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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0385500 |
| Transcript ID | LotjaGi1g1v0385500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Overexpressor of cationic peroxidase 3, putative; TAIR: AT5G11270.1 overexpressor of cationic peroxidase 3; Swiss-Prot: sp|Q8H0V5|OCP3_ARATH Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3; TrEMBL-Plants: tr|I3T4T9|I3T4T9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0385500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86916441..86919665) extracted from Lotus japonicus Gifu genome v1.2.
CTACTTCTCAGGCTCCCTGTGCTCAGTGAAAGAAGATATTGTAGAAGAATGAGTGCAACAGTTCAGTGCTTATCCTGTGC TCGATTCCTTGCAGGAGGCCAATCTCTTCCATTACAACGGAAACCTCTCTTCTCCTCCGTCGTCATTTCTTCTCGGCCCC GAAACCTCTCTTCTTCCATCGTCGCCGCCGCTTCCAGAAAGAAGAAAAACAAGGTCATCTCAATTTTCCCTTCTCCGAAT TCAATGCAGCACTTTCTGATATACTTCTCTATTTTCATTAAGGTTTTCTAATTTATGATGGAATTTGATAATATTTGGGA ACTCAAAGCTGAAAAATTATATCTGATTTCATGAATTTGTCTTTTGCAGTCTCAGAATCAAGGTAAAGAGGGGGAAGAGG ACGCGGTTGAGCTGCTCTTCAAGTTACTTGAAGAGGATCTCAAAAACGATGATTTGTCAATTGATGATGATGATGATGAT GATGATGATGGTAGCTTTGATGACATTCCTGAAGAAGAATTGGCCTTGTTAGAAAGTGTGTTTGCTGATGCATTAGGAGA TGATGATGATGATGATGGTGATGCTGAGCTGTTAAACTCAGATGCAATTGATGTAGAAACTGGTGATGATGAAGAAGCTG GTGATGATCCGGAAAATGACAATGAGGATGGAGATGAAAGCCCCCTGAAGCTTAGAACTTGGCAAATGAAGAAATTGGCT AGAGCTTTAAAAACTGGACGCCGTAAAACTAGTGTAAGTGTCTTTGGCGTGTAGTTTATGAATTTTCCGCAGAACTTGTT TGTTCACTTGTTGCAGTTTTATCTTTCACTTTGTTCCATTTGCATTACTAAACTAGTTATCTATCCTAAATGGGATAACT TACTTCAGTGTTTTTTGGACCATATAACTTAGCGTAACAGATGATGGGATTGTTTTGTTAGTTATACTTTGTATTTTCAG AGGTTGAGTGTTCTGGTTTCTTCCTTGCATTGAGTGCTTGTATGACATTGCATTTGATTTGAATAATACCGGAGTAGACA CTAGTTTGAGAAATCAAAATCAGTTTGGAAAAATGTCAACCATTTGTTTAAGGCTTTTAATCTGATACTGTTAGTAATAG GATGAAGCTTCGGACTCTTCCCTCGGAGCCTAGCCCTGTTGTGGTAGTTGGCAGTGAGAAGTTTCCTATAGCCTGATTGA TTGTTAAGTAGATGCAAGAACTTGATGGACTAGCCAGGTTGGATTTCTTCCTTCCTGAATAACCTGGAGTCGCGATTGGA AGCAATTCATTCTAGTTGCTGCAGATAATGTTCAGTTAATTTGCAAACACATTAACTTCAACTTGTGTTTATTTATTTGT TTTTGAAATGTTGAGATTAAGAACTTGGTTAGGATTTTCATTGAAAGTGCTTTTGATTTGAAGGTGGTCTTTTTGTGTTC ATATGCTAATGAAAGAAGGGGGTCTTTGTTTTGACATGCATGCTTAACATTATAGACCTATGCTAGTCCAGTCTCTATAA TTAACTTCAGGACTCCCTTCCTCGAATTCATCATTTTTATTTGTTGCAGATAAAAAGTTTGGCTGCTGAGCTTTGTCTTG ATAGGGCTCTTGTTCTTGAATTGCTCCGCAACCCTCCTCCAAATCTTCTAATGATGAGTCTATCAGTACCTGATGAACCC CCAGCGACCGTAGTTGAATCGAAACTCGGAGAGACTATTATTAATGAAACAAGTCTGGACAGTGGGGAATCTGAACCCAA GGCTCAAGTACCTATTCATACCATGCAGCGCAGTTGGTCTGCTCAAAAGAGATTGAAAAAAGCCCATGTTGACACTTTGG AGAGAGTTTATAGGAGATCGAAACGGCCCACTGTAAGTAAAGTTTCCCATGCTTCAACATTATGAATTCTATGGTTGAAG ATCATCTGTGATCATTACTAGTACAATGTTCATTGGCTCTTTAGACTTGTTCTTCTGGTTTTGTTTCCTCCATTTTTCTC TTCTAGTAACAATTAAGATACTTACAGCTTAGTTAATTAGTTATATCCATTTCCATTTGTCTGTGTTTCATGATTATGTG TGTGCTGTACTTGTACTTTTGGTTGGAAAACCATGCATGACCTGTACTATAACTGCCTGATTTATGGTTAATCAATGGTT CTCATTTTCAGTTCTCAAGCTAAATGTTTCATTTTAGCCTGAGAGAGGAGAGGACAGAGACTTCAAGAGAAAGGGAGAGA TGCCATATATATATAATTATATATTAGGGTCTTTGGATTTAATTTTAACTATGAAATTATATAAAAACGGTGAAGATTAG ATCTATGACTATATGGTTAACACTTAACATTCACTTTATCTGTGTATATTCTATTTAAAGTCATTAAATCCTATATATTC ATTTCTAATAACATAAGTTGTTAACTTGATACCCTTATCTGTCTGCCATGGATCACAATGCAGAATACAATGATCAGTAG TATTGTGCATGTAACAAACATTCCCAGAAGAAAAGTTGTTAAGTGGTTTGAAGACAAACGCGCCGAGGATGGAGTTCCTG ATCGCCGTCTTCCTTACCAGCGTTCCACTGCCGAAGAAACTGCGTAAGAGTTTACTGTCTTCAATATATTTTTAATGATG TAAGCTGTGGCAAACCTTAGAACTGTATAAAAAGTTATGTTTCAACAAGTGGTCATGTTTTTTGGGGTGACTTATGAGAC AAAGTTAGATTACATGTGGTGATGTAGGTGATTATTCTTCTGGTCACGACAGAGTGGATTTTCGGTCGGTTGCATCCAAT GTCACATACTCACATGCTCAATTTGCAGTCCTTAGTGCAAATTGGCAATGCCATATATGCCAACATAGTTTAATCTTAAA GTTTGCGCAATGTCGCAAAAGGGCACATGATACATCCACTCAAATGTGTAAAATTAACATGTCGCATGACATAGTTTTTT TTTTAATTTTTTTTTTGGACTAGACATAGTTTATTGAAACATTGTGTTAATCATTCTTTTGGTGAATATTTAAAATGTTT TACCTATTTAATACATATGAAAGAGAGATGGACATATTTCAATATGAAAAAACATGAGAGTTTCCAAGTGAAAGAGGTCC TCATCCCACAATTCAGTAGTATAGATTGGAAAAGTTGTGTTGGCGTATTTAGAAATTTGTATCGATTTCTAAACATCTAT TGTTGTGGCATTTTCAGTGTTAAAA
CDS sequence (LotjaGi1g1v0385500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGCAACAGTTCAGTGCTTATCCTGTGCTCGATTCCTTGCAGGAGGCCAATCTCTTCCATTACAACGGAAACCTCT CTTCTCCTCCGTCGTCATTTCTTCTCGGCCCCGAAACCTCTCTTCTTCCATCGTCGCCGCCGCTTCCAGAAAGAAGAAAA ACAAGTCTCAGAATCAAGGTAAAGAGGGGGAAGAGGACGCGGTTGAGCTGCTCTTCAAGTTACTTGAAGAGGATCTCAAA AACGATGATTTGTCAATTGATGATGATGATGATGATGATGATGATGGTAGCTTTGATGACATTCCTGAAGAAGAATTGGC CTTGTTAGAAAGTGTGTTTGCTGATGCATTAGGAGATGATGATGATGATGATGGTGATGCTGAGCTGTTAAACTCAGATG CAATTGATGTAGAAACTGGTGATGATGAAGAAGCTGGTGATGATCCGGAAAATGACAATGAGGATGGAGATGAAAGCCCC CTGAAGCTTAGAACTTGGCAAATGAAGAAATTGGCTAGAGCTTTAAAAACTGGACGCCGTAAAACTAGTATAAAAAGTTT GGCTGCTGAGCTTTGTCTTGATAGGGCTCTTGTTCTTGAATTGCTCCGCAACCCTCCTCCAAATCTTCTAATGATGAGTC TATCAGTACCTGATGAACCCCCAGCGACCGTAGTTGAATCGAAACTCGGAGAGACTATTATTAATGAAACAAGTCTGGAC AGTGGGGAATCTGAACCCAAGGCTCAAGTACCTATTCATACCATGCAGCGCAGTTGGTCTGCTCAAAAGAGATTGAAAAA AGCCCATGTTGACACTTTGGAGAGAGTTTATAGGAGATCGAAACGGCCCACTAATACAATGATCAGTAGTATTGTGCATG TAACAAACATTCCCAGAAGAAAAGTTGTTAAGTGGTTTGAAGACAAACGCGCCGAGGATGGAGTTCCTGATCGCCGTCTT CCTTACCAGCGTTCCACTGCCGAAGAAACTGCGTAA
Protein sequence (LotjaGi1g1v0385500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSATVQCLSCARFLAGGQSLPLQRKPLFSSVVISSRPRNLSSSIVAAASRKKKNKSQNQGKEGEEDAVELLFKLLEEDLK NDDLSIDDDDDDDDDGSFDDIPEEELALLESVFADALGDDDDDDGDAELLNSDAIDVETGDDEEAGDDPENDNEDGDESP LKLRTWQMKKLARALKTGRRKTSIKSLAAELCLDRALVLELLRNPPPNLLMMSLSVPDEPPATVVESKLGETIINETSLD SGESEPKAQVPIHTMQRSWSAQKRLKKAHVDTLERVYRRSKRPTNTMISSIVHVTNIPRRKVVKWFEDKRAEDGVPDRRL PYQRSTAEETA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| Phobius | 15 | 19 | 5 | - | – | |
| Phobius | 20 | 331 | 312 | - | – | |
| PANTHER | 29 | 324 | 296 | 5.5E-79 | – | |
| PANTHER | 29 | 324 | 296 | 5.5E-79 | – | |
| MobiDBLite | 46 | 65 | 20 | - | – | |
| MobiDBLite | 117 | 155 | 39 | - | – | |
| MobiDBLite | 117 | 163 | 47 | - | – | |
| SMART | 255 | 320 | 66 | 8.1E-4 | ||
| Gene3D | 256 | 321 | 66 | 7.8E-9 | – | |
| ProSiteProfiles | 256 | 316 | 61 | 9.329 | ||
| SUPERFAMILY | 258 | 319 | 62 | 4.28E-8 | ||
| CDD | 259 | 311 | 53 | 7.38546E-6 | ||
| Pfam | 264 | 311 | 48 | 1.2E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0385500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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