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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0384200 |
| Transcript ID | LotjaGi1g1v0384200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-dependent RNA polymerase; TAIR: AT3G49500.1 RNA-dependent RNA polymerase 6; Swiss-Prot: sp|Q9SG02|RDR6_ARATH RNA-dependent RNA polymerase 6; TrEMBL-Plants: tr|T1YXS9|T1YXS9_LOTJA RNA-dependent RNA polymerase; Found in the gene: LotjaGi1g1v0384200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86762989..86768080) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAGCCAAAAACCAAAGCGGGAAAAGAAAATAGAAAAAAAAGAAACAACAAACCAAACCAAACACACTTTCACCGTTT CACAGTTCCACTCACACTCACACTCACACTCACACTCACACTCACACTCACAGTGTGTGTGTGTCTTCATTATATTCTCC AAACTTCGTGAAGAACCCAAACCTTAACTGAATCAATCCAAGACTTGACCATTCAACAACCCAATCGTTTTCTTCCATTC CTTCCTTCCACCGCACACTCGCTTCCCCTTCCGATTCTCTCATCAACAACCTGGTACAACACTAACCCATTTTTCTTCTC TTCAATCTTTGATTTCGAATTCGTTAGTTTCTAATTCCTACGTTTATTACTGCCATTTCGTGCCGATTTTACATTATTTG ATTACTGTGTTTTCTCTGCATTTATTTGTAACCATATTTAGTATGTAAATTTCTGTGTTAAGTATTGATTTAGGGTGATA ATTTCAAATTTCAATATTGATTTAGGGTGGTAATTTCAATGTTTGTGATTTATTATTTTGCAGTGGATTGAGAATATGGA TCTAGGAGGGAGTGAGAAGGAATCAGTGGTTACACAAGTGAGCATTGGAGGTTTTGATAGTGAAGTGAAAGCACATGATC TTGCTGAGTTTCTGGAAAATAGAATTGGACTTGTTTACAGATGCAGGCTGAAAACATCTTGGACACCGCCGGAGTCCTAT CCGGAATTTAATGTCGCGGATACTGCATTGGTTAAGAGGACAGATGACTACAAGAAGGTGGAGCCTCATGCCTTTGTGCA TTTTGCGTTGCCGGAATCTGCGACTGAGGCGCTTGATGCTTCGGGTAGTTGTGATCTAATGTGGGAGGGCAAACCGTTGA AGGTTATCAGCGGGCCTCAGAATCCGTACTTTTTGAACCAGAGGAGGAGAAAGGAGACCCCTTTTAAGCTGTCTGATGTG CTTGTTGAAATTGGGACTTTGGTTAGTCCGGAAGAGTTTGTTGTTGCTTGGAGAGGGCCTGAAAAAGGGGTGAACTTGCT TGTGGATCCTTTTGATAGGATGTGCAGGCTTCGTTTCAGTAGGGATACTGCATTCTCGATCAAACAAAATGAAAAAAAAG CAGTGATAAAGTGTGATTTTAAGGTGGAGTTCATGGTTAGAGACATATATGAGGTCAGGAGATATGATGATACATCGTAT CGTGTTGTTTTATTGCATCTAGCTTCCTCGCCTTTGGTTTGGTATAGAACTGCTGATGATGACATTGAGGAATCGGTCTC ATTTGATTTGCTGGATGATGATGATCCTTGGATTAGGACCACTGATTTTACTCCTAGTGGTGCCATTGGTCGATGCAATT TTTACAGAATCTCAATCCCACCTCGCCATGGTGCTAAATTGATGAAGGCCATGGCTTATCTGAACTTTCAAAGAGTGCAG GAGTTTCCACTTAAACGTCCACTTAGGATACAGGATGAACCTAATTTTGGGGTGCCCATGTCAGATGATTTCTTCTATAT ACATTGTCAGGAGGGGATTACTTTTGACATAATGTTCTTGGTTAATGCAGTCATACACAAAGGCATACTAAATCCTTACA GTTTATCAGATAGGTTTTTTGAAGTACTGAGAAATCAACCTCAGGAGGTCAATGTGGCTGCTTTGAAGCACTTATGTTCT TACAAGCGTCCAGTGTTTGATGCAGCTAAGAGGCTGAAGACAGTCCAAGAATGGCTGCTCAGAAATCCGAAGCTTTATCA GAGCTCCAAACAGGCAGATGATATTGTTGAGGTTAGAAGACTGGTTATTACTCCAACGAGAGCCTATTGTGTACCACCAG AACATGAATTGTCCAACAGGGTTCTTAGAAGATACAGAGAAGTTTCAAATCGTTTCTTGAGGGTCACCTTTATGGATGAA GGCATGCAGACAATTAATGTGAATGCTCTTAACTATTATGTTGCTCCCATAGTTAAGGAAATCACATCAAACTCCTTTCC TCAGAAGACAAGAATATATAAAAGGGTGAAGACTATCCTAGAAGAGGGATTTCACTTTTGTGACCGTAAATACGCATTTT TAGCCTTTTCATCCAATCAACTCAGAGATCGTTCTGCTTGGTTTTTTGCTGAAGACGACAAAATAAAATGTGACGGTATA AGAGATTGGATGGGTAGGTTCAGTAACAGGAATGTTGCAAAATGTGCTGCTAGGATGGGACAATGCTTCTCATCTACTTA TGCAACAGTGGAAGTTCCTGCAACTGAAGTTAACTCCATGCTGCCTGATATTGAGAGGAATAAATATGTTTTCTCTGATG GTATTGGTATTATCACTCCCGACCTTGCAGGTGAAGTTGCAGAAAAATTAAAACTGGACATTGCACCCTCTGCTTACCAG ATTAGATATGCTGGTTTTAAAGGGGTAGTAGCCTCTTGGCCTGCTAAAGGGGATGGGATCAGACTTTCTTTGAGGACTAG CATGAACAAGTTTCAATCTAGTCATACTACTTTGGAGATTTGTGCTTGGACACGGTTTCAGCCTGGTTTTCTTAATAGGC AGATTATAACATTGCTTTCAGCACTGGAGGTATCTGATGAAGTATTCTGGAAAATGCAAGAGGTAATGATTTCAAAGCTG AATCAAATGCTTGTCAATGCAGATGTGGCATTTGATGTTCTTACTAAGTCTTGTGCTGAGCATGGAAATGCTGCAGCAAT AATGTTAAGTTGTGGCTTCAGTCCCCAAACTGAACCTCATCTTAAAGGTATGTTAACTTCTATACGTGCTGCACAGCTTT GGGGCCTTAGAGAGAAGTCCAGGATTTTTGTTTCATCTGGGCGATGGTTGATGGGTGTCTTAGATGAGTTGGGTGTGCTT GAACAAGGGCAGTGCTTTGTTCAAGTGTCTACTCCTTCTCTGGAAAATTGTTTCTCTAAGCATGGCTCTAGGTTTTCAGA GACAAAGAGCCTGCAGGTAGTTAAAGGTTATGTTGTTATAGCCAAAAATCCATGTCTTCACCCTGGAGATGTAAGAATTT TGGAGGCCATTGATTCCCCTGATCTACATCATTTATATGATTGTCTTGTTTTCCCTCAAAAGGGTGACAGACCCCATACA AATGAAGCTTCTGGAAGTGACCTTGACGGGGATCTATATTTTGTCACATGGGATGATAATCTTATTCCACCTAGTAAGAG GAGCTGGATCCCTATGGAGTACGATGCTCAAGAAAGCAAACTTCAAACTCGGAAAGTCACTTCCCGGGTATGTACTTTTT GAATGTCATCTGTTGTGAAGTTCTGTAGTTAATAGCTGCATGGTTTATACTGTACATGGGTAATTTTAAAATAGGAGCAT CTTAGCTTTGATTAGAAACTCAACTGATATGTTCACTACAAGGACTTGCCAAAAAGTAATAAAATTTAATTTTCTCTAGA TATTTCTTCTGATCTAGAACAAAGGAAGAGTCTAGGAAATATTGTTATGCATGCAATCATAGAGATTGATGTATATGCTG CAAGTGTGTTCTCTTGCACACGTTTCTGTGTATGCACACTGTCCTCTAACTTATCTACCAAATATGTTATTTTTATTTTT ATTTTATGTTGCTTCTTTTTTTGTGAAAATATGTTTGTAATTGTAAGCGATTTTGTCTTCCACTCTGCAGGACATCATAG ATTTTTTTGTCAGAAACATGGTGAATGAGAATTTGGGTGCAATCTGCAATGCACATGTGGTACATGCTGATTCCAGTGAT TATGGCGCCTTGGATGAGAAATGCATAATCTTGGCTGAAAAGGCAGCCGCTGCTGTTGATTTTCCAAAGACTGGGAAGCT TGTCATTATGCCTTCGGAGTTGAAACCAAAGCTCTACCCTGATTTCATGGGGAAAGATCAACACATGTCTTACAAGTCCA AGAAAATCCTGGGTAGACTTTACAGGAGGATTAAAGATGCTTATGACAAAGATATCGATGCACCTGAATTGAACTATGTG ACAGGTGCTATACCTTATGATACAGAACTTGAGGTTCCTGGATCTGCTGATTTTATTGCTGATGCATGGAAACAAAAGTG CTCCTATGATGGCCAGTTGAGCGGGCTATTGGGTCAGTACAAGGTGAAAAGAGAAGAAGAAGTTGTCACCGGTCAGATTT GGTCCATGCCCAAATACAACAGCAGAAAACAAGGGGAGCTTAAGGAGAGGCTGAAGCACTCATATAGTGCCCTGAAAAAA GAATTTAGGCAAACTTTTGAGAAGTTGGATTCAGATGTTCGAGAATTAGGCGAGGAAGAAAAAAATTTGTTGTATGAGAA GAAAGCTTCAGCCTGGTATCAGGTGACATATCATCCTACATGGGTGAAAAAATCCCTTGAGCTGCAAGATAAATCCCCAG AGAACCTAGAGTCAAATAGTTTGGGGGAGACGGTGATGTTGAGTTTTCCTTGGATCGCAGTTGATTACCTAGCCCGCACA AAGATAAGGAATCGGGGATTTGGAAGATTTGATTCAACTAAGCCAGTTGGTTCTCTGGCAAAGTATCTATCAGAAAGGTT ATAATTCTTCTCTGATTCATGTTGGTTGCAAAGCCACTCTGCCATTCTCAAATCTAACAGTGAACTTGTGCTTACTTTTC CTATTATATGTAGGTTTTAATTGGTGTTCAGTTAAACTGCTTTGCTGGAAACTAGTCTTATTTTCACTTTCTGTTCACTA GCCAGGAATTGTCTTTGCTTTAGACTTCATATAGTAATAAGTTACATTCTGTGCGTGTTCTATGTTCTCTTCTACCAGGC CTGTTTTGCATATGGTTATGTAGATGACACAAGGTATAATTTTGTGGAACTTTCATATGTAAAATTACAATTCCTTGCCA ATAATTACGTTTTGGCAAGCCAAAGCATTTGAGAATAAGTTCAATGCCCAATGAGTATCAGGATTCTCACATAGACAATT TTTTTCTATCTCCGCTGATTCTTTAAGATCTCCCTTGAAATTGAATATATATATATATATATATATATATATATGTTGTG CACTTGTGCTCCTAGCTACTATCAGTTTGTGATTTTTTTAAGTAATGCTTTC
CDS sequence (LotjaGi1g1v0384200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCTAGGAGGGAGTGAGAAGGAATCAGTGGTTACACAAGTGAGCATTGGAGGTTTTGATAGTGAAGTGAAAGCACA TGATCTTGCTGAGTTTCTGGAAAATAGAATTGGACTTGTTTACAGATGCAGGCTGAAAACATCTTGGACACCGCCGGAGT CCTATCCGGAATTTAATGTCGCGGATACTGCATTGGTTAAGAGGACAGATGACTACAAGAAGGTGGAGCCTCATGCCTTT GTGCATTTTGCGTTGCCGGAATCTGCGACTGAGGCGCTTGATGCTTCGGGTAGTTGTGATCTAATGTGGGAGGGCAAACC GTTGAAGGTTATCAGCGGGCCTCAGAATCCGTACTTTTTGAACCAGAGGAGGAGAAAGGAGACCCCTTTTAAGCTGTCTG ATGTGCTTGTTGAAATTGGGACTTTGGTTAGTCCGGAAGAGTTTGTTGTTGCTTGGAGAGGGCCTGAAAAAGGGGTGAAC TTGCTTGTGGATCCTTTTGATAGGATGTGCAGGCTTCGTTTCAGTAGGGATACTGCATTCTCGATCAAACAAAATGAAAA AAAAGCAGTGATAAAGTGTGATTTTAAGGTGGAGTTCATGGTTAGAGACATATATGAGGTCAGGAGATATGATGATACAT CGTATCGTGTTGTTTTATTGCATCTAGCTTCCTCGCCTTTGGTTTGGTATAGAACTGCTGATGATGACATTGAGGAATCG GTCTCATTTGATTTGCTGGATGATGATGATCCTTGGATTAGGACCACTGATTTTACTCCTAGTGGTGCCATTGGTCGATG CAATTTTTACAGAATCTCAATCCCACCTCGCCATGGTGCTAAATTGATGAAGGCCATGGCTTATCTGAACTTTCAAAGAG TGCAGGAGTTTCCACTTAAACGTCCACTTAGGATACAGGATGAACCTAATTTTGGGGTGCCCATGTCAGATGATTTCTTC TATATACATTGTCAGGAGGGGATTACTTTTGACATAATGTTCTTGGTTAATGCAGTCATACACAAAGGCATACTAAATCC TTACAGTTTATCAGATAGGTTTTTTGAAGTACTGAGAAATCAACCTCAGGAGGTCAATGTGGCTGCTTTGAAGCACTTAT GTTCTTACAAGCGTCCAGTGTTTGATGCAGCTAAGAGGCTGAAGACAGTCCAAGAATGGCTGCTCAGAAATCCGAAGCTT TATCAGAGCTCCAAACAGGCAGATGATATTGTTGAGGTTAGAAGACTGGTTATTACTCCAACGAGAGCCTATTGTGTACC ACCAGAACATGAATTGTCCAACAGGGTTCTTAGAAGATACAGAGAAGTTTCAAATCGTTTCTTGAGGGTCACCTTTATGG ATGAAGGCATGCAGACAATTAATGTGAATGCTCTTAACTATTATGTTGCTCCCATAGTTAAGGAAATCACATCAAACTCC TTTCCTCAGAAGACAAGAATATATAAAAGGGTGAAGACTATCCTAGAAGAGGGATTTCACTTTTGTGACCGTAAATACGC ATTTTTAGCCTTTTCATCCAATCAACTCAGAGATCGTTCTGCTTGGTTTTTTGCTGAAGACGACAAAATAAAATGTGACG GTATAAGAGATTGGATGGGTAGGTTCAGTAACAGGAATGTTGCAAAATGTGCTGCTAGGATGGGACAATGCTTCTCATCT ACTTATGCAACAGTGGAAGTTCCTGCAACTGAAGTTAACTCCATGCTGCCTGATATTGAGAGGAATAAATATGTTTTCTC TGATGGTATTGGTATTATCACTCCCGACCTTGCAGGTGAAGTTGCAGAAAAATTAAAACTGGACATTGCACCCTCTGCTT ACCAGATTAGATATGCTGGTTTTAAAGGGGTAGTAGCCTCTTGGCCTGCTAAAGGGGATGGGATCAGACTTTCTTTGAGG ACTAGCATGAACAAGTTTCAATCTAGTCATACTACTTTGGAGATTTGTGCTTGGACACGGTTTCAGCCTGGTTTTCTTAA TAGGCAGATTATAACATTGCTTTCAGCACTGGAGGTATCTGATGAAGTATTCTGGAAAATGCAAGAGGTAATGATTTCAA AGCTGAATCAAATGCTTGTCAATGCAGATGTGGCATTTGATGTTCTTACTAAGTCTTGTGCTGAGCATGGAAATGCTGCA GCAATAATGTTAAGTTGTGGCTTCAGTCCCCAAACTGAACCTCATCTTAAAGGTATGTTAACTTCTATACGTGCTGCACA GCTTTGGGGCCTTAGAGAGAAGTCCAGGATTTTTGTTTCATCTGGGCGATGGTTGATGGGTGTCTTAGATGAGTTGGGTG TGCTTGAACAAGGGCAGTGCTTTGTTCAAGTGTCTACTCCTTCTCTGGAAAATTGTTTCTCTAAGCATGGCTCTAGGTTT TCAGAGACAAAGAGCCTGCAGGTAGTTAAAGGTTATGTTGTTATAGCCAAAAATCCATGTCTTCACCCTGGAGATGTAAG AATTTTGGAGGCCATTGATTCCCCTGATCTACATCATTTATATGATTGTCTTGTTTTCCCTCAAAAGGGTGACAGACCCC ATACAAATGAAGCTTCTGGAAGTGACCTTGACGGGGATCTATATTTTGTCACATGGGATGATAATCTTATTCCACCTAGT AAGAGGAGCTGGATCCCTATGGAGTACGATGCTCAAGAAAGCAAACTTCAAACTCGGAAAGTCACTTCCCGGGACATCAT AGATTTTTTTGTCAGAAACATGGTGAATGAGAATTTGGGTGCAATCTGCAATGCACATGTGGTACATGCTGATTCCAGTG ATTATGGCGCCTTGGATGAGAAATGCATAATCTTGGCTGAAAAGGCAGCCGCTGCTGTTGATTTTCCAAAGACTGGGAAG CTTGTCATTATGCCTTCGGAGTTGAAACCAAAGCTCTACCCTGATTTCATGGGGAAAGATCAACACATGTCTTACAAGTC CAAGAAAATCCTGGGTAGACTTTACAGGAGGATTAAAGATGCTTATGACAAAGATATCGATGCACCTGAATTGAACTATG TGACAGGTGCTATACCTTATGATACAGAACTTGAGGTTCCTGGATCTGCTGATTTTATTGCTGATGCATGGAAACAAAAG TGCTCCTATGATGGCCAGTTGAGCGGGCTATTGGGTCAGTACAAGGTGAAAAGAGAAGAAGAAGTTGTCACCGGTCAGAT TTGGTCCATGCCCAAATACAACAGCAGAAAACAAGGGGAGCTTAAGGAGAGGCTGAAGCACTCATATAGTGCCCTGAAAA AAGAATTTAGGCAAACTTTTGAGAAGTTGGATTCAGATGTTCGAGAATTAGGCGAGGAAGAAAAAAATTTGTTGTATGAG AAGAAAGCTTCAGCCTGGTATCAGGTGACATATCATCCTACATGGGTGAAAAAATCCCTTGAGCTGCAAGATAAATCCCC AGAGAACCTAGAGTCAAATAGTTTGGGGGAGACGGTGATGTTGAGTTTTCCTTGGATCGCAGTTGATTACCTAGCCCGCA CAAAGATAAGGAATCGGGGATTTGGAAGATTTGATTCAACTAAGCCAGTTGGTTCTCTGGCAAAGTATCTATCAGAAAGG TTATAA
Protein sequence (LotjaGi1g1v0384200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLGGSEKESVVTQVSIGGFDSEVKAHDLAEFLENRIGLVYRCRLKTSWTPPESYPEFNVADTALVKRTDDYKKVEPHAF VHFALPESATEALDASGSCDLMWEGKPLKVISGPQNPYFLNQRRRKETPFKLSDVLVEIGTLVSPEEFVVAWRGPEKGVN LLVDPFDRMCRLRFSRDTAFSIKQNEKKAVIKCDFKVEFMVRDIYEVRRYDDTSYRVVLLHLASSPLVWYRTADDDIEES VSFDLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMAYLNFQRVQEFPLKRPLRIQDEPNFGVPMSDDFF YIHCQEGITFDIMFLVNAVIHKGILNPYSLSDRFFEVLRNQPQEVNVAALKHLCSYKRPVFDAAKRLKTVQEWLLRNPKL YQSSKQADDIVEVRRLVITPTRAYCVPPEHELSNRVLRRYREVSNRFLRVTFMDEGMQTINVNALNYYVAPIVKEITSNS FPQKTRIYKRVKTILEEGFHFCDRKYAFLAFSSNQLRDRSAWFFAEDDKIKCDGIRDWMGRFSNRNVAKCAARMGQCFSS TYATVEVPATEVNSMLPDIERNKYVFSDGIGIITPDLAGEVAEKLKLDIAPSAYQIRYAGFKGVVASWPAKGDGIRLSLR TSMNKFQSSHTTLEICAWTRFQPGFLNRQIITLLSALEVSDEVFWKMQEVMISKLNQMLVNADVAFDVLTKSCAEHGNAA AIMLSCGFSPQTEPHLKGMLTSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSLENCFSKHGSRF SETKSLQVVKGYVVIAKNPCLHPGDVRILEAIDSPDLHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDDNLIPPS KRSWIPMEYDAQESKLQTRKVTSRDIIDFFVRNMVNENLGAICNAHVVHADSSDYGALDEKCIILAEKAAAAVDFPKTGK LVIMPSELKPKLYPDFMGKDQHMSYKSKKILGRLYRRIKDAYDKDIDAPELNYVTGAIPYDTELEVPGSADFIADAWKQK CSYDGQLSGLLGQYKVKREEEVVTGQIWSMPKYNSRKQGELKERLKHSYSALKKEFRQTFEKLDSDVRELGEEEKNLLYE KKASAWYQVTYHPTWVKKSLELQDKSPENLESNSLGETVMLSFPWIAVDYLARTKIRNRGFGRFDSTKPVGSLAKYLSER L
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 1201 | 1195 | 0.0 | – | |
| PANTHER | 7 | 1201 | 1195 | 0.0 | ||
| ProSiteProfiles | 13 | 115 | 103 | 8.655 | ||
| Pfam | 418 | 998 | 581 | 3.8E-178 | ||
| Coils | 1093 | 1113 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA-directed 5'-3' RNA polymerase activity | Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template, i.e. the catalysis of RNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. |
Expression pattern of LotjaGi1g1v0384200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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