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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0385700 |
| Transcript ID | LotjaGi1g1v0385700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger (Ran-binding) family protein; TAIR: AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein; Swiss-Prot: sp|O13801|YE04_SCHPO Uncharacterized RNA-binding protein C17H9.04c; TrEMBL-Plants: tr|A0A0L9UHF7|A0A0L9UHF7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0385700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86928887..86929610) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGCCGACCAGGAGATTGGAACTGCAGGACATGCAGCCACCTCAACTTCCAAAGAAGAGAATCGTGCCAACGATGTGG GGAGCCAAGAGCTGGAGCAGGAGGTGACTACGGTGGCGCCTTTGGCAGTGGAGGAGGTGACTACAGTGGCGGCTTTGGCG GTGGCAGAGGCGGCTCCTCCTCTTTTGGCTTCACCACTGGCCCTGATGTCCGCCCTGGTGACTGGTACTGCAATGTGGGA AACTGTGGAGCTCACAACTTTGCTAGCCGCTCTGGCTGCTTCAAGTGCGGTGCACCCAAGGAGGACTCCTCTTCTGGTGG ATATGACATGATGAGATCCTACGGTGGTGGTGGTGGCAGCTTTGGCGGCACCTCCGCTCGCCCCGGCTGGAAATCCGGTG ATTGGATATGCTCCAGGTAAGTTCTTCACCATTTATGACTTTGAGATATTTAAAATTATGACAAGTTAATTGGTTCGCTC CACTCTCAATTTCCATCTTGCAGAGAAACTCTTTTAACTTATGAATCAGATTTTTCTTGGTTCACAGCAGAGAAAGTCTT GTTTTAAGTGATTGTTGGTAAATAAAACAGTAATGGGGAAGGGGGTGTCTGACTAAAATGTGCAGGTCTGGGTGCAACGA GCATAACTTTGCTAATAGAATGGAGTGCTACCGATGCAGTGCACCAAGAGACTCTAATGGCGGCAGGTCTCCATATTGAC GTAG
CDS sequence (LotjaGi1g1v0385700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCCGACCAGGAGATTGGAACTGCAGGACATGCAGCCACCTCAACTTCCAAAGAAGAGAATCGTGCCAACGATGTGG GGAGCCAAGAGCTGGAGCAGGAGGTGACTACGGTGGCGCCTTTGGCAGTGGAGGAGGTGACTACAGTGGCGGCTTTGGCG GTGGCAGAGGCGGCTCCTCCTCTTTTGGCTTCACCACTGGCCCTGATGTCCGCCCTGGTGACTGGTACTGCAATGTGGGA AACTGTGGAGCTCACAACTTTGCTAGCCGCTCTGGCTGCTTCAAGTGCGGTGCACCCAAGGAGGACTCCTCTTCTGGTGG ATATGACATGATGAGATCCTACGGTGGTGGTGGTGGCAGCTTTGGCGGCACCTCCGCTCGCCCCGGCTGGAAATCCGGTG ATTGGATATGCTCCAGGTCTGGGTGCAACGAGCATAACTTTGCTAATAGAATGGAGTGCTACCGATGCAGTGCACCAAGA GACTCTAATGGCGGCAGGTCTCCATATTGA
Protein sequence (LotjaGi1g1v0385700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRPGDWNCRTCSHLNFQRRESCQRCGEPRAGAGGDYGGAFGSGGGDYSGGFGGGRGGSSSFGFTTGPDVRPGDWYCNVG NCGAHNFASRSGCFKCGAPKEDSSSGGYDMMRSYGGGGGSFGGTSARPGWKSGDWICSRSGCNEHNFANRMECYRCSAPR DSNGGRSPY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 33 | 33 | 3.2E-11 | – | |
| PANTHER | 2 | 163 | 162 | 4.7E-68 | – | |
| SUPERFAMILY | 2 | 32 | 31 | 5.97E-9 | ||
| PANTHER | 2 | 163 | 162 | 4.7E-68 | – | |
| ProSiteProfiles | 3 | 32 | 30 | 9.936 | ||
| Pfam | 3 | 29 | 27 | 2.6E-4 | ||
| SMART | 5 | 29 | 25 | 2.8E-6 | ||
| ProSitePatterns | 7 | 26 | 20 | - | ||
| Gene3D | 64 | 104 | 41 | 1.8E-13 | – | |
| SUPERFAMILY | 67 | 103 | 37 | 2.35E-11 | ||
| Pfam | 71 | 102 | 32 | 3.3E-7 | ||
| ProSiteProfiles | 71 | 102 | 32 | 10.342 | ||
| SMART | 73 | 99 | 27 | 3.8E-7 | ||
| ProSitePatterns | 75 | 96 | 22 | - | ||
| Gene3D | 120 | 164 | 45 | 6.7E-12 | – | |
| SUPERFAMILY | 126 | 163 | 38 | 1.57E-11 | ||
| ProSiteProfiles | 131 | 162 | 32 | 10.365 | ||
| Pfam | 131 | 160 | 30 | 7.4E-9 | ||
| SMART | 133 | 159 | 27 | 2.9E-4 | ||
| ProSitePatterns | 135 | 156 | 22 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0385700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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