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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0381000 |
| Transcript ID | LotjaGi1g1v0381000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Flotillin-like protein 1; TAIR: AT5G25250.1 SPFH/Band 7/PHB domain-containing membrane-associated protein family; Swiss-Prot: sp|D2XNQ8|FLOT1_MEDTR Flotillin-like protein 1; TrEMBL-Plants: tr|V7AXM0|V7AXM0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0381000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86332422..86335657) extracted from Lotus japonicus Gifu genome v1.2.
CTGCTGTATATATACATATCCATTGGTTCATTTATTTCTAGTCTTTTCTATTATCACTTCTAGCTTTTCACATCTCACAT ATACATCACTCTTTGGGGAAAAAGAAGGAACAAACATGTATAAGGTAGCAAAAGCATCAGAATGTCTGGCCATCACAGGC GTTGGAATCAATGACATAAAGCTGGCAAAGAAATCATGGATCCTCCCCGGCCAATCCTGCACCGTTGTTGACCTCACTCC GGTGAACTACACCTTCGAGGTCCAAGCCATGAGCGCCGAGAAGCTCCCTTTTAACCTCCCGGCCGTCTTCACAATCGGCC CCAGGGTCGATGATGATGAAAGCCTCCTCAAATATGCCAAGCTCATCTCCAAACATGACAAGCTCTCCAACCACATCAAT GAGCTCGTCCAGGGCATCATCGAGGGCGAGACACGTGTTCTCGCCGCCTCAATGACTATGGAGGAGGTTTTCAAAGGTAC AAAAGAGTTCAAGAAGGAAGTGTTCGGGAAGGTGCAGCTCGAGCTAAACCAATTCGGCCTTCTCATCTACAATGCCAACG TGAAGCAACTCGTGGATGTCCGTGGTCATGAGTACTTCTCTTACTTGGGCCAGAAGACACAAATGGAGGCCGCAAACCAA GCTAAGGTAAGAAACCCTTAACCTTCAACCTTAAAATCAATTGGTTCTAAAATGTGATATAGTTTTTTTTCTTTGGCAAA AGGTGGATGTGGCTGAAGCGAGGATGAAAGGGGAGGTAGGGGCGAAGTTGAGGGATGGGCAAACACTTCAAAATGCGGCA AAGATTGATGCGGAGACAAAGATCATAGCAACACAGAGGCAAGGGGAGGGGCAGAAGGAGGAGATAAAGGTGAGGACAGA GGTGAAGGTGTATGAGAATCAAAAGGAGGCTGACGTGGCACAGGCTAACTCTGAGCTTGCTAAGAAGAAGGCTGCATGGG CGCAAACGGCCCAAGTGGCAGAGGTGGAGGCCGCAAAGGCGGTGGCGCTCAGGGAGGCAGAGTTGCAAGGGGAGGTGGAG AGGATGAATGCTGTCACGAGGACTGAGAAGCTTAAGGCTGATTTCCTCACCAAGGCAAGCGTGGAGTATGAAACCAAGGT ATTATATGACCAGTTCATCATTCATTTGTTCTACATAAATAATTACTATTAATTACCAATGTTTTTAAAATCGGACTGGT TATTGAACCTGTGGATTTAAACCGTTTTTATAAAATACCAACGGTTGAAAAGAATAGTTTAAAAATATATCACGGCAAAC TGAAGAACTTGATGAAAAAAATTTAAGGAGCTTGATAAGTTTTTTCCTTAATTATATGGGTCATTCATTAACCTTGATCA TTGGTGTGTGTATATGCTTTTAATTTGATTTTTTTTTCCTGAAAGCAGAACATTTTATTGAATTCAGCATGAGATCAACT TTCTCATGATATAGGTGAAAAGAAAAACAAGTACTGAATATCTTTAAAGCTCTAGAATCCTCCCCAAATTAACATGTTGG CTTGATACAAATCAGAAAATACCATTAACAACACTATTGTTAAGGTGGTGCCATCAATCTTGCTAATTGCACTGTCAACA GAATAAATATATACACTGATTTTTCAGGTTCAGCTACCAATTGACAATCACATTAGACTCTATTAAAGAGATGCCTTACC TCTATACAGCTCACCTCCTCTTTCAGTGATTCAATGCAATTAGGATAGTTCAAAGAGTTTCCAAGTACGGTTTACTCTAT TCTTCACCCAGCCCACCGCAAGTGAAGAATCACTTTCTATTAAAACGTACTTAAGGGATTTTTAGGTATCTGTGTTTAGA CATAAACGGTAATTACTTTGTGTGTATTTAAAATTGGGTTGTTCTTGCATAGGTACAAGAGGCCAATTGGGATCTATACA AGAAACAAAAATCAGCTGAAGCAATTCTGTTTGAGAAGCAGAAAGAGGCAGAAGCACAGAAAGCATTAGCAGAAGCAGCA TTTTACACTCGCCGGCAAGCAGCAGAAGCAGAGTTAGTCTCAAAGAAAAAAGAGGCAGAGGGGCTTATAGCAATTGGTCA AGCCCAAGCAGCATATCTAAAGTCACTTCTGGATGCACTGGGTGGAAGCTATGCAGCTCTAAGAGACTACTTGATGATAA ATGGTGGCATGTTTCAAGAACTTGCAAAAATCAATGCTGAGGGAATTCGCGGACTTCAGCCCAAGATTAGTATTTGGAAT AATGGTAATGGTGGTGGAGAAATCGCTGATGGAAATGGTGTCATTGGTATGAATGAGGTTGCTGGTGTCTACAAGATGTT GCCACCTCTATTCAAGACAGTTCATGAGCAAACTGGTATGCTGCCACCAGCTTGGATGGGAACCTTTTCTGACAAAACTT CTTAGCCTCTCCTCTCCCACATTTTGGTTTTAATAATGAATTAATGATCATAATCATTTTATAGTTAGCCCTAAGAGTGA ACTATCTTAGGTGTCATAAAGAGAAGAGTGTAGCGGCAAAGAACCTTGTTGAAAAGTTTGATCAAGAGGGGTTACCTTCT GGGAAAGTTGCTGCAATGTTTAACATTGGAAGCTCATCCTTTTCTATTTATGTTCCTCCTCCTCCTTAAATTTTCATTTA TGTTCCTGTCTGGACTTTGGTTTCTGCATTCATTCTTTCTTATTCTTCCAACTCTGCAAATTTTCAAGATGCTTCTTCTA CCTCAACTTTTTTCCTTTTCCTTCTCAGTTATCTCCATCTTCAATTTTTTTTGTTTTTCTATTTTCCAACACTGAATTTC CAGTGCCTGTATGAGATAGTGTCAATTGTCAGTTAAAACTATCTTGCCTCAAATAAAATAACACTGTAAATTGAATGTAG CCAAGGCATTCATCTGAACAAGTAGCAAGTATCCTAAACATTGCAGTACACATCTCTCTTGGTCAATTTATCAAACATGT TCTGGGCGATGGACCTAAATATATCAACAAGACCCAGTAAATCAGTAATCAACCCAAGGTTGCAGATTTGGTTGTCAAGC TGATTCACTTGGGGGACAGATCACCGAACAATTATTTTTGTAAGAAAACATGGAATCACAGGATAGCAATCTCAAGATTC AAGACATTGTTCAAGTGAACACTAAATTCAAAGATAAATTAATTGAACTTGAAACAAATTGCTGGAAAAGTAAAGAAATT AAATGACTTGAAACAGAAAAGATAATTCAAATCTAT
CDS sequence (LotjaGi1g1v0381000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATAAGGTAGCAAAAGCATCAGAATGTCTGGCCATCACAGGCGTTGGAATCAATGACATAAAGCTGGCAAAGAAATC ATGGATCCTCCCCGGCCAATCCTGCACCGTTGTTGACCTCACTCCGGTGAACTACACCTTCGAGGTCCAAGCCATGAGCG CCGAGAAGCTCCCTTTTAACCTCCCGGCCGTCTTCACAATCGGCCCCAGGGTCGATGATGATGAAAGCCTCCTCAAATAT GCCAAGCTCATCTCCAAACATGACAAGCTCTCCAACCACATCAATGAGCTCGTCCAGGGCATCATCGAGGGCGAGACACG TGTTCTCGCCGCCTCAATGACTATGGAGGAGGTTTTCAAAGGTACAAAAGAGTTCAAGAAGGAAGTGTTCGGGAAGGTGC AGCTCGAGCTAAACCAATTCGGCCTTCTCATCTACAATGCCAACGTGAAGCAACTCGTGGATGTCCGTGGTCATGAGTAC TTCTCTTACTTGGGCCAGAAGACACAAATGGAGGCCGCAAACCAAGCTAAGGTGGATGTGGCTGAAGCGAGGATGAAAGG GGAGGTAGGGGCGAAGTTGAGGGATGGGCAAACACTTCAAAATGCGGCAAAGATTGATGCGGAGACAAAGATCATAGCAA CACAGAGGCAAGGGGAGGGGCAGAAGGAGGAGATAAAGGTGAGGACAGAGGTGAAGGTGTATGAGAATCAAAAGGAGGCT GACGTGGCACAGGCTAACTCTGAGCTTGCTAAGAAGAAGGCTGCATGGGCGCAAACGGCCCAAGTGGCAGAGGTGGAGGC CGCAAAGGCGGTGGCGCTCAGGGAGGCAGAGTTGCAAGGGGAGGTGGAGAGGATGAATGCTGTCACGAGGACTGAGAAGC TTAAGGCTGATTTCCTCACCAAGGCAAGCGTGGAGTATGAAACCAAGGTACAAGAGGCCAATTGGGATCTATACAAGAAA CAAAAATCAGCTGAAGCAATTCTGTTTGAGAAGCAGAAAGAGGCAGAAGCACAGAAAGCATTAGCAGAAGCAGCATTTTA CACTCGCCGGCAAGCAGCAGAAGCAGAGTTAGTCTCAAAGAAAAAAGAGGCAGAGGGGCTTATAGCAATTGGTCAAGCCC AAGCAGCATATCTAAAGTCACTTCTGGATGCACTGGGTGGAAGCTATGCAGCTCTAAGAGACTACTTGATGATAAATGGT GGCATGTTTCAAGAACTTGCAAAAATCAATGCTGAGGGAATTCGCGGACTTCAGCCCAAGATTAGTATTTGGAATAATGG TAATGGTGGTGGAGAAATCGCTGATGGAAATGGTGTCATTGGTATGAATGAGGTTGCTGGTGTCTACAAGATGTTGCCAC CTCTATTCAAGACAGTTCATGAGCAAACTGGTATGCTGCCACCAGCTTGGATGGGAACCTTTTCTGACAAAACTTCTTAG
Protein sequence (LotjaGi1g1v0381000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYKVAKASECLAITGVGINDIKLAKKSWILPGQSCTVVDLTPVNYTFEVQAMSAEKLPFNLPAVFTIGPRVDDDESLLKY AKLISKHDKLSNHINELVQGIIEGETRVLAASMTMEEVFKGTKEFKKEVFGKVQLELNQFGLLIYNANVKQLVDVRGHEY FSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLRDGQTLQNAAKIDAETKIIATQRQGEGQKEEIKVRTEVKVYENQKEA DVAQANSELAKKKAAWAQTAQVAEVEAAKAVALREAELQGEVERMNAVTRTEKLKADFLTKASVEYETKVQEANWDLYKK QKSAEAILFEKQKEAEAQKALAEAAFYTRRQAAEAELVSKKKEAEGLIAIGQAQAAYLKSLLDALGGSYAALRDYLMING GMFQELAKINAEGIRGLQPKISIWNNGNGGGEIADGNGVIGMNEVAGVYKMLPPLFKTVHEQTGMLPPAWMGTFSDKTS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 475 | 474 | 2.7E-230 | – | |
| PANTHER | 2 | 475 | 474 | 2.7E-230 | ||
| Pfam | 26 | 183 | 158 | 4.0E-18 | ||
| CDD | 28 | 175 | 148 | 1.11839E-34 | – | |
| SUPERFAMILY | 33 | 172 | 140 | 4.84E-18 | ||
| Gene3D | 38 | 155 | 118 | 2.4E-18 | – | |
| Coils | 235 | 255 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0381000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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