTATTTTTTT ATCCTCAAGCATGATTGACTTTGAAAGAATCCAAAAAGTGGCTAATATTTCCATGTGTGAATTACTAAAAGACAAGTGAG TAATTGCAATACACTTGTGCTGCGTATACCTATTGTCTGATGCCTACATTATTTTAACTATCATGTTATGAATGCTTAAT TTTTAAATTAAATTGTAAAATATCATACCTGGGAAAAATATATTTTGCATCTGAGATATCTTCTTCTGGTCCTTACTAAT TGTCAACTTCAAATGTATTTCAAGGTTCTTGATGCATGTGCAGCACCAGGAAATAAAACAGTCCACCTTGCTGCCCTTAT GAAGAGAAAGGGTAGGATTATAGCATGTGAGCTGCACAAAGAAAGGATTATGCGTTTGAAAGACACTATAAAGCTATCTG GGGCTTCTAGTATCCTCTATTGTGTTTCTTTCTAATATGTAGATGCTTTTCAACTGAAAGTTCCTTCAATGTAACAATAA TAATCGGCTAAGATTTTATTTAATCATGCATGCTAAGCAGCTGTCCAGACTGTATATTATACCATGATGCCTACAGAGTG GAGGAACACACTAATAAATTTTGATACCATTTTTCTGTAGTTAATCTTCAGTTTATATTGCAATGTGTCAAACTTAACCC CAAGTTCAGACATACAAGTTCTCAATGAGGATTTCTTGAAAATAAATCCCACGGATCCTCCATATTCTAAGGTGAAGTAT ATTTCCTTCCTCATCTGTAGTTTTAAATTTCAAAGCTTGTTGGGGCATTTACTGGAGTGGCCACCAACATTTTGATTGAT TTTGATCTGCAATTGTCAGACTTCACCATTTACTACTAGTACATCGATTGTTTTCTTCTACAACTAATATTTCTGACAAG TTATTTCTTGTTCTGAGCCACTTAATCAATGTATTTTGGCATTGCAATGAGGGACAGGATATGGGATTGGAACCAATAGA TTCTTAAATTTTTGTTGGCCATTTGTATGATGAAGTATGTAATCTGCTGAATGCTTTTGGTAACATAGTTTGTGTCAAAA AAATTGTACACAGATTAAAGTTTTTTTTTCTTTTCCCGTTCACATTTCTCTAATTGAAGGAGTGTTTTGGGTATCAACAA GGAGTTAACCCCTTTACTGAATGGTGCTGGACTGTTTATATTCTTTTAAGTTCTGTAATAGCATTTCGGTTTTGTCTGAA TCAGGAGAGTAATAATGACTTACGCATTGGTTATTCACCTATTCTTGACTTCGTCTTCCAGATTGCAATTTTACTTAGTT CATTTTTTTCAGTGTTTGATCATTTATCAGATTTAACATTACAGGTGAAAGCTATTCTTTTGGATCCTTCCTGCTCTGGT TCTGGTACTGCTTCTTCAAGACTAGACCATCTACTCCCATCTAAAGCAGCAGGTTACATTTAGTTCTATCTACCTTCTAT GTTTTAGAATGTATGCACCTAGTTATCAACATCTGTGCATATGAAACGCCTCTTAATGCTTATAAAGGAGTTGAAGTTTA TTGCGGAAAAATGATTAGTGTATGGTAGTATCTCAAAAATCAATTTTTGTCATTCTAACAAATCTAATTCACCTATGTGC CATGATCTAATTTACAGCATTAGACATCATTTTTCTATCTAATGCAATGATACAACTTCTGATTGCATAGGTCAGGATGT TGATATGGAAAGATTGAACAAGCTTGCAGCTTTTCAGAGAAAGGCTCTTCAGCATGCTTTACTTTGTGAGTTAGTTCGTT TCTCCTTGCCAATTCGGTTTTATTCTCTGTCCCTGTTTCTAGACCGATCATCATTTTTTTTTAATGATTGTACATGAGCA AGATGAAATCCTAAGATTTATATAATGTTCCTTAAACTTCACACTTAACACTAACAGTATTTAAAGTAAAAATCGTTTCC TTTGACAGTTCCAGCTGTGGAAAGAATTGTCTACAGCACTTGTTCAATCAACCAAATTGAAAATGAAGATGTCATCACAT CTGTCCTTCCCATAGCCGAATCGAATGGATTTGAGCTGGTAAAGCCTTTCCCTGAGTGGCAATGCCGTGGTCTTCCAGTG TTTGAAGGATGTAAGTGTTACCATTCTCAGGTAGCAACACATACTCATAGCTTCATTTGGTAAATTCTAACACTGCTTGC ATTCTTGCCTCACAGCTGAACACCTGATTCGGACAGATCCTGCCAAACACGGTGAAGGTTTCTTTATTGCCTTGTTTTCC AGAAAGGATGCTAATGTTTCAGTGAGGTCAAATAAGAAAGAAAATAGAACTAGAGTGCAAAGGAAGAAACCTATACCCTT GTTTATTACCACTAACCCCTTCAAAATGTGGTTATTTGATAACCTGAGCAGGTCCCGCTGTTGAAATTGGATTAACAAAA GAGCTGGTTAAGGCGATTATTTATCTTCTTTTTTCTAAATGTAACACTAAACCCCCCATTTCATTAGTTTTTTTTTTAAT GTAAGAATATTTATTAAAAAAAATAGACAGTAGTTTGTACCAATTTCTTTGAAAAAAATGCATTGAATTTCAACTTTTTT AGAGATGAAGTTGTTTGTCTCGGGCATTTTTACCTTCTCCCCATGTTCAGGAATGGATGAGAAATTGTTTTCTTGTTTAT ATCCATTTATTGTTGTGATAGGTGTTCATAGATTGAAAGAAATTGATAGTTGATGTAGTGATCCCGCACTTTGCCCCGTG AGTAAATTCTTGGGGTTCAATTTTCATCTTTTCTGAGGAGAAAAAGCTCATTAACAAGTTAATGAGTTGATTGTGGTTCA AGAGATTAGTCTCCCAGTACTAGCTAAGCAATTTTTCTTTTGAAAGAAAGCACGACTCAAGTCTAGAGAAATTAGAAACT AGGTAGATTAGCTATAACATTAAAGCTAACAAAACATTACATTCATGATTATGTAACATAACACATCGCAGCAAAAGGCA TCATCATCTGAAAGGCACAAAACCATTGTCATCATACAAACAAAACCATAAACAGAAACAGCTGCTTCTCTGCAAATGTA GGTTTGGTCGTACACAACAAGCTCAAGCAACCTTAACCTCAATGGTCTTGGGCTTCTTAGGCTCAGGAGGTGGCAGCTTG TTCACCGTGACAGTGAGCACACCATCTTGGCAAACAGCAGAAATGGCATGGACATTAGCATTCTCCGGGAGCACAAACTT CCTCATGAACTTGCCAACCCTCCTCTCCATCCTCACATACTTGGACCCTTCTTTCTCCTCATCCCTCTTCCTCTCACCAC TTATGAGAAGCACATTGTCATCCTCCACCTGAACCTTGATGTCACCGGACTTCAACCCCGGCATGTCGATCACGAACACG TACGAGCTCGGGTACTCCTTCACGTCCGCAGGGGTGGCTGCCATTGCCTTGGCGTCGCGGAGGTAGGTCCGGGTGGGAGC GTGAGAGTTCTTCTCGGTGGAGTCGTCTGGGAGGTCCATGATGTGGTGCAGTGTGTTCAGCAGTGGAGAATCTAGACCCA TCAACCTGATATCCATTGCCTCTTTGTCTTTGATTCTTCTCTTGTGTGTAAATTTTATGTTGTGTTGTTTTCAGGAGCTT AGATTTCTTACAATGATTTTGAGAATGGAGAAACTTGAGTATTTATATGTAAAGGAACGACAGAGGAAGAAGGGATTGGG
CDS sequence (LotjaGi1g1v0369100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTCCAAGACGAGGAAGAAGGAGCTTGCTGCGAAGAAGCAGCAGAACCACCAGGGCGGTGGTGGTGGTGGCGGCAG AGTAGAACAACCAAATGAAGAGAAAAAAGTGACCGCCGTGAAGTTGAAGGGAGCGGAGAGGTCAGCTCACTTCGCACGGA GAGAGGCAGCGAAGATCTTGAAAACTGTTCTCGAAGGTGACGCTAAGCGCCGCGCACTTGCCTCCATCAAAACCCTCATC TATAAACCTTCCATCAGAAACAAGAAGGCCACCTTCGCTCTCATCTGTCAAACCCTCAAGCATCTTCCTATTATCAAGGA TGTCTTGGAAGCTTCTTCTATTCTCAATACCAAGTGGAAGAAGCATCAAGAATTGATTTACATCATTCTCTATGATATAC TTTTCGGTCAGGAAGTTTCAGTAGTTGGTGATGCTGAGAAGTACCTTATGCGCCACAAAGGCGCTCTACATGCAACTCTG AAACAGCTTTTGGCACAGAGAAAGGTGAAAACGGTTAAGCAGCTGGTTGCTCAATACCATGTTCCGGAGATTTCTGTACC TCGTTATGTTCGTGTGAATACTCTTAAACTGGATGTAGAATCTGCCTTACTTGAACTTCGGGAAAAATACTCGGTTCAAA AGGACGATTTACTGCCTGACTTGCTGATACTACCGCCAGGAACTGATTTACACGATCATCCTCTTGTCAAGAATGGAAGT GTCTTTTTGCAAGGTAAGGCAAGTTCCATGGTGGCACCAGCCCTTAGCCCTGAACCAGGATGGGAGGTTCTTGATGCATG TGCAGCACCAGGAAATAAAACAGTCCACCTTGCTGCCCTTATGAAGAGAAAGGGTAGGATTATAGCATGTGAGCTGCACA AAGAAAGGATTATGCGTTTGAAAGACACTATAAAGCTATCTGGGGCTTCTAACATACAAGTTCTCAATGAGGATTTCTTG AAAATAAATCCCACGGATCCTCCATATTCTAAGGTGAAAGCTATTCTTTTGGATCCTTCCTGCTCTGGTTCTGGTACTGC TTCTTCAAGACTAGACCATCTACTCCCATCTAAAGCAGCAGGTCAGGATGTTGATATGGAAAGATTGAACAAGCTTGCAG CTTTTCAGAGAAAGGCTCTTCAGCATGCTTTACTTTTTCCAGCTGTGGAAAGAATTGTCTACAGCACTTGTTCAATCAAC CAAATTGAAAATGAAGATGTCATCACATCTGTCCTTCCCATAGCCGAATCGAATGGATTTGAGCTGGTAAAGCCTTTCCC TGAGTGGCAATGCCGTGGTCTTCCAGTGTTTGAAGGATCTGAACACCTGATTCGGACAGATCCTGCCAAACACGGTGAAG GTTTCTTTATTGCCTTGTTTTCCAGAAAGGATGCTAATGTTTCAGTGAGGTCAAATAAGAAAGAAAATAGAACTAGAGTG CAAAGGAAGAAACCTATACCCTTGTTTATTACCACTAACCCCTTCAAAATGTGGTTATTTGATAACCTGAGCAGGTCCCG CTGTTGA
Protein sequence (LotjaGi1g1v0369100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSKTRKKELAAKKQQNHQGGGGGGGRVEQPNEEKKVTAVKLKGAERSAHFARREAAKILKTVLEGDAKRRALASIKTLI YKPSIRNKKATFALICQTLKHLPIIKDVLEASSILNTKWKKHQELIYIILYDILFGQEVSVVGDAEKYLMRHKGALHATL KQLLAQRKVKTVKQLVAQYHVPEISVPRYVRVNTLKLDVESALLELREKYSVQKDDLLPDLLILPPGTDLHDHPLVKNGS VFLQGKASSMVAPALSPEPGWEVLDACAAPGNKTVHLAALMKRKGRIIACELHKERIMRLKDTIKLSGASNIQVLNEDFL KINPTDPPYSKVKAILLDPSCSGSGTASSRLDHLLPSKAAGQDVDMERLNKLAAFQRKALQHALLFPAVERIVYSTCSIN QIENEDVITSVLPIAESNGFELVKPFPEWQCRGLPVFEGSEHLIRTDPAKHGEGFFIALFSRKDANVSVRSNKKENRTRV QRKKPIPLFITTNPFKMWLFDNLSRSRC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 38 | 38 | - | – | |
| PANTHER | 52 | 467 | 416 | 1.2E-158 | – | |
| PANTHER | 52 | 467 | 416 | 1.2E-158 | – | |
| ProSiteProfiles | 178 | 463 | 286 | 52.025 | ||
| SUPERFAMILY | 186 | 462 | 277 | 2.09E-48 | ||
| Gene3D | 207 | 243 | 37 | 6.2E-8 | – | |
| PRINTS | 235 | 249 | 15 | 7.7E-14 | ||
| Gene3D | 244 | 470 | 227 | 1.3E-68 | – | |
| Pfam | 254 | 460 | 207 | 4.3E-28 | ||
| CDD | 263 | 344 | 82 | 1.32175E-6 | – | |
| PRINTS | 264 | 274 | 11 | 7.7E-14 | ||
| PRINTS | 333 | 345 | 13 | 7.7E-14 | ||
| PRINTS | 389 | 405 | 17 | 7.7E-14 | ||
| PRINTS | 445 | 462 | 18 | 7.7E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. |
Expression pattern of LotjaGi1g1v0369100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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