Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0382800 |
| Transcript ID | LotjaGi1g1v0382800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin-responsive protein; TAIR: AT4G32280.1 indole-3-acetic acid inducible 29; Swiss-Prot: sp|Q93WC4|IAA29_ARATH Auxin-responsive protein IAA29; TrEMBL-Plants: tr|I1JUC1|I1JUC1_SOYBN Auxin-induced protein; Found in the gene: LotjaGi1g1v0382800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86626295..86628720) extracted from Lotus japonicus Gifu genome v1.2.
ATCTAGCTTATAATGCTGCTTCTCTTTTTGCCGACCCAACTTTCTCTTGTCTGTAACCATCCTTGTTGTACAAGACAATG GTCCTTTTCATCACTCTTCTTCACTCACACATGCACAATTGCACACATATTAACATATATATACTTACATGTCCTAAGGA TCATGTATATAATCCCAATACCTTTGAGAAAGTTACTCCATCTCTAACTTTGAAAGTTTCCCAACAATAATATATATTCA CTCCTTTGTTTCTTGTGTATCTTACTTAGCTTCTTGTGCTTCATGGAGCTTCAGTTAGCTCTGGCTCTCCCTACCCAAAA TTCCTTTGAGGGGTTTAATCCTAACAAGCCTGGCTTAATGAAATCAAAACAGATAGTGAGTTCAGAATTATGCAGGACCA GTTGTTGTTCTGAAAGCAAAAAGCATGTTAGAAACAAGCGTAGCTTCCAAGAGTCGTTTGGACATTGTGTGAAACCTTTG CCTTTACTAGTATGGAGTGGACAGCCAAATGAGGAAGATGACAATAGAAAAAAGAGGCACAGAGCATCAAACAAGTAAGT GCATCTTGTGAAGTTCTTCTACAATTGATTCTGAACAAAACTTCTGTAAGTAGCTTCTGGGTTTCAAAATTTGTTTGAGA AAAAAAAACCAATCTAAACATGCTATAATAAGTCATGTCTTGACTTGTATGTTTTCCATGTTTGCTTTAGCTCTTTTAAA ACTACTTGGTAATAAAATTTTGATCATATAAGTATCACTAGGATAAAATTGAAAATTCTCAAATGCAAGGGAACTCAAAG AACATTCATCTTTACTTTTATGATGTACTTACAGGAATGAAGAAGAAAACCATTTGGTGGGGTGGCCACCGATTAAATCA TGGAGAAACAAAGAACTTCATCCTCAGCATCCTGTAAGAGGCCAGATAAGGAATGAAAGGATGCAAGCTAATGAGAATCG AAGTAGAGGAACAAACTCTTCATATGTCAAAGTTAACATGGAAGGGGTACCAATAGGGAGGCTAATCAATTTGAGACTTT ACAACTCCTATCAAACACTTACAGATGCATTGATTAGCATGTTTGTTGGATGTAAGTGAAAATACCACTTCTTTTTTCAC GTTTTTCTGTGGGATTGTTGTGAAGTATATTTAGTGCATGTTTGAAGATACTTCTACAATTGATTTTAAAGTTTGAATTA ATTATGGGGATCTGAAGCTTATGTATGTAGCTTTTGGGTGACAATTTGATTATGAGGAAATAAAAGTTGATCTAAACATG CTATTAGTAGATTTGATTTTTAATTTGGTCTAAAGAAGTTATTATAAATGCAGACCAAACGTTTGAGGAAAATGGAGCAG GTTACACGCTCACCTTTCAAAATAAGCAAGGGGAATGGCTTCTTCCTAGACATGTTCCTTGGCAGTATGTACCAGTTTTT TAATATAAACTACATGCTTTCATTGACTACTACTTCATATAACAGAAAAAGGACAACTAACTATTTGAAGAAAAAATAGA GAGAATGTTTAGAATGTTATTATAAAAAGGTGAGATGTACAAAGAATAACTTTTGCTCAATGATTATTTTGCAGAACCTT CATTGGTACGGTGCGGCGTTTGGCGATATTGAGGAATGGAAATGAAAATATTTGACAAAGTTTATGGTATGAAGTTCTTG AAGGTCCTTGGTTCAGAATAGTATTTACTATTAACAGTTGAAGAGGTTGTAGAGAGCAAAAGCAAAATATGAAAAGTCAA ATTGCAAATTAATTGCTTTAGCTTTGATTCTTTAACTAATAAATTTGTATTGCTTCAATTACAAGTAAGCTTATCAAACA TTCGAATTTCAGTATTTGCCAAATGATCCTTTTTATGTATAAAATGGCATGAATCTAATGGACCCTGACTGAAATTTGGC CATGATCAGGAAATTGAGAGAAATTGCTTAATTTAGCGTCTATGAAGTAATCTGCATAGGAATTTCTACCTATAATTAAG CAGATGATGATGGGGTGCTAGAACTTAGAAGGATGAGATTGGACTTTGGAGTAGGATTTGAATTTTGAAGAAAGCATGAA CCAATCAAAGTGTTCCGTTAACCTTGGCCATATCTGATACTCAGCATAAATCCAGAAAGTATTCCTAATATGTGCAGAAA TGTCTCAATAGGACAAACACAACATATTTAAATGAGAACAAGGGTCTTTCAAAGTTAACCTGTTTAATATAATCCGAATA AGTATAGATAGTCTAGATACTTTATAGTCTAATAACAAAAATATCATGTACGTGGGCTAGACCACTAACTGCTATATAAT AATTTGACATTTGATTGGAAGCAAAGAAAAAGTGTGGATAATTGATATAGTAGAAAGTAAAGAAACAAATATGAATAGAT AAAGCATGTCGTGAATTTGCTGGATA
CDS sequence (LotjaGi1g1v0382800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCTTCAGTTAGCTCTGGCTCTCCCTACCCAAAATTCCTTTGAGGGGTTTAATCCTAACAAGCCTGGCTTAATGAA ATCAAAACAGATAGTGAGTTCAGAATTATGCAGGACCAGTTGTTGTTCTGAAAGCAAAAAGCATGTTAGAAACAAGCGTA GCTTCCAAGAGTCGTTTGGACATTGTGTGAAACCTTTGCCTTTACTAGTATGGAGTGGACAGCCAAATGAGGAAGATGAC AATAGAAAAAAGAGGCACAGAGCATCAAACAAGAATGAAGAAGAAAACCATTTGGTGGGGTGGCCACCGATTAAATCATG GAGAAACAAAGAACTTCATCCTCAGCATCCTGTAAGAGGCCAGATAAGGAATGAAAGGATGCAAGCTAATGAGAATCGAA GTAGAGGAACAAACTCTTCATATGTCAAAGTTAACATGGAAGGGGTACCAATAGGGAGGCTAATCAATTTGAGACTTTAC AACTCCTATCAAACACTTACAGATGCATTGATTAGCATGTTTGTTGGATACCAAACGTTTGAGGAAAATGGAGCAGGTTA CACGCTCACCTTTCAAAATAAGCAAGGGGAATGGCTTCTTCCTAGACATGTTCCTTGGCAAACCTTCATTGGTACGGTGC GGCGTTTGGCGATATTGAGGAATGGAAATGAAAATATTTGA
Protein sequence (LotjaGi1g1v0382800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELQLALALPTQNSFEGFNPNKPGLMKSKQIVSSELCRTSCCSESKKHVRNKRSFQESFGHCVKPLPLLVWSGQPNEEDD NRKKRHRASNKNEEENHLVGWPPIKSWRNKELHPQHPVRGQIRNERMQANENRSRGTNSSYVKVNMEGVPIGRLINLRLY NSYQTLTDALISMFVGYQTFEENGAGYTLTFQNKQGEWLLPRHVPWQTFIGTVRRLAILRNGNENI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 223 | 223 | 2.4E-73 | – | |
| PANTHER | 1 | 223 | 223 | 2.4E-73 | ||
| Pfam | 3 | 222 | 220 | 5.4E-34 | ||
| MobiDBLite | 73 | 95 | 23 | - | – | |
| Coils | 76 | 96 | 21 | - | – | |
| MobiDBLite | 76 | 94 | 19 | - | – | |
| SUPERFAMILY | 133 | 217 | 85 | 1.2E-7 | – | |
| Gene3D | 133 | 226 | 94 | 6.9E-24 | – | |
| ProSiteProfiles | 139 | 226 | 88 | 19.025 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0382800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…