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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0383100 |
| Transcript ID | LotjaGi1g1v0383100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein, putative; TAIR: AT5G25330.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; Swiss-Prot: sp|Q6EVZ2|TI214_NYMAL Protein TIC 214; TrEMBL-Plants: tr|G7JAJ3|G7JAJ3_MEDTR Core-2/I-branching enzyme; Found in the gene: LotjaGi1g1v0383100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86656813..86658501) extracted from Lotus japonicus Gifu genome v1.2.
CTGAGGTTTGACTATTTAACATCATGTGCTACGTGTTGTACTCTTAGGTGCATGCAGAATGAGGAGATTGGCATGGTTTC CACGTGTGCATCTAGAGAGCAGAGTACACAAGTGTCTGTCTAAACTCCCCTTCTTCCATTCCTTGCTTCCACTTGCTTTT CCATCTAAGTTACTCAACTCAAGAATCATCATCATCACTAGCTGTTTCCATTCAGCAATTGTCTTGTACTATCACATCAC AATTCAATTCAAGCACACAAATGCATAAGCGTTTTACTATTACACTAACATTGTTCACAACATATAATGTTGATTCAATT TAGCATTCTGTTCCACTTCTTCATCCCAAATAATTAAACCAAGAAAAGAAAACAAACCATTTTGCCAATGCTATCACCAA ACCCACTTTCTCTCTTGTGTGCATTGCTTCTATGCTTGCCTCTTGCCATCTTATACACCACCACGTCCACACCCACCCCC ACTTCCACCTCCACCACCACCACCACCGCCGCCACAGCCACCATTCAACCCCAAAACCGCACAAACAATTTCATTCCACC CAACAAATTATCACCTGAAGAGGCCTTGTTCAGAATAGCCGCACGTGCCAAACGGAAAACCACACGTGCGAGAAAACTAG CTTTCATGTTCCTCACCACCACCCCACTTCCATTCGCACCCCTCTGGGAAGCTTACTTCAACCAAACTCCGACCACCCTC TTCAACATCTACATCCACGCCGACCCCACCTTCCACTACCACCCACCCTTCACCGGCGTCTTCTCCAACCGCCTCATCCC ATCAAAACCCACCGCCAGAAACTCCCCTACGCTCGCCGCGGCGGCGCGTCGACTCCTCGCACGCGCCCTCATCGACGACT CTTCCAACTACATGTTCCTCCTCCTCTCCCCCTCCTGCATCCCCCTCCACTCCTTCAACTTCACCTACCACACCCTCACC ACCTCCGGCAAGAGCTTCATCGAGATTCTAAAAAACGAAACCGGATCATACGACCGGTGGGCGGCGCGTGGAACTCACGC TATGCTCCCCGCGGTGAGGCTTGAGGATTTCCGTATAGGGTCCCAGTTCTGGGCTTTGACACGTAAGCACGCGAGGCTCG TCGTGAGTGACCGCGTGCTGTGGCCGAAGTTCAACGTGCCGTGCGTGCGGTCGGACACGTGTTACCCGGAGGAGAATTAC TTCCCTACTCTCCTGAGCATGTGGGACCGGCGCGGGTGCGTCCACGCCACACTCACCCATGTGGCGTGGACGTTCCCGAA CGACGGGCACCCTCGCACGTATGAGGCGTCCGAGGTGTGCCCTGAACTAATTCGCACATTGCGGCGTGATAGACCGAGAT ACGGTGATGATGACGGAGGTGGCAGTGGCAGACGTGATCCGTTTCTGTTTGCGAGGAAATTCGCTCCCGACGCTATTGAA CCGTTGATGGGTATAGCAGACGGCGTTATCTTCAGGGACTGAAAAATAACAGCGACGTTAAATGCTGTAACTATTGAAAA GTTACTGAAGTCAAAACCTATGATTTTACCAAAATTGGTAATGTATGTACGTAGTACCAATAAAGCTGCAACATGTTAAC CTGTACAGTTAACTTTTGACTTTAATTAGTTTATTGTCCATGCAAAATTCCTGATTTTTTATTTTGGTCATAGTATTTTA TTTATAAAA
CDS sequence (LotjaGi1g1v0383100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTATCACCAAACCCACTTTCTCTCTTGTGTGCATTGCTTCTATGCTTGCCTCTTGCCATCTTATACACCACCACGTC CACACCCACCCCCACTTCCACCTCCACCACCACCACCACCGCCGCCACAGCCACCATTCAACCCCAAAACCGCACAAACA ATTTCATTCCACCCAACAAATTATCACCTGAAGAGGCCTTGTTCAGAATAGCCGCACGTGCCAAACGGAAAACCACACGT GCGAGAAAACTAGCTTTCATGTTCCTCACCACCACCCCACTTCCATTCGCACCCCTCTGGGAAGCTTACTTCAACCAAAC TCCGACCACCCTCTTCAACATCTACATCCACGCCGACCCCACCTTCCACTACCACCCACCCTTCACCGGCGTCTTCTCCA ACCGCCTCATCCCATCAAAACCCACCGCCAGAAACTCCCCTACGCTCGCCGCGGCGGCGCGTCGACTCCTCGCACGCGCC CTCATCGACGACTCTTCCAACTACATGTTCCTCCTCCTCTCCCCCTCCTGCATCCCCCTCCACTCCTTCAACTTCACCTA CCACACCCTCACCACCTCCGGCAAGAGCTTCATCGAGATTCTAAAAAACGAAACCGGATCATACGACCGGTGGGCGGCGC GTGGAACTCACGCTATGCTCCCCGCGGTGAGGCTTGAGGATTTCCGTATAGGGTCCCAGTTCTGGGCTTTGACACGTAAG CACGCGAGGCTCGTCGTGAGTGACCGCGTGCTGTGGCCGAAGTTCAACGTGCCGTGCGTGCGGTCGGACACGTGTTACCC GGAGGAGAATTACTTCCCTACTCTCCTGAGCATGTGGGACCGGCGCGGGTGCGTCCACGCCACACTCACCCATGTGGCGT GGACGTTCCCGAACGACGGGCACCCTCGCACGTATGAGGCGTCCGAGGTGTGCCCTGAACTAATTCGCACATTGCGGCGT GATAGACCGAGATACGGTGATGATGACGGAGGTGGCAGTGGCAGACGTGATCCGTTTCTGTTTGCGAGGAAATTCGCTCC CGACGCTATTGAACCGTTGATGGGTATAGCAGACGGCGTTATCTTCAGGGACTGA
Protein sequence (LotjaGi1g1v0383100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSPNPLSLLCALLLCLPLAILYTTTSTPTPTSTSTTTTTAATATIQPQNRTNNFIPPNKLSPEEALFRIAARAKRKTTR ARKLAFMFLTTTPLPFAPLWEAYFNQTPTTLFNIYIHADPTFHYHPPFTGVFSNRLIPSKPTARNSPTLAAAARRLLARA LIDDSSNYMFLLLSPSCIPLHSFNFTYHTLTTSGKSFIEILKNETGSYDRWAARGTHAMLPAVRLEDFRIGSQFWALTRK HARLVVSDRVLWPKFNVPCVRSDTCYPEENYFPTLLSMWDRRGCVHATLTHVAWTFPNDGHPRTYEASEVCPELIRTLRR DRPRYGDDDGGGSGRRDPFLFARKFAPDAIEPLMGIADGVIFRD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 363 | 363 | 7.0E-176 | – | |
| SignalP_GRAM_POSITIVE | 1 | 34 | 34 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 1 | 363 | 363 | 7.0E-176 | – | |
| Phobius | 7 | 17 | 11 | - | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 364 | 342 | - | – | |
| Pfam | 84 | 318 | 235 | 9.1E-64 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi1g1v0383100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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