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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0393800 |
Transcript ID | LotjaGi1g1v0393800.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Transcriptional adapter 1; TAIR: AT2G24530.1 transcriptional regulator of RNA polII, SAGA, subunit; Swiss-Prot: sp|A6QR06|TADA1_BOVIN Transcriptional adapter 1; TrEMBL-Plants: tr|I1K940|I1K940_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0393800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:87835986..87837248) extracted from Lotus japonicus Gifu genome v1.2.
ATGCAACCCCAGCAGAGCTCAAGAATTGATTTGGGTGAATTAAAGGCACACATTGTAAAGAAGCTTGGAGTGGATAAGTC AAAGCGGTACTTTTATTACTTGAACAGGTTTCTGAGTCAGAAGCTGGCCAAGAATGAGTTTGATAAGTTGTGTTTTCGAG TACTTGGGAGGGAGAATCTTCCGTTGCACAACCATTTTATAAAGTCAATTTTGAAGAATGCCTCCCAAGCAAAGACCCCG CCACCAATCCAACCATCCGGTCCCCTGAAGTCTGTTGATCGTGCTACAGACATATCTCCTGGTAGAGAAGATGGGCATGA ACAGAGTGTTGCCAGCTTCCAGAATCAAAATCAAAATGCGACCATATGGTCGAATGGGGTTTTGCCTGTATCCCCACGAA AGGTTAGGTCTGGAATACGTGATCGGAAGTTGAGGGATAGACCAAGCCCTCTTGGACCAAATGGGAAGGTTGATTCTGTT TCTCACCAGTCCATGGGCACAGAAGACAGTGGTAGTAAAGTTGATATGGAGAATGGAATTCTTACTCCATGTGATTATCT GAGACCGACACAGCATCTTCTAGCTGTTGCTGAGCTACCTGAGGATGAAAGGGCGGATGCAGTTCAGCGACCTGCAGAAA AACCAAGAATACACGGCAAAGGGCCAGCAGAAATGTCAATTGTTGAAGATGGGGAAGAAGTGGATCAGTTTAACCGCCTG AATTTCTCTAGAAGTCCCTTGATAGCACCACTTGGGATTCCTTATTGTTCAGCAAGTGTAGGTGGGGCTCGCAAAGCATT GCCAGTGTCTAGCATTGGTGATTTTGATAGTTGCTGTGACAGTGGTTGGTTGTCTGATACAGATACGCTGCGAAGGCGAA TGGAGCAGATTACTGCAGTACAGGGTCTTGGAGGTGTTTCCATGGAATGTGCCAATGTGTTGAATAACATGTTGGATGTA TACTTGAAACGGTTGATCAGGTCTTGTGTTGAATTAGTGGGAGCTAGGTCCACGAATGATCTGAGGAAGCCCCCTGCCCC CAAACAGCAGATTCATGGTAAGGTCATAAATGGTGTGAGGCCAAGTAATCATCTACACATGCAGAATACTGGTGGGCTGG CAGAGCCTGTGCCTGAACATAGACCACCATGCTCAATTTCTTTGCATGATTTTAAAGTTGCCATGGAGCTAAATCCACAG CAACTTGGAGAAGATTGGCCACTGATGTTGGAGAAAATATCCATGCAATCGTTTGAGAAATAA
CDS sequence (LotjaGi1g1v0393800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAACCCCAGCAGAGCTCAAGAATTGATTTGGGTGAATTAAAGGCACACATTGTAAAGAAGCTTGGAGTGGATAAGTC AAAGCGGTACTTTTATTACTTGAACAGGTTTCTGAGTCAGAAGCTGGCCAAGAATGAGTTTGATAAGTTGTGTTTTCGAG TACTTGGGAGGGAGAATCTTCCGTTGCACAACCATTTTATAAAGTCAATTTTGAAGAATGCCTCCCAAGCAAAGACCCCG CCACCAATCCAACCATCCGGTCCCCTGAAGTCTGTTGATCGTGCTACAGACATATCTCCTGGTAGAGAAGATGGGCATGA ACAGAGTGTTGCCAGCTTCCAGAATCAAAATCAAAATGCGACCATATGGTCGAATGGGGTTTTGCCTGTATCCCCACGAA AGGTTAGGTCTGGAATACGTGATCGGAAGTTGAGGGATAGACCAAGCCCTCTTGGACCAAATGGGAAGGTTGATTCTGTT TCTCACCAGTCCATGGGCACAGAAGACAGTGGTAGTAAAGTTGATATGGAGAATGGAATTCTTACTCCATGTGATTATCT GAGACCGACACAGCATCTTCTAGCTGTTGCTGAGCTACCTGAGGATGAAAGGGCGGATGCAGTTCAGCGACCTGCAGAAA AACCAAGAATACACGGCAAAGGGCCAGCAGAAATGTCAATTGTTGAAGATGGGGAAGAAGTGGATCAGTTTAACCGCCTG AATTTCTCTAGAAGTCCCTTGATAGCACCACTTGGGATTCCTTATTGTTCAGCAAGTGTAGGTGGGGCTCGCAAAGCATT GCCAGTGTCTAGCATTGGTGATTTTGATAGTTGCTGTGACAGTGGTTGGTTGTCTGATACAGATACGCTGCGAAGGCGAA TGGAGCAGATTACTGCAGTACAGGGTCTTGGAGGTGTTTCCATGGAATGTGCCAATGTGTTGAATAACATGTTGGATGTA TACTTGAAACGGTTGATCAGGTCTTGTGTTGAATTAGTGGGAGCTAGGTCCACGAATGATCTGAGGAAGCCCCCTGCCCC CAAACAGCAGATTCATGGTAAGGTCATAAATGGTGTGAGGCCAAGTAATCATCTACACATGCAGAATACTGGTGGGCTGG CAGAGCCTGTGCCTGAACATAGACCACCATGCTCAATTTCTTTGCATGATTTTAAAGTTGCCATGGAGCTAAATCCACAG CAACTTGGAGAAGATTGGCCACTGATGTTGGAGAAAATATCCATGCAATCGTTTGAGAAATAA
Protein sequence (LotjaGi1g1v0393800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQPQQSSRIDLGELKAHIVKKLGVDKSKRYFYYLNRFLSQKLAKNEFDKLCFRVLGRENLPLHNHFIKSILKNASQAKTP PPIQPSGPLKSVDRATDISPGREDGHEQSVASFQNQNQNATIWSNGVLPVSPRKVRSGIRDRKLRDRPSPLGPNGKVDSV SHQSMGTEDSGSKVDMENGILTPCDYLRPTQHLLAVAELPEDERADAVQRPAEKPRIHGKGPAEMSIVEDGEEVDQFNRL NFSRSPLIAPLGIPYCSASVGGARKALPVSSIGDFDSCCDSGWLSDTDTLRRRMEQITAVQGLGGVSMECANVLNNMLDV YLKRLIRSCVELVGARSTNDLRKPPAPKQQIHGKVINGVRPSNHLHMQNTGGLAEPVPEHRPPCSISLHDFKVAMELNPQ QLGEDWPLMLEKISMQSFEK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 419 | 419 | 2.2E-217 | – | |
PANTHER | 1 | 419 | 419 | 2.2E-217 | ||
Pfam | 4 | 333 | 330 | 7.6E-68 | ||
MobiDBLite | 73 | 110 | 38 | - | – | |
MobiDBLite | 134 | 175 | 42 | - | – | |
MobiDBLite | 135 | 149 | 15 | - | – | |
MobiDBLite | 156 | 171 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | SAGA-type complex | A histone acetyltransferase complex that acetylates nucleosomal H3 and H2B and is required for the expression of a subset of Pol II-transcribed genes. The budding yeast complex includes the acetyltransferase Gcn5p, several proteins of the Spt and Ada families, and several TBP-associate proteins (TAFs); analogous complexes in other species have analogous compositions, and usually contain homologs of the yeast proteins. |
Expression pattern of LotjaGi1g1v0393800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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