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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0376300 |
| Transcript ID | LotjaGi1g1v0376300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb/SANT-like DNA-binding domain protein; TAIR: AT2G24960.2 Myb/SANT-like DNA-binding domain protein; Swiss-Prot: sp|Q9FFJ8|LIMYB_ARATH L10-interacting MYB domain-containing protein; TrEMBL-Plants: tr|K7KIC8|K7KIC8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0376300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:85527494..85533263) extracted from Lotus japonicus Gifu genome v1.2.
CAGGGAAAGAGGGTTATATGATATCCCTTATTCCGGATTAGGGTTAATCTTCAACATTGCGCAGAGTCATCACCAGTCAC CCCATTACAGCAATCGGTAAAAAGCTTCAAACTTTTTTCACCCCTTTACTTCCAAACGTGAAAAACCTCCAAACTTTCTT CACCATTGTGCTTTAGAACATGAATTGAATTGTCTTGTTTGGTAATGAATTCACATGTTCCTGTCACACAGACAGAGCAA AACAGCATACAACATTGGTGTTAACTGTTAAGATTCTTGTCAAGGCACAATGAGTAACCAAAATGGTTCAAGCAATGACC GGTCAAGGATGCATTGGACTCCATTGATGGAGCGTTACTTCATTGATCTAATGTTGGAGCATTTGCAGAGAGGAAACATG GTTGGCCACACTTTCAACAAGGATGCTTGGACAGACATGCTCACCATGTTCAATGCCAAGTTTGGTTCACAGTGTGATAA GGATGTCTTGAAAGCTCGTTATACTAATCTGTGGAAGCAGTTCAATGATGTCAAGAACATTCTATCTCACTTTGGTTTTT CTTGGGATGCTGTGCATCAAAGGGTTGTGGCTGATGATTTTGTTTGGGAGGATTATATCAAGGCTCACCCTGATGCACGG TGCTTTAGGACTAAACCAGTGCTTAACTTTGATGATTTGTGCATGATATATGCTCACACCTTTGCTGGTGGAAGATATAG TTTATCAAGCCATGATGTAAGCCTTGATGATCAAATGCCAGGACTGCATTTGCCCTCAGGTGAGTGTTACTTTCAGACCT TCAATGTTCCCATATAACATGCATTACAGTAGAAACTAAATTACGGTCTTGTTTGGAAGAGCTTATTTTAACTTATTTTG TAGTATAAATGCTTATGCAAGTGTTTAAATAACTCATGAGTCATGACCTCTATATAAGCTGTTTTGATCTTATTCTCATA GCTACTCAGTTTAGCTTATGCATGCTTCTCAACATACCTACAGGCTAGAACATATTTGAGCTTATTTCAATAAGCTTATC AAATTAGCTTATGAATAAGAGCTTATCCGGTAAGCACTTATTGCCATTAGTGCTTAATTATGTTGTTTACCCAATTTCAC CCATATAGTTTTCCTTAATTGACAATTGTTTTGGTGGTTATTGCAACTCATGCAATAAACTTATGGTAATGGGAGCTTAT CTTAATTATGTATTCTGCAACTTGTAGGTGATGGAACAGGAAGCTCTGCTGTATCAAGTAATGAGCTGCTCAAGACAGAT TGGACTGCTTCAATGGACCAATTTTTCGTTGAGCTTTTGCTTGATCAGTTGGGCAGGGGCAATCAAGTCAATAATTCATT CAATAAAAAGGCTTGGACAGATATGCTAGCCATGTTCAATGCTAAATTTGGATCTCAACATGGTAAAAGGATTTTAAAGA ATCGATTCAAGAAACTGCTGAAATGTTACCGTGACATGACAAAACTTCTAAAACAAGGCTTTTTGTGGAATGAACAACAG CAGATGCTTGTCGCTGATGATGATGTCTGGGATGCTTATATCAAGGTATATGCCCAAGAAGGCTGGTATGTGAGAGGGGG GGTGTGTAGAGGAGTATATACATGCTTCCTGGCGCTGACTGTCTTAAAATTCTTGTAGGCACATCCACATGCACGTACAT ATAGATTGAAAACATTGCCAAACTATCATGATTTAGAATTATTATTCAGAAATGTGTGTGGAGATGAGATCAGTAATTTG CATCAGGAGAAAAATCATGAAGCTGTCATATCCGAAACAAAGAGGGGTGAGTAGCAACTAAAAGCATTCTCTTAGCTAAT TCAAGTCATTGCGTTACTATCTTGCATTTATTTAAAGAAAATTAACAACTTGGTCCATAATGGTAATGAAAAACTCATGG AAAATCAACTGGTGCACTTGTCTGAAGTTGTAGCTGAATGCAGAAACATTGAAGAAATAGAACTTTCTAAGTTAGTTAGT CGGTAAATACTTCTTATATCTTCCAATGTCCTTCTTATTAATGTTCATGGATATTTTCTTGTATGAAAAGACTAAAAATG TGCTTGTTACTTGAGAATTTAAAATAATCAACTCTGAAGGGGAATTTGGGATCCTTTTGCTCATGCAATTGTAATTTCAT GAACATCTGCATATTATATTGCAAAATATCTTGCAGTCCAAAATCAAAAGGGTTCAAATAGGTGGACATGATAAGTTCTC ATGCACTTCAAAAATTACTATTGTGATATTTAGGTTTATTTGATACTAGGAATAAATCAACACCCTATGTTATAATTCAT ACTTGAGTCCTTGAGGTCTTGGGACAACTGAGTAGTTACCTCGATGATTGTGTATCTTTCCTAAGGTGAACAAAAACGAA GGCGGAACCCAAGTGGTACTGATCGTACTAGAACATGTTGGACACCCCCGATGGATGCTTGCCTCATTGACTTGTTATTA GAGCAGGTCAAAAGGGGAAATAGACTTGGGCAAACATTCATTACCCGGGCTTGGAATGGCATGACTGTGTCTTTCAATGA ACAATTCAAATCTCAATATGACAAAGATGTTCTGAAGAATCGTTACAAACATTTGAAGAAACAGTTCAATGAGGTGGACA ATCTTCTTCAGCAGGATGGGTTCTCATGGGATGATACAAAAGAAATGGTTAATGCAGAGGATCATGTTTGGGATGCTTAT ACAAAGGTGACATTTTTTTTTACTCTGATTAGGCTTCTTAGATGTTCTATGGTTAAGTTAACATGCAATTTCTGCAGGCA CACCCTGAAACTCGATCACTTAGAGTTAAAACCTTACCAGGATATCACAAATTGTGTGTTATATTTGGAGAGGAATGTTC TGATTCTAGACATTTCAGTTTATCACATGATGCAGATCCCAGTAACGAATTATTAGTGTTGATAACAGGTATGTTTTCTG TACAGTTACAATAATAAAGCGCTATCTTGGACATGGACTGGTAGATTGAGAAATGTTGTATGGTTGTTGTTATATTATTA CTTCTTACATTCAAAACTGTCCATTAGCTACACCTACACCTTCTTAAGAGTAGAAAGTTAATTTTACTACCGATAATTTT ATTTGGGTCCCAAGCAAGTTCTCTGTTTACCGATTTATCCCAACTTACTATAGTAACTATGAAAAAGCCAAAATTCCGTA CTACTAATATCACAAAGTTCAATGTCATTTCACAAATTACACCTAACTATTGAAGCAGCAATTGATAACCCATAGTGTCT TCTTTAACATGTATTGACGACCAAATACTCTCCCCTTCCTTGAATCTTTTTCTTTGTTCCTGGCTATATTAGATTGTTTA CAATTAGGTAGCTTTTGAAGCAAAAATAGAATGGAATGGAACTGAAAGATTTTGTTCTGTTCTTGTCGGTTCCTCCCCAT CTTGTGGAATCAAGGCATATTAATATTTTTAACCTCATCATGTTTTGTACAATTCTTAAATACCAAATATAATATAAAAT CCGTAATCTGTCCCATTCTAACGCATTGAACAAATTCACCCTTAATTTTTTCTAGAAATTTTAGCCATGCTTGACATGTA ATGTTCTACCTCCATTCCTATTTATCTTTTCAGAGTGACAAGAAAACACACAAATCAATCTCAATCAATAAATACCTTCA ATTTGTTTGAGTTATTTATAGACTTTCTATTTGACCCTTTGAGCTTTGGACTACTCATATAGTAACTCAATACTGGAGAG TTTGTTGTGTTTAAGCATTACATGGCATAAGGATATTTAATGTTTTCTTGAACTACTATATTGTCAGATAAACATGGGCA AATTTTTTCTTCTCTAACTAGACAATAAATAGGAATGGAGGTAGTATCGTGTATTGGTATTAGGGGTAATCGTATTGGGA GTCTTTTTCAGACAAGCTTTTACTTTCTGTATTCTTATGGATATTTGGTTATTTACAATTTAAAGGTGAACAGAAGAATG CCACAGGTCCCAATGTTTATGATGCTGATTCTACAATAGAATGGATGGAATCAATGGAAATCTGTTTTGTTGACCTTATG ATTGAGCAACTAAACAGAGGAAAGAGGATTGGAGAGTTTTTCAATGAGTATGCATGGACCCAGGTGACTGAAGCATTCAA CGCTAGATTGGGACTCCAATGTGATAAGCAATTTCTCGTAGATCAGTATTTCTGCTTGATGAAAAAGCATAATGACATCA GCAAAATTCTCAGTCACAGTGGATTTACATGGGATGAAACTCTACAAACGGTAACTGCTGAGAATGATACCTGGGATGCA TATATTAAGGTCTTGTTCTCTATCCAATTCTCCCTTGTTTTTGTTTGCTATCATCATTCTGCAGTTGCATGATTGCATCT GTTGTAGACTTCTTTTAGTGCTCTAACACTCTGTTCTCTTAATCAGAGGTGTTTGCTCGCTTATCTGGAATAGTTTGTGA CCACTATCTATTTCTTCACAATCTTCTGATTGCAACTTGCTGCTGAATGATATTTGCAGGATCACCCAGATGCCGTATCA TATAAAAACAGGTTTTTGTATCTTTTCAATGATTTGTGCAAGATTTTCGGAAACAAAGTGATGCAAGTACCAGATGCAGG AGAGATTGCTCAGGATCAGCACCAGTTGATCGAAGCCAACGATGTCACCGTTGAGATCGATATGGACGGAACATGTGAAG ATCTGGCTGAGATTAGCAATTTTGATATATCCGATGAGGACTTAGACTGGCCAAGGGAATTGAACATGGATGGATCACCT GAAAATTTGGTTGAGAGTGGCAGCCCTAAAATTTCATTCCAAGATAAGAAAAAGCCAAGTGTGAACAATATGTTTGGAAT GTCTGGAATTTTGGATGGGACTATTAAAAATGAAATATCAAACCTAGATACAGAAAGACCTAAGGAAATGGGAATGGATA TAACAACATCTGGTGATTTTGCTGTGATTGGGAACACTCAAATAACATCTCAAGATAAGAAAAGGCCAAGCATAAACGGA ACAAGTGGTGATTTGGTGATGAGTGGCAACACAACAATAACACCTTGTGTTAAGAAAAGGCCTAGTTTAATGCCATCAGA ATCCAGGCCTGCCAAAAAGGAGCTGAGAATCAAAGAAGCTTTGTCTAAGATGGCAAGTGCTGTGAAGGCACTGGTGAATA AGAAAGAAAAGAACAACAACAAATCGTTTGAAAATGCATTGAGTGCACTTCAAGCTATGCCAGACATAGATGATGAGCTT GTAATGGAGGCGTGTGATCTTTTGGAAGATGAGAGAAAGACCGAGATATTTTTAGCTTTGAATGTCTCGTTGAGAAAGAA GTGGTTGCTCAGAAAGCTTCGGTGGTAACAGCCGCATGTCTTCCCTGTATAGTATTGTATATTAAAGCTTAGCCTGAGCA TGTTTGGAAAATTAACTGCAGCCTGTGAACATGTAGAATCGATTTAAGTTTTGAAAAACTACTCTTTGTAGCTTATAGAT ATAGAATAGATTCTGAGTTTGGAAAGTGAAATCCAAACATGCACTGTGTTTTGGTTTTTGTCATTTAACTTTCTGTTACA ATTCTTGAACTAAATTGAACTTTTCATTGTCCAGATTATCCTTCTTCTTCTCTAGCAAAATCACAGACATAATCCATAGT GAACTGCCTGTGTACAGTAACAGAAAGCCCGAGTTACTGCACCTTCTTAATTATTCTCTTGGCTTATAAAAAAAACCTTC TTAATTATTC
CDS sequence (LotjaGi1g1v0376300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTAACCAAAATGGTTCAAGCAATGACCGGTCAAGGATGCATTGGACTCCATTGATGGAGCGTTACTTCATTGATCT AATGTTGGAGCATTTGCAGAGAGGAAACATGGTTGGCCACACTTTCAACAAGGATGCTTGGACAGACATGCTCACCATGT TCAATGCCAAGTTTGGTTCACAGTGTGATAAGGATGTCTTGAAAGCTCGTTATACTAATCTGTGGAAGCAGTTCAATGAT GTCAAGAACATTCTATCTCACTTTGGTTTTTCTTGGGATGCTGTGCATCAAAGGGTTGTGGCTGATGATTTTGTTTGGGA GGATTATATCAAGGCTCACCCTGATGCACGGTGCTTTAGGACTAAACCAGTGCTTAACTTTGATGATTTGTGCATGATAT ATGCTCACACCTTTGCTGGTGGAAGATATAGTTTATCAAGCCATGATGTAAGCCTTGATGATCAAATGCCAGGACTGCAT TTGCCCTCAGGTGATGGAACAGGAAGCTCTGCTGTATCAAGTAATGAGCTGCTCAAGACAGATTGGACTGCTTCAATGGA CCAATTTTTCGTTGAGCTTTTGCTTGATCAGTTGGGCAGGGGCAATCAAGTCAATAATTCATTCAATAAAAAGGCTTGGA CAGATATGCTAGCCATGTTCAATGCTAAATTTGGATCTCAACATGGTAAAAGGATTTTAAAGAATCGATTCAAGAAACTG CTGAAATGTTACCGTGACATGACAAAACTTCTAAAACAAGGCTTTTTGTGGAATGAACAACAGCAGATGCTTGTCGCTGA TGATGATGTCTGGGATGCTTATATCAAGGCACATCCACATGCACGTACATATAGATTGAAAACATTGCCAAACTATCATG ATTTAGAATTATTATTCAGAAATGTGTGTGGAGATGAGATCAGTAATTTGCATCAGGAGAAAAATCATGAAGCTGTCATA TCCGAAACAAAGAGGGGTGAACAAAAACGAAGGCGGAACCCAAGTGGTACTGATCGTACTAGAACATGTTGGACACCCCC GATGGATGCTTGCCTCATTGACTTGTTATTAGAGCAGGTCAAAAGGGGAAATAGACTTGGGCAAACATTCATTACCCGGG CTTGGAATGGCATGACTGTGTCTTTCAATGAACAATTCAAATCTCAATATGACAAAGATGTTCTGAAGAATCGTTACAAA CATTTGAAGAAACAGTTCAATGAGGTGGACAATCTTCTTCAGCAGGATGGGTTCTCATGGGATGATACAAAAGAAATGGT TAATGCAGAGGATCATGTTTGGGATGCTTATACAAAGGCACACCCTGAAACTCGATCACTTAGAGTTAAAACCTTACCAG GATATCACAAATTGTGTGTTATATTTGGAGAGGAATGTTCTGATTCTAGACATTTCAGTTTATCACATGATGCAGATCCC AGTAACGAATTATTAGTGTTGATAACAGGTGAACAGAAGAATGCCACAGGTCCCAATGTTTATGATGCTGATTCTACAAT AGAATGGATGGAATCAATGGAAATCTGTTTTGTTGACCTTATGATTGAGCAACTAAACAGAGGAAAGAGGATTGGAGAGT TTTTCAATGAGTATGCATGGACCCAGGTGACTGAAGCATTCAACGCTAGATTGGGACTCCAATGTGATAAGCAATTTCTC GTAGATCAGTATTTCTGCTTGATGAAAAAGCATAATGACATCAGCAAAATTCTCAGTCACAGTGGATTTACATGGGATGA AACTCTACAAACGGTAACTGCTGAGAATGATACCTGGGATGCATATATTAAGGATCACCCAGATGCCGTATCATATAAAA ACAGGTTTTTGTATCTTTTCAATGATTTGTGCAAGATTTTCGGAAACAAAGTGATGCAAGTACCAGATGCAGGAGAGATT GCTCAGGATCAGCACCAGTTGATCGAAGCCAACGATGTCACCGTTGAGATCGATATGGACGGAACATGTGAAGATCTGGC TGAGATTAGCAATTTTGATATATCCGATGAGGACTTAGACTGGCCAAGGGAATTGAACATGGATGGATCACCTGAAAATT TGGTTGAGAGTGGCAGCCCTAAAATTTCATTCCAAGATAAGAAAAAGCCAAGTGTGAACAATATGTTTGGAATGTCTGGA ATTTTGGATGGGACTATTAAAAATGAAATATCAAACCTAGATACAGAAAGACCTAAGGAAATGGGAATGGATATAACAAC ATCTGGTGATTTTGCTGTGATTGGGAACACTCAAATAACATCTCAAGATAAGAAAAGGCCAAGCATAAACGGAACAAGTG GTGATTTGGTGATGAGTGGCAACACAACAATAACACCTTGTGTTAAGAAAAGGCCTAGTTTAATGCCATCAGAATCCAGG CCTGCCAAAAAGGAGCTGAGAATCAAAGAAGCTTTGTCTAAGATGGCAAGTGCTGTGAAGGCACTGGTGAATAAGAAAGA AAAGAACAACAACAAATCGTTTGAAAATGCATTGAGTGCACTTCAAGCTATGCCAGACATAGATGATGAGCTTGTAATGG AGGCGTGTGATCTTTTGGAAGATGAGAGAAAGACCGAGATATTTTTAGCTTTGAATGTCTCGTTGAGAAAGAAGTGGTTG CTCAGAAAGCTTCGGTGGTAA
Protein sequence (LotjaGi1g1v0376300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNQNGSSNDRSRMHWTPLMERYFIDLMLEHLQRGNMVGHTFNKDAWTDMLTMFNAKFGSQCDKDVLKARYTNLWKQFND VKNILSHFGFSWDAVHQRVVADDFVWEDYIKAHPDARCFRTKPVLNFDDLCMIYAHTFAGGRYSLSSHDVSLDDQMPGLH LPSGDGTGSSAVSSNELLKTDWTASMDQFFVELLLDQLGRGNQVNNSFNKKAWTDMLAMFNAKFGSQHGKRILKNRFKKL LKCYRDMTKLLKQGFLWNEQQQMLVADDDVWDAYIKAHPHARTYRLKTLPNYHDLELLFRNVCGDEISNLHQEKNHEAVI SETKRGEQKRRRNPSGTDRTRTCWTPPMDACLIDLLLEQVKRGNRLGQTFITRAWNGMTVSFNEQFKSQYDKDVLKNRYK HLKKQFNEVDNLLQQDGFSWDDTKEMVNAEDHVWDAYTKAHPETRSLRVKTLPGYHKLCVIFGEECSDSRHFSLSHDADP SNELLVLITGEQKNATGPNVYDADSTIEWMESMEICFVDLMIEQLNRGKRIGEFFNEYAWTQVTEAFNARLGLQCDKQFL VDQYFCLMKKHNDISKILSHSGFTWDETLQTVTAENDTWDAYIKDHPDAVSYKNRFLYLFNDLCKIFGNKVMQVPDAGEI AQDQHQLIEANDVTVEIDMDGTCEDLAEISNFDISDEDLDWPRELNMDGSPENLVESGSPKISFQDKKKPSVNNMFGMSG ILDGTIKNEISNLDTERPKEMGMDITTSGDFAVIGNTQITSQDKKRPSINGTSGDLVMSGNTTITPCVKKRPSLMPSESR PAKKELRIKEALSKMASAVKALVNKKEKNNNKSFENALSALQAMPDIDDELVMEACDLLEDERKTEIFLALNVSLRKKWL LRKLRW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 164 | 164 | 3.4E-265 | – | |
| PANTHER | 1 | 164 | 164 | 3.4E-265 | – | |
| Pfam | 15 | 109 | 95 | 7.9E-29 | ||
| PANTHER | 171 | 316 | 146 | 3.4E-265 | – | |
| PANTHER | 171 | 316 | 146 | 3.4E-265 | – | |
| Pfam | 182 | 274 | 93 | 1.2E-25 | ||
| MobiDBLite | 315 | 337 | 23 | - | – | |
| MobiDBLite | 315 | 341 | 27 | - | – | |
| PANTHER | 334 | 885 | 552 | 3.4E-265 | – | |
| PANTHER | 334 | 885 | 552 | 3.4E-265 | – | |
| Pfam | 344 | 437 | 94 | 5.9E-32 | ||
| Coils | 392 | 412 | 21 | - | – | |
| Pfam | 508 | 602 | 95 | 5.1E-22 | ||
| MobiDBLite | 761 | 782 | 22 | - | – | |
| Coils | 824 | 844 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0376300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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