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LotjaGi1g1v0387700.4

Overview

Field Value
Gene ID LotjaGi1g1v0387700
Transcript ID LotjaGi1g1v0387700.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Phosphatase 2C family protein; TAIR: AT2G25620.1 DNA-binding protein phosphatase 1; Swiss-Prot: sp|Q9SLA1|P2C22_ARATH Probable protein phosphatase 2C 22; TrEMBL-Plants: tr|I3SSZ7|I3SSZ7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0387700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:87093757..87096162) extracted from Lotus japonicus Gifu genome v1.2.

ATGGAAGAAAGTGAAGGTGTGAATTGTTTTAGTGAAAGCAGAAGCTCCAGTGAGAGTCGACCTCCGAATCCAAATCCCAA TCCTTCGATTGCTTCTGCTTATCGCCAATGCCAGCGTTCTGACCCTGCGGTTTTGCATTGCAGGAAATCGCTTGTTCGCC ATGCTTCTCTTGTAAGCTTCTCACCTCTCAATGTTTTCCAAAGAAATGAGATTTTTTTTTATATGTATTAAGCAATAGCA TGTTCATTGTGCTGATTGTTTTACTAGAAATAGAATAGTTACAGGATTTGGTAATTTCTTATTTGATGCTATATGTGGAA GTTTTATCATTGCTTCCCTTTTCTGTCCATTTGTTACTTTGATGCAATGATTGTCTTTGAAATATTGTAGCAAAAGAAAA CATGTTGAGTGGTATATGAAATGAAAGTCTTTTTAGCTTATGGTTTATATTTCTTGCATTATCAAAAAAAATCTAGGATT AGGATAGGAGGAGATTTTGTTGGGAAAAAGTAATGGTATACAACGACGGTGGGTTGGAGTGGTCAGATTAGGCAAGTAGT AAATTAGACAACGACATCATGTACAATTTATTAATTTTCTTTTTCATAAAGCTTACATTTTAATCATGGTTATTGATGAC TGCTGTGAGTAGTGTTATTTATGGATTTCAAGTTTCTTTCTTTCTGCACTGATTTTTTTTTTTTTTTTTATCTTTCTCAA TGTTTTCATTTTTGAATGTGTTATTCTAAATTTTTATGGCAAAATCAGCAGACAACAATCAAGCTTTCTGAGGTATGCTC TGAGCCAGGGAATGTTACTGAAGATTGTCAGTCTGATTTCCTTCCAAAGCTTCGTTCTGGAGGATGTGCTGATATGGGGT TCCGGTCAAGTATGGAAGACGTATATGTTTGTGTTGACAACTTTATGCAGGACCAACTGCTCAAGAGCCATATTGATGGG CCCAGTGCATTCTATGGGGTATATCTCTACTATTGGGCTATTGGCCCTTAAATTGATTGGACTACTGATTATTTTGCGGA TGAATTTTGGTTTTTCTGTGTCCTGTTGTGCTATTATTTTCTATCCTCCCCCTTTTAACTCTTATTTTCTGCATGCCTGA TGGTGTATGTTTTATTGTTTTTTGCTAATCTTTGTTCATATGCTAATCTTCTCTGGTAGCCGTGTGTTGCTTTACCTGTT GTGTGGACCAATGTGTCTAAACACATTTTAGACATACCATTGCTAGTGGTAGTGCTTTTAGAGCTGACAGGAACGGAGAA GTTTGTGTATGTTGCTTGCATTTGTTTGTAAACTGCTTGCAAAAGTTAATTAACATCATATGGCCAATGGCTTGGTCAGG TGTTTGATGGACATGGTGGAAAGCATGCTGCTGACTTTGCTTGTCATCATTTGCCAAAGTTCATTCTTGAGGATGAAGGT TTCCCAAGAGATATTGAAAGGATTATTGCTTCTGCCTTTATGCAAACCGACAATGCCTTTGCAGAAGCATGTTCTCTGGA TGCTGCCCTTGCATCTGGCACCACTGCATTGGCTACTCTTGTTATAGGAAGGTCAGGGTTTTGATATTCAATAGTATGTT TGTACATCATTTTTTTTACCCATAGTGCCAAATGTTTGTCAATTATTCTTCTTTGAGCCAGTTTCCACCCTTTTTTAGTA AGTACAAAAGCCAGAAATCATTGGAATGAGGTTAAGAGCATTTTGGCCTAGACAGAAAATGACCCACATCCATGCTCCTC CTTTTCCAAAACAATACTGACATGACATCAGTTTTAAGTACCTTTGGTAAGTTGCTTGTTGATTGTAGTTTCTGATTGCA GGTTGCTAGTGGTGGCAAATGCTGGAGATTGTCGAGCAGTGCTGTGTCGTCGAGGAAAAGCAATTGAAATGTCAAGAGAT CATAAACCAATCTGCAGCAAAGAAAAGAAGCGTATTGAGGGATCTGGTGGCTATGTCTATGATGGATATCTTAATGGGCA ACTTAATGTTGCTCGTGCTATTGGTGACTGGCACATGGAAGGAATGAAAAGCAAAGATGGTGGACCACTCAGTGCAGAAC CTGAACTCATGACTACCAAACTCACTGCTGAGGATGAATTTCTCATCATAGGTTGTGATGGGATTTGGGATGTATTTAGG AGCCAAAATGCTGTCGATTTTGCTCGGCGCAGGCTTCAGGAGCACAACGACCCAGCCTTGTGCAGTAAGGATCTGATTGA TGAGGCATTAAAGAGAAAGAGCGGAGACAATTTATCTGCTGTTGTGGTTTGCTTCCATCAACAGCCACCACCTAACTTGG TCGCACCACGCTCTAGGGTGCACCGGAGCTTCTCTGCTGAAGGTTTGAAGGAGTTGCAAAGCTTCCTGGACAGCTTGGGT AATTGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0387700.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGTTCCGGTCAAGTATGGAAGACGTATATGTTTGTGTTGACAACTTTATGCAGGACCAACTGCTCAAGAGCCATAT TGATGGGCCCAGTGCATTCTATGGGGTGTTTGATGGACATGGTGGAAAGCATGCTGCTGACTTTGCTTGTCATCATTTGC CAAAGTTCATTCTTGAGGATGAAGGTTTCCCAAGAGATATTGAAAGGATTATTGCTTCTGCCTTTATGCAAACCGACAAT GCCTTTGCAGAAGCATGTTCTCTGGATGCTGCCCTTGCATCTGGCACCACTGCATTGGCTACTCTTGTTATAGGAAGGTT GCTAGTGGTGGCAAATGCTGGAGATTGTCGAGCAGTGCTGTGTCGTCGAGGAAAAGCAATTGAAATGTCAAGAGATCATA AACCAATCTGCAGCAAAGAAAAGAAGCGTATTGAGGGATCTGGTGGCTATGTCTATGATGGATATCTTAATGGGCAACTT AATGTTGCTCGTGCTATTGGTGACTGGCACATGGAAGGAATGAAAAGCAAAGATGGTGGACCACTCAGTGCAGAACCTGA ACTCATGACTACCAAACTCACTGCTGAGGATGAATTTCTCATCATAGGTTGTGATGGGATTTGGGATGTATTTAGGAGCC AAAATGCTGTCGATTTTGCTCGGCGCAGGCTTCAGGAGCACAACGACCCAGCCTTGTGCAGTAAGGATCTGATTGATGAG GCATTAAAGAGAAAGAGCGGAGACAATTTATCTGCTGTTGTGGTTTGCTTCCATCAACAGCCACCACCTAACTTGGTCGC ACCACGCTCTAGGGTGCACCGGAGCTTCTCTGCTGAAGGTTTGAAGGAGTTGCAAAGCTTCCTGGACAGCTTGGGTAATT GA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0387700.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGFRSSMEDVYVCVDNFMQDQLLKSHIDGPSAFYGVFDGHGGKHAADFACHHLPKFILEDEGFPRDIERIIASAFMQTDN AFAEACSLDAALASGTTALATLVIGRLLVVANAGDCRAVLCRRGKAIEMSRDHKPICSKEKKRIEGSGGYVYDGYLNGQL NVARAIGDWHMEGMKSKDGGPLSAEPELMTTKLTAEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPALCSKDLIDE ALKRKSGDNLSAVVVCFHQQPPPNLVAPRSRVHRSFSAEGLKELQSFLDSLGN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13832:SF299
1 274 274 7.8E-161 –
SMART
SM00332
1 255 255 2.0E-76
IPR001932
ProSiteProfiles
PS51746
1 257 257 50.838
IPR001932
PANTHER
PTHR13832
1 274 274 7.8E-161
IPR015655
Gene3D
G3DSA:3.60.40.10
1 262 262 2.5E-82
IPR036457
Pfam
PF00481
2 249 248 7.4E-70
IPR001932
CDD
cd00143
2 257 256 6.00004E-90
IPR001932
SUPERFAMILY
SSF81606
2 259 258 5.49E-73
IPR036457
ProSitePatterns
PS01032
33 41 9 -
IPR000222

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004722
Molecular function Protein serine/threonine phosphatase activity Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate.
Subterm of
GO:0006470
Biological process Protein dephosphorylation The process of removing one or more phosphoric residues from a protein.
Subterm of
GO:0043169
Molecular function Cation binding Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0387700.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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