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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0381700 |
| Transcript ID | LotjaGi1g1v0381700.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial group I intron splicing factor CCM1; TAIR: AT2G28315.1 Nucleotide/sugar transporter family protein; Swiss-Prot: sp|Q8K5C0|GRHL2_MOUSE Grainyhead-like protein 2 homolog; TrEMBL-Plants: tr|G7JAG4|G7JAG4_MEDTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0381700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86466464..86469481) extracted from Lotus japonicus Gifu genome v1.2.
ATTGATTTAAATCACGATCCAGTATACAATATTACGATATCATTAAAATTTAATCTTATAATTAATACTACTATTAAAGA ATAAACTATGTTTAACTCTTGCGAATAGAAAAAACTCTTTGCCCAACCCCCTACCGCTTAGTGCGTTGACTGTGGGACGA GGGATTAGTCTCACTGCTGTCGACCTTACGCATAACGACCAAGAAAAAAAAGAGAGAATAAACTATGTTTAGGGGGGGAA GAAGTATTAATATAAGACTTACGTGGACTCCCTCCATTGAATGGCTGGTCCTTGAATTAATAGACTGACAGTTGAGTTTG CGTTTGGTTTCTCTTCCTTCCTTCTTTGTCTTTTCTGTTTCATCTCCCATTCTTCACGTAATTTCCAGCACAAACCAAAC TCACTCCCTCACTTCAATTCAATTTCCACCCTCTTCACATGGACGATCCTCCTTCCAAACACCGCATCCTCACTCTCCTC ACCGCTCTCCTCGAAGCATCCAAAGATCTCCACACCAAAACCACCCCCTTCTCCACCCTCAACCCAGACTCCATTGACAC TCTCCTCAACCTCGAAACCAAAGCAATCACCGTCTTCTCAACCGACCCAAACCTCCACCCCCTCACCCACACCCTCTCCA CCCTCAAAACCCTCATCGAGAATCTCCACAGCTGTCAAGGCTACAACCCGAACTCCCTCCTCCGCCGCCACATCACCACC TACAAAATCTCCCAAACCGCCATCACATTCGAGGCCGAAATCCAAGCCTACATCGACCGCGTCACCGTTCACGACCTCGT GACAACGCTACAACAGCCTCACGGTGAGGATGAGCAGGTGAACGCGCTGGTTGAGTTCGAGCAGAGGTTGGCTCAGGGTT TTGATTTGGGGTTTCAGGATCTGGTGTTGCGGGCGAAGGTGTTCACGGTTCTGGAGCGGACGTTGTTTGAGCCGCTGAGC TCGAAGAGGGTGAAGGAGGAAGCTGCGGTGGCCATTGCTGCTCTGGTAAAATTCAACAAGAATGTGTTTGTTGGGTTGGT GTTGATGGGTCCTACCATCAAGGCGTTGATAGCTATGGCTTCTACGTGTTCGGTTCAGGTTCTGACGTCGTTGGTGAGGT TCATTCGGAGTCCTTTGGTGGATGAAATTTTGTCACATGGAGAGATTCCAACGATTGTTGGGTTTTTAAGGTTACAGGAT TTGTCTCTTTGTGCTGCGGCGTTGGATTGTGTTATGGAAATTGCATACATTGGGAGGATGGAAGTGGTTGAAGCTATGTT TCAGGAGAATTTGGTGAAGATACTCATGGAGTTGCAGAGGAAGGGTAGTGAAAGTGGGGATTCTTCATATGATGTGGAGG AGAACAGAGGAAGAGAAAAATATGAGGGTGTGGAGGAGTTTGATGCTGTTTTCGCTGGTTGTGTTTCGAGGTTTGCTATT CAATTGGAAGTGGGGGAAGGTTTGACATCTGAGGAGAAAACAGAGGTGAAATTGGAGGTATTGAAGATGGTGAAGAAGGC TTCTCAGTCAGATGCAGAGTGCGCCACCGTTAGCGCCGAGATACTGTGGGGTTCTACGCCATAAAAAGGGTGCTTGCTTT GGTGTTTATTGCCAGAACTCATCATTTTGGGCTCCACAAGGCCATGATGCTTGCGAGGTGCACTCTCATTAGTCATTTCT CTACTTAAATGCTGAGGGTGTGGTGGGGTTTAAAGGTTTCTCGTCTGCAAATGGTTTAATTTGGTTGGTTTTGTGGGACA CTATCTTAAATGGTGGTTATGGATAGGCTTTTTCTAGTGGTATATGTGTTGTTGTTACTTGTTAGGCCATTTTTTTTATT TGGGTATGAGTCTTGTTGTTTAGACTAGGTTAGGGTTGAGCTTTGCTGATACTATATATGTAAAAGAAAGTGAGACAAAG TGGATTTCAAGACCTACTATATGATATATACCTACTATATGATTGATTTGATTCTGATAATCTGATACTAAACAAATATA TGCACATAATACTTTTGTATGTTAGTTCAATGTGAATTTGTGTTGAGTTGAATGGGAATCTACTGATACTTTTCATTTAA TGTTGTTTATTTCTGTGGTTGCAGGAATTAGCCTTCCTCCAACGCGAGATTTGAAGAATTTTAACTTTCCCAGATCTCGT TGGCAATTCGGTGCAGCAGCGTGCAGATCTTGTAGTTTCTCCAACCAGAATTTGATGTTGTGATGGGTTGGAGATACAAG GCTGGCTTGTTCCTCATAGCCACTATCATTATCTGTTGGGAGGTAAAAAGCATTCTCATTCTAAGTTTCCTCATTGCCCC CTTTCATTGAGTTTCCATGGTTGATCTCTAGGTTTCTTTAATACTAGTTGAATGGGACTAAATAACCCTTTGGTGTGTAT GCTACTATGTTAACCAAATAAGCAAAAAAGGATACAAGTTATTGTTTTAACTAAATTTGATTTGATTTTGAAGCTTTGCT GAATGGAGTCTTTCTTTACAGGGTATTTTACAAGCAATAAGCAGCCATTTGCACTAACATATCTTGGAGCTTCTCTTATG GTTGTGGCGTAGTGTTCCTCCCTATAGCATTCATTAAGGACTGGTTTTATACCTTGCTTAAACGCTGGTCTTCTAAAAGT GGTAAAAATTTAGAACGCATAGATGATTTTTCTGTCAGGGTTAGCTCTCTCTCAAAGGCAACTGAGTGCAGAAAAACTTT GAACTGGAACTGGGGAGTGTGATTCTAAAAGATAGTGATTTAGACCCTTAACTCTTGCAGAAGTGAAGGTTTATGACGCT GTATATGTTTTTAAGTTCCAACTAACTAACTATAGTTGCCACAACTATTGATTAGTTACAATGAAGATATGTGCTCTTAA CTCCATGAGGTTGGGGCATATATGTCAAAGTGACCTATTTAGATGTGTGAATTGAGTTAGAGATATTGGTATATTAAGGA CATCATCTAAATGTTGATTGGTCTTCACATGAATGTGTTTCAAAAGTCTATAATTGAC
CDS sequence (LotjaGi1g1v0381700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGATCCTCCTTCCAAACACCGCATCCTCACTCTCCTCACCGCTCTCCTCGAAGCATCCAAAGATCTCCACACCAA AACCACCCCCTTCTCCACCCTCAACCCAGACTCCATTGACACTCTCCTCAACCTCGAAACCAAAGCAATCACCGTCTTCT CAACCGACCCAAACCTCCACCCCCTCACCCACACCCTCTCCACCCTCAAAACCCTCATCGAGAATCTCCACAGCTGTCAA GGCTACAACCCGAACTCCCTCCTCCGCCGCCACATCACCACCTACAAAATCTCCCAAACCGCCATCACATTCGAGGCCGA AATCCAAGCCTACATCGACCGCGTCACCGTTCACGACCTCGTGACAACGCTACAACAGCCTCACGGTGAGGATGAGCAGG TGAACGCGCTGGTTGAGTTCGAGCAGAGGTTGGCTCAGGGTTTTGATTTGGGGTTTCAGGATCTGGTGTTGCGGGCGAAG GTGTTCACGGTTCTGGAGCGGACGTTGTTTGAGCCGCTGAGCTCGAAGAGGGTGAAGGAGGAAGCTGCGGTGGCCATTGC TGCTCTGGTAAAATTCAACAAGAATGTGTTTGTTGGGTTGGTGTTGATGGGTCCTACCATCAAGGCGTTGATAGCTATGG CTTCTACGTGTTCGGTTCAGGTTCTGACGTCGTTGGTGAGGTTCATTCGGAGTCCTTTGGTGGATGAAATTTTGTCACAT GGAGAGATTCCAACGATTGTTGGGTTTTTAAGGTTACAGGATTTGTCTCTTTGTGCTGCGGCGTTGGATTGTGTTATGGA AATTGCATACATTGGGAGGATGGAAGTGGTTGAAGCTATGTTTCAGGAGAATTTGGTGAAGATACTCATGGAGTTGCAGA GGAAGGGTAGTGAAAGTGGGGATTCTTCATATGATGTGGAGGAGAACAGAGGAAGAGAAAAATATGAGGGTGTGGAGGAG TTTGATGCTGTTTTCGCTGGTTGTGTTTCGAGGTTTGCTATTCAATTGGAAGTGGGGGAAGGTTTGACATCTGAGGAGAA AACAGAGGTGAAATTGGAGGTATTGAAGATGGTGAAGAAGGCTTCTCAGTCAGATGCAGAGTGCGCCACCGTTAGCGCCG AGATACTGTGGGGTTCTACGCCATAA
Protein sequence (LotjaGi1g1v0381700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDPPSKHRILTLLTALLEASKDLHTKTTPFSTLNPDSIDTLLNLETKAITVFSTDPNLHPLTHTLSTLKTLIENLHSCQ GYNPNSLLRRHITTYKISQTAITFEAEIQAYIDRVTVHDLVTTLQQPHGEDEQVNALVEFEQRLAQGFDLGFQDLVLRAK VFTVLERTLFEPLSSKRVKEEAAVAIAALVKFNKNVFVGLVLMGPTIKALIAMASTCSVQVLTSLVRFIRSPLVDEILSH GEIPTIVGFLRLQDLSLCAAALDCVMEIAYIGRMEVVEAMFQENLVKILMELQRKGSESGDSSYDVEENRGREKYEGVEE FDAVFAGCVSRFAIQLEVGEGLTSEEKTEVKLEVLKMVKKASQSDAECATVSAEILWGSTP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 9 | 9 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| PANTHER | 5 | 381 | 377 | 2.2E-161 | – | |
| PANTHER | 5 | 381 | 377 | 2.2E-161 | – | |
| Phobius | 10 | 18 | 9 | - | – | |
| Phobius | 19 | 22 | 4 | - | – | |
| Phobius | 23 | 381 | 359 | - | – | |
| Gene3D | 60 | 302 | 243 | 7.5E-9 | ||
| SUPERFAMILY | 116 | 297 | 182 | 1.77E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0381700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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