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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0392100 |
| Transcript ID | LotjaGi1g1v0392100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein, putative; TAIR: AT4G31130.1 keratin-associated protein (DUF1218); Swiss-Prot: sp|Q9FMV0|FBL91_ARATH F-box/LRR-repeat protein At5g63520; TrEMBL-Plants: tr|I3SNC3|I3SNC3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0392100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:87675851..87678691) extracted from Lotus japonicus Gifu genome v1.2.
CCGTAAGCAACGGTGAATCTACAGTAGACTTTTGGGGGATACAAATAGGTGATGACAGCCGTACCGTAACGTCATACTGT AATCAAAGTTATCATCGTCCCTCGTTTCTCACGGAATCTCTGTAATCATTCACACTCATCACTGCACCTGGTTTGATTTT CCTTCTCCTTCTTCTTCTTCTACTTCTAATCTTTGCTCTTTGAATTCAATTTTCCCCTTTTCCGCTAAATTGTTTGAGTT TTCTCTCGCAGGCGCTATGGCTCTCACGATCAAACAAATGGCTCTCATTGTTTCCCTTTTTGGCGTCTTGTCTTTCATTT TCGGTGTTGTCGCTGAAAACAAGAAGGTAAACAATCACTCAACTAATCAACCTCGTTAATTGTTAATTTTCTGCAATTGT TTCTCAGTGAGAATTGAGGAGTAAAATTTCACTGTTTAGTCAACGATTCATGGACCTTGCCACCACTATTGATCAATTTT GTTGTTTGGTGAAGAAAATATGAAGTTTTGAAGGGGGAAATCATGATCAGTATGTTTGGTTGGAAAACACGGAAGGAAAT GGATGTATGAATTTGGACTAAGGTTGAAAACAAATTCATTCCTCAATTTCCGTGTTTTCTTTTTGAAACTTTTGATTTTT ATTATTTTTAGAATAATCATGTTTCAAATTAGCCTTTGGGTGTTAGGGTACAAAGAAAAGTTCTTATTTGATGTGATGTG ATAAGAAGAGAAAAATAGAGGGAAAATTGAGAAAACATTTTTATGTTACTTTTTGGAAAAAGTTTCAGGATGTGGTATTT TCTCAATTTCTTGTTTTTTGATTGGTAATCAAACTTTTCCAATAAGTGTTTAGGTTACTTTATGTGAAGAAAAAGTGTTA AAGTGTCTTGTGCCCATAAAAATCAGGAACTGTTAACTTTTGAATTTGTCAGTATGTGATTGGTGCTTATCTAGTGTGAA ATGTCTCATATATGGTGGCAGAGTGTGTTATTGAAGATTCTGTGACTGAAAGTAAGAGGATGAACCTCTGGTTGTTATAG GGTATTATAGTGCTGAACTTCTAATTATGTGTTGTAATTTTTTTTAATGATTTACAGCCTGCTTCTGGAACTCCGGTAAC CGGCAAGGATGGTGTCACCTCCTGCAAGTTCTCGTCTGATCCAACTGTGGTACTGGGGTACCTCTCTGTTGCTTTTCTTC TTGCTTCCACAGTGGCTGGATATCGTTCTCTGTTTTACCCTTACAAGGGACAGTCTGTTCCACAAGGGGTTTTCTTCAAA AACACAAGTTTCTTGGTATTCTTCAATATTGCAGTGTAAGTAGTGTTTCCTTACTCTTATCTTTTCACTTTTTTATGAAT AGCTTTTCATTTATCTGTTTTTCCCTTCCTATTTTCCTGGTTCATAGAGATCAAAGATTGACCCTGATTACCTTCAGGAG TGAATTCATGTAGTCTGAGACTCTTATAAAAATGGGTCAATTTTGGTCAATGCAGATGTAAATCACATGTTAGTTACTGC TACAATGCTAGTAGAATGCATTATGCTTATGCATCTTCTTTTTTGGCACAATAAATTTTTGTAGTACTTATCTGATGATC AGTAGTATACATCAAGCACCTTGCACCCATGAAAGCACTTTTTTCAATCTACAATGAGACATGAATTTCTGTTGAAAGTG CTTTTTAAGCCTTTCAAATGGAAATGCAAACACAAAGGACTGGATTAGTGGTACTTTGAGCCTTGTTGGCATCAATCTAC ACACATATATAGCCTAACAATGTATAGTCTACTTCTACTATTAATTCTGTAGCGAAAATAAATTCTGGTGTGATTCTTTA ACATAATTGATTTTAAAGTAAAATAAGTTGATCCTAACATGCTATATATCATTAGTATTTCTGCGAGCTCAGTTCCATAT CTTTTACTTCTTGTTTCCGCTGAATGATTTTTCCCCCTTATTGGTGTATCTACTCAGGTTCTCAACTGGACTAGCTGCAG CTATGTTGTTATGGCCAACAATTACTGAACAGATTCACCTTACACACAAAGTACACCATGAACTCGACTATGCTTGCCCT ACTGCTAAAACTGGTCTCCTTGGAGGTGGTGCCTTTCTATCCCTCGATTCGTGCCTCTTTTGGTTGGTTGCGCTCATGTT AGCTGACAATGCTCGCGAGGATTATCTCGATGAAGACAAGGATGTCAAGGGCGATGACAAAGTTTCCTCAGATGCTTTTG CTGCTGTTGATATAGTCATATAAGAATAACGGAAGTGCCTGGGGCGTGTTACTAAATGGAACATCCCACTGCACAGTTAC TTTGTCATTTGTTTTCAAATTTAAAGATGGAATATGGTTTTAACTCAATACTTTATGGGGCTGTTTATGAAAATACTCTT GGCAGTTTATGAAATACTTTTCTATAATGCTCATTGTTACGATCCTATAGGCAACGAATTGCAAGAATGCTTTATTTACA AAGTAGTTTACTTACTCTGCTTTATCCCTTGGAAAAAAAACAAATTCATTTGTAGGCATCATGATGTCATGGGGTTGGTC TCCTTCCTTATGAACTAATGTATACATGTACAGAGACAGGTTATTTTTCTGCTTTTTTTTTGTTATACTCACAACCATTG CATTGTAACATTCTAGTTAACTTTTATCCAAAAGATACAAACATTTATTTATTTATTTTGTGTTAGAAATATTTCCAAAC TGCTCACTGGGTTTGGATGGCTAAAATTAAATAGCAAGTGTATCTGTGAAGGGACCCATCTTTGAATTTCTGTATGGATT CACGTTTGACTTGGATTCAGTTTATCCCTTTGATGCGTTGG
CDS sequence (LotjaGi1g1v0392100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCTCACGATCAAACAAATGGCTCTCATTGTTTCCCTTTTTGGCGTCTTGTCTTTCATTTTCGGTGTTGTCGCTGA AAACAAGAAGCCTGCTTCTGGAACTCCGGTAACCGGCAAGGATGGTGTCACCTCCTGCAAGTTCTCGTCTGATCCAACTG TGGTACTGGGGTACCTCTCTGTTGCTTTTCTTCTTGCTTCCACAGTGGCTGGATATCGTTCTCTGTTTTACCCTTACAAG GGACAGTCTGTTCCACAAGGGGTTTTCTTCAAAAACACAAGTTTCTTGGTATTCTTCAATATTGCAGTGTTCTCAACTGG ACTAGCTGCAGCTATGTTGTTATGGCCAACAATTACTGAACAGATTCACCTTACACACAAAGTACACCATGAACTCGACT ATGCTTGCCCTACTGCTAAAACTGGTCTCCTTGGAGGTGGTGCCTTTCTATCCCTCGATTCGTGCCTCTTTTGGTTGGTT GCGCTCATGTTAGCTGACAATGCTCGCGAGGATTATCTCGATGAAGACAAGGATGTCAAGGGCGATGACAAAGTTTCCTC AGATGCTTTTGCTGCTGTTGATATAGTCATATAA
Protein sequence (LotjaGi1g1v0392100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALTIKQMALIVSLFGVLSFIFGVVAENKKPASGTPVTGKDGVTSCKFSSDPTVVLGYLSVAFLLASTVAGYRSLFYPYK GQSVPQGVFFKNTSFLVFFNIAVFSTGLAAAMLLWPTITEQIHLTHKVHHELDYACPTAKTGLLGGGAFLSLDSCLFWLV ALMLADNAREDYLDEDKDVKGDDKVSSDAFAAVDIVI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 183 | 183 | 2.0E-84 | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| PANTHER | 1 | 183 | 183 | 2.0E-84 | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| TMHMM | 9 | 26 | 18 | - | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| Phobius | 22 | 26 | 5 | - | – | |
| Phobius | 27 | 54 | 28 | - | – | |
| TMHMM | 54 | 76 | 23 | - | – | |
| Phobius | 55 | 75 | 21 | - | – | |
| Pfam | 61 | 155 | 95 | 2.3E-13 | ||
| Phobius | 76 | 94 | 19 | - | – | |
| Phobius | 95 | 115 | 21 | - | – | |
| TMHMM | 96 | 118 | 23 | - | – | |
| Phobius | 116 | 142 | 27 | - | – | |
| TMHMM | 142 | 164 | 23 | - | – | |
| Phobius | 143 | 165 | 23 | - | – | |
| Phobius | 166 | 197 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0392100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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