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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0393800 |
| Transcript ID | LotjaGi1g1v0393800.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcriptional adapter 1; TAIR: AT2G24530.1 transcriptional regulator of RNA polII, SAGA, subunit; Swiss-Prot: sp|A6QR06|TADA1_BOVIN Transcriptional adapter 1; TrEMBL-Plants: tr|I1K940|I1K940_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0393800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:87835068..87839356) extracted from Lotus japonicus Gifu genome v1.2.
ACGAAGAGAAACAAAAGTGGTAAGAGAAACCTCGATTATAAATAAATTCACCAACAAAAAGAAAAAGAAAATAATTTCGA GAGAAAGAAAAAAGAAAAGAAAAGAAAAACAAAAAACAGAGAGAGAGAAAGAGAAGAAAGCTTGAAGCTTGAAACCCAGT GAGTGAGGTTCGAGATTTGTATGCAAAATTCCTCAACTTTGCAAACCTCATAGTTCAATCAATGTGCAACTCCTTCGTTT TCCCCCTTCAAAGTCACTACCTTTAGTATTCAATCTTCTTCATTGTGCTTCCTTCCATTCCAATTTCAATTTTCCCCTGT TACTCTGTTTTCCCCAAACTCACTGATCTCGCACCCTTCTACTTCAAATTTCGCAATTTGAACTCCGCAGCATTGGAATT TGGTCAAAATGAGGGTTCAATTTGGTGCAGCGATGTGATGTTTCGTCACAGCCATGGTGTTTCCGACCCGGGTTTGGTGA TTCAAACTTAGGGTTTTTGATTTGGGATTCAATTCAACGAAGTCGGTTTGATTTGAGGGGTTTCGCGCTTGGAGTTTTTG CGGTTTGATCTCTAGGGTTTTGGCTACCGGAAGATGAGATTTGGGTTTGCATTGTGCGGTCAATTGGTTGCTGAATTCGG GTTTGTTTGGGTGTAGAGGTAACAAACAGTGTTCTGGTTCAGAATTGCATGTTTCTTCTCTCTGGGGTTGCTGTTATTAG TGTAATTCATGCATCTGGTTGGTCTGATATGCAGTACTACTTGTAGCTAGTTGATTTGTGATTAGCTGTTATGGGGGAGG GGAAGTTTAGAGTTCTTTGGAAGCGGAAATAACTGCGATTTTGGCTCGAATTGGGGTTACGGGTGGGTGGGTCGTTTTTC TGATTCGTTGGGCGTTGTATGAATCTGTTTGGTCAGAAATGCAACCCCAGCAGAGCTCAAGAATTGATTTGGGTGAATTA AAGGCACACATTGTAAAGAAGCTTGGAGTGGATAAGTCAAAGCGGTACTTTTATTACTTGAACAGGTTTCTGAGTCAGAA GCTGGCCAAGAATGAGTTTGATAAGTTGTGTTTTCGAGTACTTGGGAGGGAGAATCTTCCGTTGCACAACCATTTTATAA AGTCAATTTTGAAGAATGCCTCCCAAGCAAAGACCCCGCCACCAATCCAACCATCCGGTCCCCTGAAGTCTGTTGATCGT GCTACAGACATATCTCCTGGTAGAGAAGATGGGCATGAACAGAGTGTTGCCAGCTTCCAGAATCAAAATCAAAATGCGAC CATATGGTCGAATGGGGTTTTGCCTGTATCCCCACGAAAGGTTAGGTCTGGAATACGTGATCGGAAGTTGAGGGATAGAC CAAGCCCTCTTGGACCAAATGGGAAGGTTGATTCTGTTTCTCACCAGTCCATGGGCACAGAAGACAGTGGTAGTAAAGTT GATATGGAGAATGGAATTCTTACTCCATGTGATTATCTGAGACCGACACAGCATCTTCTAGCTGTTGCTGAGCTACCTGA GGATGAAAGGGCGGATGCAGTTCAGCGACCTGCAGAAAAACCAAGAATACACGGCAAAGGGCCAGCAGAAATGTCAATTG TTGAAGATGGGGAAGAAGTGGATCAGTTTAACCGCCTGAATTTCTCTAGAAGTCCCTTGATAGCACCACTTGGGATTCCT TATTGTTCAGCAAGTGTAGGTGGGGCTCGCAAAGCATTGCCAGTGTCTAGCATTGGTGATTTTGATAGTTGCTGTGACAG TGGTTGGTTGTCTGATACAGATACGCTGCGAAGGCGAATGGAGCAGATTACTGCAGTACAGGGTCTTGGAGGTGTTTCCA TGGAATGTGCCAATGTGTTGAATAACATGTTGGATGTATACTTGAAACGGTTGATCAGGTCTTGTGTTGAATTAGTGGGA GCTAGGTCCACGAATGATCTGAGGAAGCCCCCTGCCCCCAAACAGCAGATTCATGGTAAGGTCATAAATGGTGTGAGGCC AAGTAATCATCTACACATGCAGAATACTGGTGGGCTGGCAGAGCCTGTGCCTGAACATAGACCACCATGCTCAATTTCTT TGCATGATTTTAAAGTTGCCATGGAGCTAAATCCACAGCAACTTGGAGAAGATTGGCCACTGATGTTGGAGAAAATATCC ATGCAATCGTTTGAGAAATAACACATTTATGAGGATTTGTCTTATGCAAAGCCAGAAGGTCTTCTGTTCTTTCTGCGAGT ATGAACCAGATGGCCCCAATGCTTCTAGACCTTTCAGGATGAAATACTGGTTTTGACCTTCAAATTGTCTTATCTCTGGA TTCTCTGCTATTTATAGGGCATGGTTGGGTCAACAATTTATTTAACTGCAACCAAGGGTACTATCAAATCAAACCCAGGA TTGGTTGCATTGTTGTATGTTGTTAGCATTGATGTTGGCTGTAGCTAGAGATCTCAAAGCTTTTCTTTGCTTTACAGCCA ACGAAAAAGAAAATTAAGAAAGTTTTGCAGGGGTGCTGTTTGTAGCTGGGGGAAGGAACTATAACATGTATAAGAGCTGC AGGGTTGCTCTGTATGTATTTTTAGATTGATTGGAATTCAATATCAATAACACATTAACATCTATTGAAGTTTCCCTGAT GATTTTAGTTCTATGGTTGAATCCCCTGATGTCAAAATTCACCAATAGTTGAAGTAATGTTTTTGTTTTCTAGTCTTTTT GTGTAGAATTGTAGCTTACACAACTCTTTTACTTCATTAATTTGGTGACTGTAATTGTTATTTCTAAATTCTAATAAATG TGAAATTTATAAATTTTGACATGTTATTATTTCCTCCATCAAATGTACGTAGACTGAGTAGCATTTTTTTATGAATGCTT ATTGAGATATCTTATCCATTTTTTTGTTTCTGTAGTGTTAACATCTGATTAATCGATAACCATTTTGATGTATTTGTTTA AAATTTGACTGATTGAAGTAACCTGCACATTTTTATGTATTACATTCATAGCAGCATATGGGATACTAGTACTTTTTCTG TAATCGGAAAGCTTTTAAAATTATAAGATTAAGCCTGAAGGGTGTTGGTGCTTTTTCTGCATTAAGTTCTCTTGAATGAT TGGAACATTTTCTACTCATATATTGTAATTTATATTGACACTCATGTAGATGAAGAGTGTTGTTACGTTAAAAACAGTGT TGCTAGGAATCTGGCGTGCCGGTCGGTTAATTATGAAAGTTAGACTTGGAGGAAGTTACTTGTAAATGGGTTGTTGCATG TTATTTATTGAATGCAATGGGGGACTGAGAAAGAAGACTTTTTAATTGTGATCTTGCTACTTTCTTTGTTTTCTACTATT TGTCACAAAAAGCAACTGATACAATTAACAGTTTACACAATGTGTACATAATTCCATAATTTGTATAATCTACACACATT TATGGTTAGTGAAAAATTAAAATTTCAACATGTTTAAGCTGCAGCAACATTATGTATTGTTATGAATTTACAAATGGTCT CGACATTGAGTCATTATAATTGTTTATATGATGGTGACCAGCAGAATTCCTTGGAACATATGCTTTTAGCAGCATGCATG CTCCCAGTAAGATCATTCTACGTCTAATAATGTTGAAAGTTGAAACTTACCTAAGAATGTCTGAACCTTTCAGTATTGTC CTTGTTTTGCACACTGTTGCTTGTGCATTTTTAACTGATTTTCCCTTATCCTTGCAACTGAACACGTGATAAATGGGTGG CTAACAGGTTATTTTAGTTGGGGTTTTACTTTGTGTGTCTTTTACATCACTATAAATTGAATACAAAAAATCCATTGTAA CTACCAGAAGCTAGACCATCAGTCTAAATTATGCAGTCCATCAGAAATAAATTATGGAGACTGATTTGTTATCAATGCTA ATGACCATTGAAGTCTTTATGTTCATTGATCTTGTATGAATACTTGGAAGTTTGTTATTCTATTCTGTCCTCATCATTGT CACTCTGATGCCCCATTCTTGAAATGTAAAACTTAAAAAACCTTTCTGGACCAAAATGATATTAGAAGATTTATTTTTAT ATATTGAATTGCCATATTTATTATTTAGAATATTGAGGTTGGATTTTATTTGTATTTCTTCTCAAAACTTAAAACGGCCA TGAATGATTTGAGTGGCTGTTGTGATGTCATCATCTTTTCAATCTTCTGCAGGTGTGACTAAGTTTTGGAGTTTGACGTT CAGGGCTGCATTGCGATAGATGATATTACATTAGGAGAGCCAAGGCTGG
CDS sequence (LotjaGi1g1v0393800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAACCCCAGCAGAGCTCAAGAATTGATTTGGGTGAATTAAAGGCACACATTGTAAAGAAGCTTGGAGTGGATAAGTC AAAGCGGTACTTTTATTACTTGAACAGGTTTCTGAGTCAGAAGCTGGCCAAGAATGAGTTTGATAAGTTGTGTTTTCGAG TACTTGGGAGGGAGAATCTTCCGTTGCACAACCATTTTATAAAGTCAATTTTGAAGAATGCCTCCCAAGCAAAGACCCCG CCACCAATCCAACCATCCGGTCCCCTGAAGTCTGTTGATCGTGCTACAGACATATCTCCTGGTAGAGAAGATGGGCATGA ACAGAGTGTTGCCAGCTTCCAGAATCAAAATCAAAATGCGACCATATGGTCGAATGGGGTTTTGCCTGTATCCCCACGAA AGGTTAGGTCTGGAATACGTGATCGGAAGTTGAGGGATAGACCAAGCCCTCTTGGACCAAATGGGAAGGTTGATTCTGTT TCTCACCAGTCCATGGGCACAGAAGACAGTGGTAGTAAAGTTGATATGGAGAATGGAATTCTTACTCCATGTGATTATCT GAGACCGACACAGCATCTTCTAGCTGTTGCTGAGCTACCTGAGGATGAAAGGGCGGATGCAGTTCAGCGACCTGCAGAAA AACCAAGAATACACGGCAAAGGGCCAGCAGAAATGTCAATTGTTGAAGATGGGGAAGAAGTGGATCAGTTTAACCGCCTG AATTTCTCTAGAAGTCCCTTGATAGCACCACTTGGGATTCCTTATTGTTCAGCAAGTGTAGGTGGGGCTCGCAAAGCATT GCCAGTGTCTAGCATTGGTGATTTTGATAGTTGCTGTGACAGTGGTTGGTTGTCTGATACAGATACGCTGCGAAGGCGAA TGGAGCAGATTACTGCAGTACAGGGTCTTGGAGGTGTTTCCATGGAATGTGCCAATGTGTTGAATAACATGTTGGATGTA TACTTGAAACGGTTGATCAGGTCTTGTGTTGAATTAGTGGGAGCTAGGTCCACGAATGATCTGAGGAAGCCCCCTGCCCC CAAACAGCAGATTCATGGTAAGGTCATAAATGGTGTGAGGCCAAGTAATCATCTACACATGCAGAATACTGGTGGGCTGG CAGAGCCTGTGCCTGAACATAGACCACCATGCTCAATTTCTTTGCATGATTTTAAAGTTGCCATGGAGCTAAATCCACAG CAACTTGGAGAAGATTGGCCACTGATGTTGGAGAAAATATCCATGCAATCGTTTGAGAAATAA
Protein sequence (LotjaGi1g1v0393800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQPQQSSRIDLGELKAHIVKKLGVDKSKRYFYYLNRFLSQKLAKNEFDKLCFRVLGRENLPLHNHFIKSILKNASQAKTP PPIQPSGPLKSVDRATDISPGREDGHEQSVASFQNQNQNATIWSNGVLPVSPRKVRSGIRDRKLRDRPSPLGPNGKVDSV SHQSMGTEDSGSKVDMENGILTPCDYLRPTQHLLAVAELPEDERADAVQRPAEKPRIHGKGPAEMSIVEDGEEVDQFNRL NFSRSPLIAPLGIPYCSASVGGARKALPVSSIGDFDSCCDSGWLSDTDTLRRRMEQITAVQGLGGVSMECANVLNNMLDV YLKRLIRSCVELVGARSTNDLRKPPAPKQQIHGKVINGVRPSNHLHMQNTGGLAEPVPEHRPPCSISLHDFKVAMELNPQ QLGEDWPLMLEKISMQSFEK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 419 | 419 | 2.2E-217 | – | |
| PANTHER | 1 | 419 | 419 | 2.2E-217 | ||
| Pfam | 4 | 333 | 330 | 7.6E-68 | ||
| MobiDBLite | 73 | 110 | 38 | - | – | |
| MobiDBLite | 134 | 175 | 42 | - | – | |
| MobiDBLite | 135 | 149 | 15 | - | – | |
| MobiDBLite | 156 | 171 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | SAGA-type complex | A histone acetyltransferase complex that acetylates nucleosomal H3 and H2B and is required for the expression of a subset of Pol II-transcribed genes. The budding yeast complex includes the acetyltransferase Gcn5p, several proteins of the Spt and Ada families, and several TBP-associate proteins (TAFs); analogous complexes in other species have analogous compositions, and usually contain homologs of the yeast proteins. |
Expression pattern of LotjaGi1g1v0393800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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