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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0393000 |
| Transcript ID | LotjaGi1g1v0393000.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Receptor-like protein kinase; TAIR: AT1G18390.2 Serine/Threonine kinase family catalytic domain protein; Swiss-Prot: sp|P0C5E2|LRL12_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2; TrEMBL-Plants: tr|A0A072VQB2|A0A072VQB2_MEDTR Stress-induced receptor-like kinase; Found in the gene: LotjaGi1g1v0393000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:87766752..87770300) extracted from Lotus japonicus Gifu genome v1.2.
CTTAAAATGATTGAAGCAAGCAAGCAACCATACATTTCAATACTTGAGATAAGATTTCATTTGATTGAGCATGACGTCGT GCTCTGTGCTATGCTTCCTTCTCCTCCTCTTCCAAATTCTTGTAATTATACAAACAACCTGTGCCTCAAAAACATGTCCC CCTTCTTCGTGTGGCAATATCACCAACATACGTGACCCATTTCGTCTAAAGGATGACCCTCCAACCTGCGGGAATCCGGA GTACGAGTTAACTTGTGTAGAAAACCGCACGTTATTGTTATCTTTATTTCCAGGTAAAAAGCAGCTACTTGTTCTTCTTC TTCTCAATTTAATTCGTTTGTGTTCATTTCTTCAGTAACTTATAAAATGCATGAGCCAACTTATTTTTTTAAAGCCAAAT TTATTGAAGAAATAACACTAGGTGTGCTAAACCATGTATAGATAAAAAGAAGAAATATTTAATAGTTTGAATTTTTGCGT TCAGTAAAATCTCAATTGGTGAATAATAATTTTCAGAAAGATCCCTAATGCTCATATTAATTAAAGAGTTGACCTTTGTT AGCCTCCCCGGCCACCATGTCAGTCACCCCTAAAAACTTTAATTAATATGCTTGACAATATATACTACTCCTACTTCGGA GTATGTTATACATATAATTAATAGTGTTTGTTTGAATTTGGGTGACAGGTAAAAATTATTATGTGAAGGCAATCAACTAC AATAATTTCACAGTCCGTGTAGTAGATCCGGGCATCCATGACCATGAGGGCGATTGCTCCTCCATTCCTCGTTATTTCTT ATCTGAGCCCAATTTCACCACTACTAGTCGTTATTATTATAGAGATGCCTATTATTATTCTCACATTTTCAAGTACGTGA ATTACTTGAAGTGTAGCAACCCAGTGAAGGATGATCTTCGATACGTGGATACAGCTCCCTGCAACCTTCTCAACAACTCC AAAGGTCATCTTTATGCTGTCTATGGGGACCTGTCGGCTTGGGACTTAAAACTCGATTGCTCTGCTACATCTCTTATAAT TGATTCCACTTACATGCCAAATCAAAACTTTTTCTACCAGGAAATTCACAGGATGTTAGTCTATGGATTTGAAGTGTCGT GGCTGAAGTGGAGTAAGTAAGAGGAACCTTCTTTAGTTGTTATCGATCTTCTTCAAAATTTGTGATAGTGGTGGTTAAAA ACTTCTTTATTTGTTATCTTTTCCAAAATTTGTGAGCTAATTATATATATTTTCTTTCTTTCCCTCTTACAGACGGTCGC CAAATTAATCTGCTAACACTGTTCAGTTCTGTGTTATTACGTAAGGAATATCTCTAAATTTTATTTTTTTACCGTACATG CAACTTTTTTTTTATCGATCAGCAATTTATTTGGCTACCAATCCCTCATTTCATGAGATCAAATCACATTGAAATTGATT GTTATTTCATTAGGGGAAAGGTTGCTAATGGTACGATATGGGTTTGAAGTCACAAAGCTAGGCTGGGAATTTTGAAACAG TACTATTGTCCAAGATGGGAATTTTGAATTTGTACCTCCCATCTTGAGGGGGGAGTATTAATTATAATAAAGTTGTATCA ATTTAAACACCTAAATTTATTAAGTTTGTGCATGAATTTATTTGCATATGATCAAAATAAGCAATGGTTACTACTTATTC TTTCTCGTTAAAGTGTACTCTTATATATATTTTCTCTTCCCTTTCATGACAATACTAAACTTTCTTGCAGGTATTATAGT GGGCTTTATTCAAGGTAATCTTTTAATTTTGTTTATCCTTTCTTTGTATTTTCTCCTAGTTTTTATTCTTTAATCATATG CAAAAGTTTTATTACTTTACTTTAGTTTCTTATATCCTACACAGGACTAGCACAGGCAGCAGTACCTCTACTGAAAGCAA TGGGTGTTGCACGAGGATATGATGCAATTGGGCTTAATAATAGCCTTGATGTTGAATTCATACTTCTGTCGTATGAGATA GCAAGAGTTACGGGGAAGTATGTCTTGCCATCATATATTCTAGTGAGACTTATGGTTGGTCTTATACTTCTTTTTGGAAA TTGGACATATACATATCGAACAAGACATACATCAATTTATGAAAATATAGAAGATTTTCTTCAAGGGAACTCCTTCATAC CAATAAGATATTCATATAAAGAGATTAAAAATATGACTAGATGTTTTAAGGATAAGTTGGGTGAAGGAGGCTATGGCACT GTTTACAAAGGAAAGCTTCGTAGTGGACCTTTTGTAGCCGTAAAGATGTTGGGCAAACCTAAGGCTAATGGGCAAGATTT CATTAATGAAGTCGCAACCATAGGAAGAATACATCATGGCAACGTAGTTCAACTTATTGGTTTTTGTGCTGAAGCATCCA AACGTGCTCTTATTTATGAATTCATGCCAAGTGGCTCTCTTGATAGATATATTTCCTCCAAAGAAGATGGTATCTCTTTA ACTTATAGCCAAATGTACACAATATCTCTTGGAGTTGCTCGAGGTATAGCATATTTGCATCAAGGTTGTGACATGCAAAT TTTACATTTTGATATCAAGCCTCACAACATCCTTCTTGATGAGAACTTTATTCCTAAAGTTTCAGACTTTGGTCTCGCAA AACTGTACCCAATTGACAATAGTATTGTCAAATTGACTGCAGCAAGAGGAACGATTGGCTATATGGCTCCAGAACTATTC TATCAAAATGTTGGAGGAGTGTCCTATAAGGCTGATGTCTATAGCTTTGGAATGCTTTTGATGGAAATGGCAAATAGGAG AAGAAATTTGAATCCATATGCAGATAACTCAAGTCAAATTTTTCTCCCTATTTGGATTTACGACCAATTGATTGAAGAAA GGGAGATAGAAATTGGAGAAGTTACTTACAAGGAAAAGAATGATGTGAAAAAAATGTTCATAGTGGCTTTGTGGTGTATA CAATTGAGACCCGATGATCGTCCTTCAATGAACAAAGTAATAGAGATGCTTGAAGGAGAAGTTGAAAGCATTATCATGCC TCCAAAGCCTTCTCTATACCCAACTGAAATTATTCAAGATCCTAGCAACAACTATGATGAATTCATATCGGGTTATACTT CTGGCACAATGTGTTTTCTTGAGGAAACTATAGAAGGTCCTTTATTGAAGGACTCTTCTTAATCTGTGCTAGTAATTTAT ATTTCATTATTATTTTATCGATTATAATTACCTTCGCGAACATCATAATTCTTGATGAATACATATTACTCTCTATTAAT TAATAATGAGATCGATGATGCTTAGCGAATTTACCTTAGTACGCCACCTCTTTTCCTACTATTTGAAGATATTATTTCCT TAAGAAAAAATGCAAATTACTCCCCTGAAGTTTAGTTTACGTGCGGCTTAAACCCTTACCTTTTAAAATGTGTATTTATA ATCCAAAACTTTTATAAGTGTGCAATATTAACCTTCTGTTAACATTTCTATTAAATTTTAATTGAGTTTGTCACTTAGCA CATGACATTTTTTCTCCCTAAATTATCCC
CDS sequence (LotjaGi1g1v0393000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGTCGTGCTCTGTGCTATGCTTCCTTCTCCTCCTCTTCCAAATTCTTGTAATTATACAAACAACCTGTGCCTCAAA AACATGTCCCCCTTCTTCGTGTGGCAATATCACCAACATACGTGACCCATTTCGTCTAAAGGATGACCCTCCAACCTGCG GGAATCCGGAGTACGAGTTAACTTGTGTAGAAAACCGCACGTTATTGTTATCTTTATTTCCAGGTAAAAATTATTATGTG AAGGCAATCAACTACAATAATTTCACAGTCCGTGTAGTAGATCCGGGCATCCATGACCATGAGGGCGATTGCTCCTCCAT TCCTCGTTATTTCTTATCTGAGCCCAATTTCACCACTACTAGTCGTTATTATTATAGAGATGCCTATTATTATTCTCACA TTTTCAAGTACGTGAATTACTTGAAGTGTAGCAACCCAGTGAAGGATGATCTTCGATACGTGGATACAGCTCCCTGCAAC CTTCTCAACAACTCCAAAGGTCATCTTTATGCTGTCTATGGGGACCTGTCGGCTTGGGACTTAAAACTCGATTGCTCTGC TACATCTCTTATAATTGATTCCACTTACATGCCAAATCAAAACTTTTTCTACCAGGAAATTCACAGGATGTTAGTCTATG GATTTGAAGTGTCGTGGCTGAAGTGGAGTAAACGGTCGCCAAATTAA
Protein sequence (LotjaGi1g1v0393000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTSCSVLCFLLLLFQILVIIQTTCASKTCPPSSCGNITNIRDPFRLKDDPPTCGNPEYELTCVENRTLLLSLFPGKNYYV KAINYNNFTVRVVDPGIHDHEGDCSSIPRYFLSEPNFTTTSRYYYRDAYYYSHIFKYVNYLKCSNPVKDDLRYVDTAPCN LLNNSKGHLYAVYGDLSAWDLKLDCSATSLIIDSTYMPNQNFFYQEIHRMLVYGFEVSWLKWSKRSPN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 25 | 25 | - | – | |
| PANTHER | 6 | 221 | 216 | 7.6E-53 | – | |
| PANTHER | 6 | 221 | 216 | 7.6E-53 | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| Phobius | 18 | 25 | 8 | - | – | |
| Phobius | 26 | 228 | 203 | - | – | |
| Pfam | 27 | 100 | 74 | 3.2E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polysaccharide binding | Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. |
Expression pattern of LotjaGi1g1v0393000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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