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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0382400 |
Transcript ID | LotjaGi1g1v0382400.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Adenine phosphoribosyltransferase-like protein; TAIR: AT5G11160.1 adenine phosphoribosyltransferase 5; Swiss-Prot: sp|Q9LFP0|APT5_ARATH Adenine phosphoribosyltransferase 5; TrEMBL-Plants: tr|I3S3L6|I3S3L6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0382400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86580359..86584166) extracted from Lotus japonicus Gifu genome v1.2.
GTGCGACATAGATGTATGAAAGTCGCGTGGGGGGTGAGCAGTGATGTGAGAATGTGTTGGAGTCAAGTCGGGGTGAGGAA ATAAATAACCTCCTCAAACTAACTCTCCATACTTCAATTCAACCCAACCAAACCAATTCAATTCAACTCTCCTTACCACT TCATCCTCTCCCAATCCCCACACACAAACACTACACAACAAAACATCATCACACTTTCGGAGGGAAAAACCTTTCCCTTC TCTTCTTCTCCTCCTTCTCCTCAACCCAACAATGTTCGCTTCAGAAAATGGGCTTAAAGGAGACCCAAGACTTCAAGCAA TCACCAAAGCCATCACAGTTGTCCCTCACTTCCCCAAAAAGGGTCTCTAACTCTCTCTCTCTCTTCTCTCTTTGTTTTTC CAATTATTTTATTTCATCATTCTTATGCTGTCTCTGTTCCCTCTTCAATTCACTCACATGGCCTTTGTTTTCTTTCAGAA CTTTTGTCGAACAGATAACCTACTATTCATTTTTTTAATGTTGGGTAATTTGCAGGAATCATGTTTCAAGACATCACGAC ATTGTTGCTAGATCATAAGGCGTTTAAAGATACTATCGACATTTTTGTCGATCGTTACAGAGACATGCACATTTCTGTTG TGGCTGGTAGTACCCTCACTCTACTCTTCAGCTACTACTTTTTTTTCTTATTGTTTCACAGTAAAAATAAGGTAAATTTA ACAAGGTGAAGCTAAAATTTAATGGGGTTGTTAAAAGTAGCTCAAAGGGGTCTTTTTTCTATTTTTCTGTTGTAGTACTA GTAGTAATATTCAAGAATAGAGCTTGGTTTATGATTCTGATTTTTTTAATTTGATTGATAAATTGATGATGATTAGTCTA CATATTATGTGTTTAGGGTTTACATTTATGAGCTATTGTTATGGGATTTGGCCTATGGTTGGTTAACATATTGCTATGGA TTACATGTAGGCATTGAAGCCAGGGGATTCTTGTTTGGTCCCTCAATTGCATTGGGTATCGGTGCTAAGTTTGTTCCCCT GCGAAAACCTCGGAAGCTGCCAGGTAATTTGGTTGAATGTTGATGCATAAACTACATCTAAACTTAATTAGTGTTAAATG AAAGTTGAAAGTGCTGAAACTGGTGTTGCTGATCTGCATTGAGCAATCTTATCAACATATCTACTCTTTTTTGTGATCCT AGATTATCAAATTGGGTTATGGCTGCATTCAATTTATGAAAACTGGCTGAAAATGCTATGTATTGAGTGATCAAGATTGC ATGAATCACAATTGCACGAGACGGGGAAAATGTATCTTTTTTATTTAAAGTTCACTAACAGGGGCTAATTAGGATAAATT GTATGCTTTATAATAGGGATTTCAAAATAATTTAGCTGTAGTAGCTTATTTCAGCTTACTTTCGTGTACTAAATAACTAA GCACAATCATCTGAGAGTAAGGTGGAGGTAACTTTTGGAGCTGTATATATCTACTTAAAGTTTTAGTCTCATTGCTGAAC TGTGCCTATACATTATGCCTAAACTTTGATATACTTTATGTTTAGGTGAGGTATTTTCTGAAAAATATTCTCTAGAATAT GGCACTGATTGTTTGGAGCTGCATGTTGATGCTGTCCAGCCCGGTGAACGGGCCATAGTTATTGATGATTTGGTGGCCAC AGGTGGAACTCTGTCAGCAGGAGTAAAACTTCTAGGTGATTTACAAGCTCTTTTCTCATGCTTATTTATTTCAGTTATGA TTGTTCAACGTATATGGTCCCAAATGCGCTACATGGTTTCTTTCAACTTAATTTGTAGAACGTGCTCATGCGGAAGTAGT CGAATGTGCTTGTGTGATTGGTGTGCCTGATGTTAAGGTAATGTCTAACCTTTTATAAGTTATGTTTGCTTTGCTAGTTA ATCTCAGAAGTTTCTATCTTATTATAGGTAATCCTACAGCTAAAAGTTCTTGACCAAAAACGACTGAAAAAATAAACAAA TTAAAATTCACGTGTTGTTTCTCATATTGACAGCCTAATGGACTTTAATTTGTAGGACATAATCTGTCCCGTGATTTTAA GATCATGAGTGACCAATTTATATCATTCTAGATGTGCTTATAGTTATTACAATATTTTTAGCTTCTAAATAATCTCAATA ACCCTGAAAAGGGACTTGTACAGGCCAATATAGTTACAACATAATGCTGGTAAAAGGAATTATCTATTACTAGTTAGAAC CTAAATTACTTAGGTCTAGAATTCTAGATTGCAGAATTTATTTTAATGTTAACTCATTGAAGATGCCAACCTTTCTAAGT GTCATTATTGAAATGAGACTGTCTCCTTCTATTTTGTGTACTATCTGATTTTTCCCAATTCTTGTTAATATATAATAGTA CGAGTATTTATGTTTGTAGGGATAAATTGTCTTTAGACACAAAAGTATCTCTTTCTCTTCTCATTTTAATTATCATACCA AACAATCTACAAAATCTACCCTCTTTCTTATCTTTCTCTCTACACATCTTCCCGCTCTCCTAACCCAAACAAAGTTCTAA GGAAGAAAGCAAAAAGTCCTTCTACCTCTACCTTACTTTGTACCTAACCTGAAACTTTGTGGATAAATATCCACTGGTTT GTGGAGGTTGTACCTTGCTTGTTACACGTGAATTTTCCTTCTATAAGTTCTTATTTTCCTGAAATCATGGAAATGCAGTG TTCATTATGCTTTCTCTTTCAGGGACAGTGCAGGCTCATTGGAAAGCCACTTTATGTCCTTGTGGAGCCCCGTCAAGTAG ATAAATGTTTTTGAGGTACGTCACTGTATCCTGAAGTGGAAATTCTGATGGTACAATTTGCATAACATGATTGTGTTTGG AATAACTGTTCATTTTGCTCCATGATCTCAATGTCAGCAGATTACAAACATTCTTTAGCTCTTTTTAGTGGCTTTTCGAC TCCTGAAAACTGTTATTATGCCAATGTGTTTAACTGGACCAAAAGTTAGCTAGTGCTCTGAAGACCTTGCCAAAAAGGGA CCGTCCTACACTTCCCATGTTTGGTTGTGTCTTTTGATTTGTACGAGAGATTGCTTCCACCCATGGAAAAGACCAATGAT GAGTCGAACTTTGTTTAACAGTAGTTTTGCCCTTTTTTTGGTATTATCACTCTAAATTGAGTTTGGTTTTGAAATCTCTA ACTTTTTCTCCTATCAGGATAACATTTTGTTTTCCTTCTAACTGTATATACATTCATGCAGATATGAATCATGTGGATGT TAAATGTCAATTCTTCTCCGACTTACATGCAAGAGAATGCCTCATCTGAGAAACACAGGCCATGATGTGAGTCCCTAGTT TCAGCTAATGGAGCTGCGTCCTGAGAATGATTATCCTGGAAATTGTTCCCCTTATATCTTAATTTGGTTGTACATGTTAG GCTATCATGTATTGCTCAGATTCAAACAAGCATTAAGGAATGGATGGATTTTTCTGTCATTAAATCAGCAAAATGTCAAT TTCAGGCCTCATTTCTTTCTTTATGTTTGGAAAGTTCAAATATAGGTGATGGTTTGATTCGATTTCAACCCAATTTGTTT TTTTTATTTATCTCGAACTTATAATAGAAATTAGGGATTTTACTCTAAAAGTGAGTCACATTAAATGTGGTTAGATTTTC ATTAAACACAACGTGGATTTATGTTGAACTTGATGAGGCAAAACCCTATTTTTTTCTATCCGTGTTAAATTAAACATGAA AAATTCTTGCACTAACATGAATCAAAACATACACTAAATAATAATGGC
CDS sequence (LotjaGi1g1v0382400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCGCTTCAGAAAATGGGCTTAAAGGAGACCCAAGACTTCAAGCAATCACCAAAGCCATCACAGTTGTCCCTCACTT CCCCAAAAAGGGAATCATGTTTCAAGACATCACGACATTGTTGCTAGATCATAAGGCGTTTAAAGATACTATCGACATTT TTGTCGATCGTTACAGAGACATGCACATTTCTGTTGTGGCTGGCATTGAAGCCAGGGGATTCTTGTTTGGTCCCTCAATT GCATTGGGTATCGGTGCTAAGTTTGTTCCCCTGCGAAAACCTCGGAAGCTGCCAGGTGAGGTATTTTCTGAAAAATATTC TCTAGAATATGGCACTGATTGTTTGGAGCTGCATGTTGATGCTGTCCAGCCCGGTGAACGGGCCATAGTTATTGATGATT TGGTGGCCACAGGTGGAACTCTGTCAGCAGGAGTAAAACTTCTAGAACGTGCTCATGCGGAAGTAGTCGAATGTGCTTGT GTGATTGGTGTGCCTGATGTTAAGGGACAGTGCAGGCTCATTGGAAAGCCACTTTATGTCCTTGTGGAGCCCCGTCAAGT AGATAAATGTTTTTGA
Protein sequence (LotjaGi1g1v0382400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFASENGLKGDPRLQAITKAITVVPHFPKKGIMFQDITTLLLDHKAFKDTIDIFVDRYRDMHISVVAGIEARGFLFGPSI ALGIGAKFVPLRKPRKLPGEVFSEKYSLEYGTDCLELHVDAVQPGERAIVIDDLVATGGTLSAGVKLLERAHAEVVECAC VIGVPDVKGQCRLIGKPLYVLVEPRQVDKCF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 187 | 187 | 2.8E-111 | – | |
PANTHER | 1 | 187 | 187 | 2.8E-111 | – | |
Gene3D | 8 | 187 | 180 | 2.3E-60 | ||
Hamap | 17 | 184 | 168 | 32.897 | ||
TIGRFAM | 18 | 182 | 165 | 6.1E-59 | ||
SUPERFAMILY | 20 | 176 | 157 | 2.88E-44 | ||
Pfam | 42 | 165 | 124 | 3.6E-15 | ||
CDD | 51 | 183 | 133 | 2.17263E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Adenine phosphoribosyltransferase activity | Catalysis of the reaction: AMP + diphosphate = adenine + 5-phospho-alpha-D-ribose 1-diphosphate. | ||
Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
Biological process | Adenine salvage | Any process that generates adenine, 6-aminopurine, from derivatives of it without de novo synthesis. | ||
Biological process | Nucleoside metabolic process | The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine). |
Expression pattern of LotjaGi1g1v0382400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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