Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PF00156
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 32 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.025s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0062759.1
n.a. PREDICTED: uridine 5'-monophosphate synthase-like [Glycine max] gi|356548887|ref|XP_003542830.1| chr0 21146844 21151064 -
2 domain predictions
1 GO term
Lj0g3v0231859.1
n.a. hypoxanthine phosphoribosyltransferase [Arachis hypogaea] gi|194466195|gb|ACF74328.1| chr0 120290516 120291046 +
2 domain predictions
1 GO term
Lj0g3v0244049.1
n.a. Amidophosphoribosyltransferase [Medicago truncatula] gi|357473601|ref|XP_003607085.1| chr0 126647344 126649762 -
2 domain predictions
1 GO term
Lj0g3v0341109.1
n.a. PREDICTED: adenine phosphoribosyltransferase 2-like [Cicer arietinum] gi|502132410|ref|XP_004501346.1| chr0 178709291 178712937 -
2 domain predictions
1 GO term
Lj1g3v1720200.1
n.a. PREDICTED: adenine phosphoribosyltransferase 1, chloroplastic-like isoform X5 [Cicer arietinum] gi|502132789|ref|XP_004501529.1| chr1 20271203 20274484 +
2 domain predictions
1 GO term
Lj1g3v1720200.2
n.a. PREDICTED: adenine phosphoribosyltransferase 1, chloroplastic-like isoform X5 [Cicer arietinum] gi|502132789|ref|XP_004501529.1| chr1 20271203 20274484 +
2 domain predictions
1 GO term
Lj2g3v1415430.1
n.a. PREDICTED: ribose-phosphate pyrophosphokinase 3, mitochondrial-like [Glycine max] gi|356497736|ref|XP_003517715.1| chr2 22452976 22457710 -
2 domain predictions
1 GO term
Lj2g3v2002270.1
n.a. PREDICTED: adenine phosphoribosyltransferase 1, chloroplastic-like [Cicer arietinum] gi|502160202|ref|XP_004511667.1| chr2 30227983 30232795 -
2 domain predictions
1 GO term
Lj6g3v0920980.1
n.a. Ribose-phosphate pyrophosphokinase [Medicago truncatula] gi|357491519|ref|XP_003616047.1| chr6 9520090 9523394 +
2 domain predictions
1 GO term
LotjaGi1g1v0360900.1
n.a. Adenine phosphoribosyltransferase-like protein; TAIR: AT1G27450.1 adenine phosphoribosyl transferase 1; Swiss-Prot: sp|P31166|APT1_ARATH Adenine phosphoribosyltransferase 1, chloroplastic; TrEMBL-Plants: tr|A0A075EAV1|A0A075EAV1_ASTME Adenine phosphoribosyl transferase; Found in the gene: LotjaGi1g1v0360900 LjG1.1_chr1 83580747 83584598 +
2 domain predictions
1 GO term
LotjaGi1g1v0360900.2
n.a. Adenine phosphoribosyltransferase-like protein; TAIR: AT1G27450.1 adenine phosphoribosyl transferase 1; Swiss-Prot: sp|P31166|APT1_ARATH Adenine phosphoribosyltransferase 1, chloroplastic; TrEMBL-Plants: tr|A0A075EAV1|A0A075EAV1_ASTME Adenine phosphoribosyl transferase; Found in the gene: LotjaGi1g1v0360900 LjG1.1_chr1 83580747 83584598 +
2 domain predictions
1 GO term
LotjaGi1g1v0360900.3
n.a. Adenine phosphoribosyltransferase-like protein; TAIR: AT1G27450.1 adenine phosphoribosyl transferase 1; Swiss-Prot: sp|P31166|APT1_ARATH Adenine phosphoribosyltransferase 1, chloroplastic; TrEMBL-Plants: tr|I3SH66|I3SH66_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0360900 LjG1.1_chr1 83580812 83584469 +
2 domain predictions
1 GO term
LotjaGi1g1v0382400.1
n.a. Adenine phosphoribosyltransferase-like protein; TAIR: AT5G11160.1 adenine phosphoribosyltransferase 5; Swiss-Prot: sp|Q9LFP0|APT5_ARATH Adenine phosphoribosyltransferase 5; TrEMBL-Plants: tr|I3S3L6|I3S3L6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0382400 LjG1.1_chr1 86580359 86584166 -
2 domain predictions
1 GO term
LotjaGi1g1v0382400.2
n.a. Adenine phosphoribosyltransferase-like protein; TAIR: AT5G11160.1 adenine phosphoribosyltransferase 5; Swiss-Prot: sp|Q9LFP0|APT5_ARATH Adenine phosphoribosyltransferase 5; TrEMBL-Plants: tr|I3S3L6|I3S3L6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0382400 LjG1.1_chr1 86581219 86583895 -
2 domain predictions
1 GO term
LotjaGi1g1v0382400.3
n.a. Adenine phosphoribosyltransferase-like protein; TAIR: AT5G11160.1 adenine phosphoribosyltransferase 5; Swiss-Prot: sp|Q9LFP0|APT5_ARATH Adenine phosphoribosyltransferase 5; TrEMBL-Plants: tr|I3S3L6|I3S3L6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0382400 LjG1.1_chr1 86582194 86583895 -
2 domain predictions
1 GO term
LotjaGi1g1v0562400.1
n.a. Amidophosphoribosyltransferase; TAIR: AT2G16570.1 GLN phosphoribosyl pyrophosphate amidotransferase 1; Swiss-Prot: sp|P52418|PUR1_SOYBN Amidophosphoribosyltransferase, chloroplastic; TrEMBL-Plants: tr|A0A0L9V6R9|A0A0L9V6R9_PHAAN Amidophosphoribosyltransferase; Found in the gene: LotjaGi1g1v0562400 LjG1.1_chr1 109447034 109449850 +
2 domain predictions
1 GO term
LotjaGi1g1v0562400.2
n.a. Amidophosphoribosyltransferase; TAIR: AT2G16570.1 GLN phosphoribosyl pyrophosphate amidotransferase 1; Swiss-Prot: sp|P52418|PUR1_SOYBN Amidophosphoribosyltransferase, chloroplastic; TrEMBL-Plants: tr|A0A0L9V6R9|A0A0L9V6R9_PHAAN Amidophosphoribosyltransferase; Found in the gene: LotjaGi1g1v0562400 LjG1.1_chr1 109447181 109449265 +
2 domain predictions
1 GO term
LotjaGi2g1v0324200.1
n.a. Ribose-phosphate pyrophosphokinase; TAIR: AT1G10700.1 phosphoribosyl pyrophosphate (PRPP) synthase 3; Swiss-Prot: sp|Q9XGA0|KPRS3_SPIOL Ribose-phosphate pyrophosphokinase 3, mitochondrial; TrEMBL-Plants: tr|I1JC62|I1JC62_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0324200 LjG1.1_chr2 79914554 79921272 -
2 domain predictions
1 GO term
LotjaGi2g1v0425300.1
n.a. Adenine phosphoribosyltransferase-like protein; TAIR: AT4G22570.1 adenine phosphoribosyl transferase 3; Swiss-Prot: sp|Q9SUW2|APT3_ARATH Adenine phosphoribosyltransferase 3; TrEMBL-Plants: tr|V7CJ62|V7CJ62_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0425300 LjG1.1_chr2 92304021 92309475 -
2 domain predictions
1 GO term
LotjaGi2g1v0425300.2
n.a. Adenine phosphoribosyltransferase-like protein; TAIR: AT4G22570.1 adenine phosphoribosyl transferase 3; Swiss-Prot: sp|Q9SUW2|APT3_ARATH Adenine phosphoribosyltransferase 3; TrEMBL-Plants: tr|A0A0S3T6I9|A0A0S3T6I9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0425300 LjG1.1_chr2 92305211 92309228 -
2 domain predictions
1 GO term
LotjaGi2g1v0425300.3
n.a. Adenine phosphoribosyltransferase-like protein; TAIR: AT4G22570.1 adenine phosphoribosyl transferase 3; Swiss-Prot: sp|Q9SUW2|APT3_ARATH Adenine phosphoribosyltransferase 3; TrEMBL-Plants: tr|A0A0S3T6I9|A0A0S3T6I9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0425300 LjG1.1_chr2 92305211 92309228 -
2 domain predictions
1 GO term
LotjaGi2g1v0425300.4
n.a. Adenine phosphoribosyltransferase-like protein; TAIR: AT4G22570.1 adenine phosphoribosyl transferase 3; Swiss-Prot: sp|Q9SUW2|APT3_ARATH Adenine phosphoribosyltransferase 3; TrEMBL-Plants: tr|K7KN25|K7KN25_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0425300 LjG1.1_chr2 92305352 92309228 -
2 domain predictions
1 GO term
LotjaGi2g1v0425300.5
n.a. Adenine phosphoribosyltransferase-like protein; TAIR: AT4G22570.1 adenine phosphoribosyl transferase 3; Swiss-Prot: sp|Q9SUW2|APT3_ARATH Adenine phosphoribosyltransferase 3; TrEMBL-Plants: tr|A0A0S3T6I9|A0A0S3T6I9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0425300 LjG1.1_chr2 92305352 92309228 -
2 domain predictions
1 GO term
LotjaGi2g1v0425300.6
n.a. Adenine phosphoribosyltransferase-like protein; TAIR: AT4G22570.1 adenine phosphoribosyl transferase 3; Swiss-Prot: sp|Q9SUW2|APT3_ARATH Adenine phosphoribosyltransferase 3; TrEMBL-Plants: tr|A0A0S3T6I9|A0A0S3T6I9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0425300 LjG1.1_chr2 92305809 92309228 -
2 domain predictions
1 GO term
LotjaGi3g1v0111900.1
n.a. Orotate phosphoribosyltransferase, putative; TAIR: AT3G54470.1 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); Swiss-Prot: sp|Q42586|UMPS_ARATH Uridine 5'-monophosphate synthase; TrEMBL-Plants: tr|G7IYW1|G7IYW1_MEDTR Uridine 5-monophosphate synthase-like protein; Found in the gene: LotjaGi3g1v0111900 LjG1.1_chr3 13804766 13809702 +
2 domain predictions
1 GO term
LotjaGi3g1v0111900.2
n.a. Orotate phosphoribosyltransferase, putative; TAIR: AT3G54470.1 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); Swiss-Prot: sp|Q42586|UMPS_ARATH Uridine 5'-monophosphate synthase; TrEMBL-Plants: tr|G7IYW1|G7IYW1_MEDTR Uridine 5-monophosphate synthase-like protein; Found in the gene: LotjaGi3g1v0111900 LjG1.1_chr3 13806182 13808728 +
2 domain predictions
1 GO term
LotjaGi3g1v0320200.1
n.a. Orotate phosphoribosyltransferase, putative; TAIR: AT3G54470.1 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); Swiss-Prot: sp|Q42586|UMPS_ARATH Uridine 5'-monophosphate synthase; TrEMBL-Plants: tr|A0A151RDY2|A0A151RDY2_CAJCA Uridine 5'-monophosphate synthase; Found in the gene: LotjaGi3g1v0320200 LjG1.1_chr3 67969747 67988419 +
2 domain predictions
1 GO term
LotjaGi3g1v0320200.2
n.a. Orotate phosphoribosyltransferase, putative; TAIR: AT3G54470.1 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); Swiss-Prot: sp|Q42586|UMPS_ARATH Uridine 5'-monophosphate synthase; TrEMBL-Plants: tr|A0A151RDY2|A0A151RDY2_CAJCA Uridine 5'-monophosphate synthase; Found in the gene: LotjaGi3g1v0320200 LjG1.1_chr3 67969782 67988419 +
2 domain predictions
1 GO term
LotjaGi3g1v0320200.3
n.a. Orotate phosphoribosyltransferase, putative; TAIR: AT3G54470.1 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); Swiss-Prot: sp|Q42586|UMPS_ARATH Uridine 5'-monophosphate synthase; TrEMBL-Plants: tr|A0A151RDY2|A0A151RDY2_CAJCA Uridine 5'-monophosphate synthase; Found in the gene: LotjaGi3g1v0320200 LjG1.1_chr3 67983670 67988064 +
2 domain predictions
1 GO term
LotjaGi3g1v0515700.1
n.a. Amidophosphoribosyltransferase; TAIR: AT2G16570.1 GLN phosphoribosyl pyrophosphate amidotransferase 1; Swiss-Prot: sp|Q9SI61|ASE1_ARATH Amidophosphoribosyltransferase 1, chloroplastic; TrEMBL-Plants: tr|G7JL07|G7JL07_MEDTR GLN phosphoribosyl pyrophosphate amidotransferase; Found in the gene: LotjaGi3g1v0515700 LjG1.1_chr3 93271943 93274391 -
2 domain predictions
1 GO term
LotjaGi6g1v0169000.1
n.a. Ribose-phosphate pyrophosphokinase; TAIR: AT2G42910.1 Phosphoribosyltransferase family protein; Swiss-Prot: sp|Q680A5|KPRS4_ARATH Ribose-phosphate pyrophosphokinase 4; TrEMBL-Plants: tr|G7K0V0|G7K0V0_MEDTR Ribose-phosphate pyrophosphokinase; Found in the gene: LotjaGi6g1v0169000 LjG1.1_chr6 45435693 45439777 +
2 domain predictions
1 GO term
LotjaGi6g1v0191400.1
n.a. Ribose-phosphate pyrophosphokinase; TAIR: AT2G42910.1 Phosphoribosyltransferase family protein; Swiss-Prot: sp|Q680A5|KPRS4_ARATH Ribose-phosphate pyrophosphokinase 4; TrEMBL-Plants: tr|G7K0V0|G7K0V0_MEDTR Ribose-phosphate pyrophosphokinase; Found in the gene: LotjaGi6g1v0191400 LjG1.1_chr6 48783971 48787195 +
2 domain predictions
1 GO term