Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0386200 |
| Transcript ID | LotjaGi1g1v0386200.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Agenet domain protein; TAIR: AT4G32440.1 Plant Tudor-like RNA-binding protein; Swiss-Prot: sp|O22897|DUF6_ARATH DUF724 domain-containing protein 6; TrEMBL-Plants: tr|I1JUF8|I1JUF8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0386200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86959038..86964819) extracted from Lotus japonicus Gifu genome v1.2.
CCGCAAACCAAAAATTCGGATTTCTCTTTTCACTCTTCTCTTGTTGTTGTTCATCGAGTCTCGGAAACCCTCATCGCTAG GTTGCTTGTGGTTGATCACCGAGTCTCGGAAACCCTCGTTCCTTTAAAACGAGGCAAAGAGACTCGCTGCGATTCTGCAA TCGTTGATCACCGTCGAAAAGGTCAGTGTTCATCTTCTTCATCTGTTCTGTTTGATGCTATCTTTTGCGATTTACGTTTT CCAATTTCTTCAATTCGCGACGTGTTTGAATTTCGATTTCGATTTCGTTTTATCGCTTTCTAGTTCCTGATTCTATGCTT ATTTTGATTCGTTTGCCTTTCTGTGTATTGTACCCGTTCTGGATTTTGAATCACCTTTCGAATAACCCTAGTTTCATTTG TATTTGGGGCAAAGAAATTCAGTATTTGTAGCTATTTACATTCAGTAGCCAATTTCCGTTGAGTTTTCCGCTCCAATAAA TTATTGTTTTTGGTTAGTAAATTGTTCTCTTGTAAATTTTCATTCCATTAACACATGTTGATTTGAGTGATGATTGTTTT TTAGCTTCTAGGGTTATAGTTTACAATTGTACTGGAAGGATTTCTTGAAGTTGTGAAAACAAACAATAAATCTGTAACCC TATATGTGTACCGAATGTTAATAATTGTGAGATTTTGTTTCGTGGGGACTAATAATGTTCATGAATGTCACAGGTTGGAG TTTGAATTGATTTGAAGTAGTCACAATGAGATTCAAGAAGGGAAGTAAGGTGGAGATCCTAGGCAAAAACGAAGGGCTTC CTGTGGAATGGCGTTGTGCTCGAATTATTTCTGGTAATGGGCGCACTTACAGTATCCAGTATGACTGTTCTAGCATGACA AGTGAGGAGGCCAGTGTTGATAGGGTTCAAAGGAAGGCCATCAGACCATGCCCCCCTCTTATTCAAGGCACTGGGAGCTG GAAATCTAATGATTTTGCGGAGGTTTATGATGCTGGTTCATGGAGAGCTGCTACTGTTTTGAAGTCCATAGGCCAAGACT TTTACTTGGTTAGGTTGTGGTTGTCTTGCAAGGAGTTTAAGGTGCACAAAGTTGACATGAGGATACGCCAATTTTGGCAA GATGATCAATGGACCCAAGGGATCCTTAACCCAGTGGTAAATTTCGACTTTCTTTTATAAGTGTCAATCGTTGATTATTA TCTTATTTTTATTTTATTCCTTTTATCAAGTATTGTTAAAGTTTTGGCATTTGTGTAGTGTTTGTTAGATTATAACCGAA TTCCAACCCATTTATATCGTTTTACATGTTATTATTGATATTGCTAATTGCTTCTAAATGGAGAAAGTTTTTATTTGCCA TGATTACTCTGAAATTTGTTTCCACTCCGTGTCCTTATATTTTCTGGTGCTTTTCACAGGCCCTAGGTGAATCTGCAGCA GGGAAGACTAGGCGGAATTTGATTTCAAACAACTATACGGTGATGCCTGAAGTGCAACAAGCTAGAAATTCTTGTTTACC AGGATCAGATGCCAGTGATCTCCTGGAGCCTCATCTAACCCCAACAGTGAAGAGAGTGTTCCCTTATGGCTCCTCTCTTG CTGAGGATTATCCCAGGAAAAGGAGGCTTGTTGTCAATATGGGTGAGTGTGACAGAATCAGAGCACCAACCACAGCCCCA TTGCTGGAAAAGGTAGATGCTATTGCTTACCCACAAAATAATATGGGTGAAAAATACTTGCATTCTTCCTTTACTCATAA TATCAAACAATATTATGAAATTAGGGAGGACACTCTTTTTGAAAGAATTGAAGAACCAGATTACTCTTGTGGTGGTCTGA GTTCAGTTGGCAGTTGTAGTGTGACAAGTTGTAGTTCAAATAAATTTTTCAGTGATACATTAGCAGGTCCTTCCCAGTAT GAAGATGAACTTTGTAGTGATGCGGAATCTGTAGATGTTGGAAATGTGGATGGGGACAAAGGATGCACCGATTCTCCGAA AGAGGTTGTACCCGAAAGAATTCATAGGTTAGAGTTGCATGCTTATTACAGTACGTTAGAGGCAATGTATACTTCTGGTC CTTTAAGTTGGGAACAAGAAGGATTATTGACTAATCTTCGTATTTCACTCAATATTTCAAATGATGAGCATTTGATGGGG ATAAAGAAATTAGTATCTAGTCAGCATTTCTAAATGTTTAGACAGGATAGGTTGTCGTACAATTGTTTAAAAAATTTATG TACAGCATTATTTGGTTTTGTGCTAGAGAAGATATTCTTCTGAGTCATCCTATGTTATTCATTCTGTATTATGGAAACTA TGATGCTACAGTTATTATGAACTGATCAAGTTATATGGCACTTTGTTTATTTGTCTTCTTTTAGTTTATTAGGACTTGTA GTGTTAATTTATGTTTTTATGTCCTTTTCAATATTTAAAGTTTAGCTTGCATACCCCCAGTGATTCATAGCTATGAGAGA TTCGTCTGCTTGTCTCTTTAATTTATTTATACTGCTTATGTTTATCATTTAATTTCCCAGCAATGATTAACAACTTGATG ATTATGACTTTGACACCTACTTCACAAAACTACGATTAAAACTAAGATATTGTTTAATTTGGCAAAGTTTTATTAGCTGT CTAATTGTAGCATGAGCTTTTCCACCGTTTGATTGTTATTGATGAATCAACATAATTTTCCAGGGCCAGGGTAGGAGGCT TGCTTGCCTTGCTTCCAATGGCTAAATACAATGGCTAGGTTTGCCTCTTTTCTCTCCGCAAATTAATTGGTGACATCTAC CAATGATTTTCTTGCAGAGATAAGAAATTTCTGACTACTGTTTGCTCTGTTTCCTAATAATATAGTTTGTTTCAGGTCTG CTTTGAACTCTCGTCATGTCATGTCAGAACATGAGCTTTTTTAAATCTGCGGACACAGCACTTACATGGAAGATCCTCTT TAGTACATATGATCAGATAACTGCTGTTTATTTCACTAGTTTGCATGCTGTGTCAATTATCTTCGTGTGACTATAACACT TTATCATGTAAGTTGAAAAGCAAGTTATGCTAGGATGTAACAGTGTTATTAGGGTTGTTAATTGTGCTGCCACATGGTGT CAGGTGATCTCCAAGTGATTTAAGGGCTGTACAGTGCGACTCTAAATCACTGTTACTTTGTTTGATGGGTAAAAACCATA CTCCGTCCCCATTTTTGTGTGACCCACATAGTTCTTAAGGGTTCTTTGGTCATTTCTATAGTGCACCCACTCCTCTTAGG GTTTTTACCCTAAGTCTCCCACTCTCCTTTGTTCGTGAAATGCATCATCTTCACGAATGTTTTAAAAATTAGACCGGTGT TTGAATCGGAGAAGGCATTGATTTAGAGTTTTTTTGTTCGGCCACAGTTATCTGTTAATAATTAAATATATGTTTTTAAT ATCATAATATTTCAATTGACTAACCAACGTGAATTTAAAAATATCAAGATATATAAATCTTTAAATTAATATAAATAGGC CTTATTGTATTTTGTAAGAAAAAGAAATAATAATAGGTTAAATGGTGCTCACTTTTACAGAAATATTATATATTTGTTCT TTCTATTTCTTGAGAATTGTTTTGTATTGAATATAGATTTTGAAAAATTTAAAAAGACTACAATCCTGTTCTTTAGCGTT GTTTTTAATTGGTTTCAACCGTTTTTAGACTAGGTTGACCGGTTCTCTACTAATTTCTTTGCCATCTGAATTTTTGACCT GACTAGTTCACTGGTTGTCCAATGGAGTCGACAAGTCCGGTCCAATTTTTCAAACATCGGTCTTCATTTCCCAATCCATT ATCCATTGGTTTGGTTGTCTCTCTTCTATCCCGTTCTTCCATTTTTTTTAATGTTTGTTTGTGTGGTGTATTACTGACTG TATTCTACCCTCCACAGCCCTCTGTTTTCGCATCTCTGTGACCTCTCTTGTTATGTTTTTTTCTTTTTTGTTGTATATTT TGGTGAATGTGCATTTGTTTCTATGACTTCTTATCATTATTGACTAATATGTCTTTAATTTATGGTAACTTTTTTTTTTT ATCTATGTACAATTTAGAAAAAGGTTAGGGTAGCTCTTGTAAATAGTTAAGGCAATTGTATGTTAGATAGGTTGCGTGAG TAAGTGTTATTATACCTATGTCTTGCTATGGTAAATTATTTTGAAATTAAGGTTGAGTTTTTTTGAATTTTCTTTTGCTG CCATGTGTTCCGGTCCACAGGAAAAGGTGTACATGCTTCTGAAGCAAGCCCCCTTCGTGGCCTCACGATATTGTTGGCAG GTACTGGATGAAAATTGTTTAACACTTGTAGGATCAGTTTTGGATTTTATGTTGAAAATTTACCGCATCTAATTATTGTT TAAGAAACACAAATAAGCATGCACTTGTGTCTCCAAATATCTGCTTTTCATTTTTCTCGCTTGAGCAGTTTCTGTGCATG TAGATATCTCTTCAGATGCTCAAAATGTCTGACTTCACTTTTTTATTCCATTATCAAAGATTCTCAGTTTGTCTTTTTTC TATTGATTTGGATTCTGACACCGCATTATTTTGTTAATTTATTTTTTCATTGAGGCTGAGTTCATTCTGTTTTTCTCTCC AATTAATAATGATGCTTGTAGAGTTCACCACTGTCTAATTAGATGCCATTGCTTTCCTGGTAAGTAACTTTTTGCTATCA GATTTTTTTTTTAAACTTTAGCTTGTAGCCTCGATATTGATGAATAAAACCCTGTACTTGTAAATATATTCTAAAATTCA TCTAGGTTAGTTATTCTTGTTACGCAGATTTTTTTTTCTGTTTATACTCTTAAGACTCTTTTTATTACTGCAGCTAATTA AGCTTTGACTTGCATATATCAAAAGGCTATTGGAAAGGTATCATAAGATGATACGAACAAGTAACTTAGATGCATACTGA ATTTGTTTACCTGCATTTCACATATAAAGTCTGACTTGTTTTCTTAATATGAATCATGGCTCTCTATTTAGTATTTACAG TTCAAACATCAGTGCTAACCCTTCAATTGACATTATATAACAATGACGACAATAACAAAAACATAAACAAAGACCTTTTC CTACAAGGTAGGCCGGGTACATTAATCATAGTGTAATGCCTTGTCATGTAATAAGGCGCAAAAAATCCTCGTCATTGTCA AACAAATTTAACCATGCTGCTATATCATCTTTGGACCTGCTATATAATGCCAAAAAGGTATTTAAAATATACAACATTTG CATACAAATGCAGCTGCTAGCGTAAAAAAAGAGATTTACTCGTGTTATGAGAATGTTGATAGTATTATCCTAAGTTGATA TAATTGCTGTCATCTATTTACTAAGAAATTTAGCGCTTAGTGCATGAGATTATCTTGTCCTAATTCATACAGATTTGCTC GTGTTTGTTCAGGGTGTCTGGAAACCCAATGTTTTTTTTCCTTCACGTTTAGGGATTTTGAGGATTGAAAGTGTATTCAA ACATGTTATTTATCTCAGCTGGTTGTCAAGGGCACCTATCTGAGTTGGCTGTCAAGTGCACATGGGTTACAATTTTTGTT TTTTGATTTAGTACCAATATTTGGCTCGTAAGTTGAGTTTGTAATTTATTTGAGTTCATGTTCTGTATATCTTTAGAATA ACGAAACCTTCTATTTCTAGTCACAACAATTATCATTATGCATTTTTTTTTTACTTGTTTCAAAGGTGTGCGAAGAGTAA AAGCTCTTTACTAATAAACTGG
CDS sequence (LotjaGi1g1v0386200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGATTCAAGAAGGGAAGTAAGGTGGAGATCCTAGGCAAAAACGAAGGGCTTCCTGTGGAATGGCGTTGTGCTCGAAT TATTTCTGGTAATGGGCGCACTTACAGTATCCAGTATGACTGTTCTAGCATGACAAGTGAGGAGGCCAGTGTTGATAGGG TTCAAAGGAAGGCCATCAGACCATGCCCCCCTCTTATTCAAGGCACTGGGAGCTGGAAATCTAATGATTTTGCGGAGGTT TATGATGCTGGTTCATGGAGAGCTGCTACTGTTTTGAAGTCCATAGGCCAAGACTTTTACTTGGTTAGGTTGTGGTTGTC TTGCAAGGAGTTTAAGGTGCACAAAGTTGACATGAGGATACGCCAATTTTGGCAAGATGATCAATGGACCCAAGGGATCC TTAACCCAGTGGCCCTAGGTGAATCTGCAGCAGGGAAGACTAGGCGGAATTTGATTTCAAACAACTATACGGTGATGCCT GAAGTGCAACAAGCTAGAAATTCTTGTTTACCAGGATCAGATGCCAGTGATCTCCTGGAGCCTCATCTAACCCCAACAGT GAAGAGAGTGTTCCCTTATGGCTCCTCTCTTGCTGAGGATTATCCCAGGAAAAGGAGGCTTGTTGTCAATATGGGTGAGT GTGACAGAATCAGAGCACCAACCACAGCCCCATTGCTGGAAAAGGTAGATGCTATTGCTTACCCACAAAATAATATGGGT GAAAAATACTTGCATTCTTCCTTTACTCATAATATCAAACAATATTATGAAATTAGGGAGGACACTCTTTTTGAAAGAAT TGAAGAACCAGATTACTCTTGTGGTGGTCTGAGTTCAGTTGGCAGTTGTAGTGTGACAAGTTGTAGTTCAAATAAATTTT TCAGTGATACATTAGCAGGTCCTTCCCAGTATGAAGATGAACTTTGTAGTGATGCGGAATCTGTAGATGTTGGAAATGTG GATGGGGACAAAGGATGCACCGATTCTCCGAAAGAGGTTGTACCCGAAAGAATTCATAGGGCCAGGGTAGGAGGCTTGCT TGCCTTGCTTCCAATGGCTAAATACAATGGCTAG
Protein sequence (LotjaGi1g1v0386200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRFKKGSKVEILGKNEGLPVEWRCARIISGNGRTYSIQYDCSSMTSEEASVDRVQRKAIRPCPPLIQGTGSWKSNDFAEV YDAGSWRAATVLKSIGQDFYLVRLWLSCKEFKVHKVDMRIRQFWQDDQWTQGILNPVALGESAAGKTRRNLISNNYTVMP EVQQARNSCLPGSDASDLLEPHLTPTVKRVFPYGSSLAEDYPRKRRLVVNMGECDRIRAPTTAPLLEKVDAIAYPQNNMG EKYLHSSFTHNIKQYYEIREDTLFERIEEPDYSCGGLSSVGSCSVTSCSSNKFFSDTLAGPSQYEDELCSDAESVDVGNV DGDKGCTDSPKEVVPERIHRARVGGLLALLPMAKYNG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 340 | 340 | 5.8E-63 | – | |
| PANTHER | 1 | 340 | 340 | 5.8E-63 | – | |
| SMART | 1 | 67 | 67 | 1.9E-8 | ||
| Pfam | 6 | 64 | 59 | 1.1E-9 | ||
| SMART | 70 | 126 | 57 | 0.31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0386200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…