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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0394200 |
| Transcript ID | LotjaGi1g1v0394200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Kelch repeat-containing F-box family protein; TAIR: AT2G24540.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q8LAW2|AFR_ARATH F-box protein AFR; TrEMBL-Plants: tr|K7KTQ4|K7KTQ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0394200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:87872524..87874917) extracted from Lotus japonicus Gifu genome v1.2.
TGTGTCCCCAGCGCCCACCCTCTTTTGTGTACACACACTGTCCTTTCCTCCCTCTCTCTCATTGATTGATCCATCCATCT ACTCCAAATAATGTAAACGAATCAACCAACTCTCCTTTTCTCTTTATCAATCGTTTCTCATCTCAACCAAACCAACAATC CCAAATTCAACACCAAGTTCATCACTTCATCACCTCAACTTATGCTTTTGCAGCAATCACGTCACTCTCAGCTGTAACTT TTTTAATCCTTTCTTCAATCCCCAAGTCTTTGTTCATACGGATTTGCCGGAAACATTTAAAATACTCCCATCCCATTCCA TTCACTCCCCTACTCTGTTTTACTCTGTTTTCTCTACACACCCACTTAGCTTAGCTCACTGTGCATCAGAATCTACCCTA CCCACCACCAAATTTTATACTCAAACCAATCACAAACGTTCTTAAGGCCCTACCCTTCACTTTTTCTCCAGCAATTCCGT GTCGTGGCATACAAGGGTCTCTCTCTCTTTTCCTTTATATGCCATAGACAGTAACCATAGCAGAAAACAAAGAAAATGGC GGTTGTGGAAGGCGACAAAGAAAGAGAGCCACTCATTCCGGGGTTACCGGATGAAGTTGCAGAGCTTTGTCTTCTTCATG TTCCTTACCCTTACCAAGCTCTAGTTCGCTCTGTTTCATCTTCATGGAACAGAGCAATCACACACCCTGCTTTCAAGAAA ACTCTCTCTCGCTCATACCTATTCGTTGTTGCTGTGAATAAAGCAACCGGTAAGATTCAATGGCAGGCGCTGGACCCATC ATCGGCGCGGTGGTTCGTGCTTCCTCCGATGCCGCTGAGCGACGCCGGTGGACAAACTTCCTTCGCCTGTGCATCGCTGC CGAGACAGGGGAAGCTCTTCGTGATGGGGATGAAGACCGCTGTAGTATACAGCACTGCAACAAATCAGTGGTCGGTGGCG AGTGGGGTTCCCGGCGGGAGGTCGTTTTTCGCGGCGGAGGAGGTTAACGGGAGGATTGTGGCGGTTGGTGAGCGCGGGAC GGGAATCTACGACCCGGAGAAAGATAAGTGGACGAGGGGCGCTGCGCTGAGCGGGGAGCTGAAGAGGTACGAGGCGGCGG CGGTGGAGGGGAAGGTGTACGTGACGGAGGGGTGGTGCTGGCCGTTCACGCGCCGGCCGAGAGGGTGGGCGTATGATTCC GAGAGGGACACGTGGCGGGAGATGAGGGAGGGGCTGAGGGACGGGTGGACGGGGGTGAGCGTGGCGGTGGAGGGGAAGCT CTTTGTGATCCCCGAGTACGGTGACTTGCCGGTGAAGTTTTACGACGAGGGAACTGACACGTGGCGGTGTGTGGCTGGGG ACAGGTTTCCTAGGGAAGCAATGCAGAGACCCTTTTGTGGGAGGGGTTTAGATGGCAAAATCTATGTGGTCTCTTCTGGT TTGAATGTGGCCATTGGGAGTGTTGTTTTTGTTAACAATGTCCCCCAACATGATAGTCACAATGACAACAACAATGGTGG ACAAGGTGTTGGGGTTGAGTTGACGTGGCAGGTGGTGGAGGCGCCACCAGCTTTCCGCGAATTCTCACCTTCTAGTTGTC AGGTGTTGTATGCTTGATGAAGTTCGATTCTCAACTCTTGTCTCATGCTCCTAACCGTTAAGTGCGCTGATTGTAGATTA ACGATTTATCTTATCGAAACCGACCATCGGATATCTTTGATTAAGACGAAAAGGTGTTGTATGCTTGAACATGAACAACT ACATTTGCAACTGTTTATTGAGTAATGGCCAGGGTGGATATGTTTTTATTCACTAGTAGTGGCCAGGGTAGACAACAGAC ACTTTTTTGTTTTTGTTCTTGTTTTATTAGGCATGTCTTCACATTCTAGCAATGCTTCCAATGTATTTTGGGGGGTATTG GGGGCAATTTTGTTTATTTTAGTGAAAAGGATGAATGGAAAGGAGAGTTGAGTTGTTAGTTAAATGAATCTGAATCATTA GCATGGTGTGTAATAGAATATAGGGATGCAAGTAGAGATCGAACACCTGCTGTGTAGGAGGATTATAAGACAATGATTCG GAAGTATAGCTTGGAGCTTCATCATGGAACGCATGTTCTGAACAATCCTGCTTTAATCATTTAAATCAAATATTAAATGG AAAGAAAAACAACGAGGAGAGAGAGGTAGTTTTACTTTGGTCTTTCATATTTTGGATTAAGGTCTTTTTGTCCTATTTTT TAGGAGCCCAAGGAATAATAGTGACTAACTTCCACATTGCGGGTGCTCGGCAAGTAAATGACTCGATCTTATGGTTAAAA AATAAGTTGAGCAAACCATCACGCCACAATTCATCGTTAAAATCTTATATGCTCGTTTGAAAAATAGTAAAGAA
CDS sequence (LotjaGi1g1v0394200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGTTGTGGAAGGCGACAAAGAAAGAGAGCCACTCATTCCGGGGTTACCGGATGAAGTTGCAGAGCTTTGTCTTCT TCATGTTCCTTACCCTTACCAAGCTCTAGTTCGCTCTGTTTCATCTTCATGGAACAGAGCAATCACACACCCTGCTTTCA AGAAAACTCTCTCTCGCTCATACCTATTCGTTGTTGCTGTGAATAAAGCAACCGGTAAGATTCAATGGCAGGCGCTGGAC CCATCATCGGCGCGGTGGTTCGTGCTTCCTCCGATGCCGCTGAGCGACGCCGGTGGACAAACTTCCTTCGCCTGTGCATC GCTGCCGAGACAGGGGAAGCTCTTCGTGATGGGGATGAAGACCGCTGTAGTATACAGCACTGCAACAAATCAGTGGTCGG TGGCGAGTGGGGTTCCCGGCGGGAGGTCGTTTTTCGCGGCGGAGGAGGTTAACGGGAGGATTGTGGCGGTTGGTGAGCGC GGGACGGGAATCTACGACCCGGAGAAAGATAAGTGGACGAGGGGCGCTGCGCTGAGCGGGGAGCTGAAGAGGTACGAGGC GGCGGCGGTGGAGGGGAAGGTGTACGTGACGGAGGGGTGGTGCTGGCCGTTCACGCGCCGGCCGAGAGGGTGGGCGTATG ATTCCGAGAGGGACACGTGGCGGGAGATGAGGGAGGGGCTGAGGGACGGGTGGACGGGGGTGAGCGTGGCGGTGGAGGGG AAGCTCTTTGTGATCCCCGAGTACGGTGACTTGCCGGTGAAGTTTTACGACGAGGGAACTGACACGTGGCGGTGTGTGGC TGGGGACAGGTTTCCTAGGGAAGCAATGCAGAGACCCTTTTGTGGGAGGGGTTTAGATGGCAAAATCTATGTGGTCTCTT CTGGTTTGAATGTGGCCATTGGGAGTGTTGTTTTTGTTAACAATGTCCCCCAACATGATAGTCACAATGACAACAACAAT GGTGGACAAGGTGTTGGGGTTGAGTTGACGTGGCAGGTGGTGGAGGCGCCACCAGCTTTCCGCGAATTCTCACCTTCTAG TTGTCAGGTGTTGTATGCTTGA
Protein sequence (LotjaGi1g1v0394200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVVEGDKEREPLIPGLPDEVAELCLLHVPYPYQALVRSVSSSWNRAITHPAFKKTLSRSYLFVVAVNKATGKIQWQALD PSSARWFVLPPMPLSDAGGQTSFACASLPRQGKLFVMGMKTAVVYSTATNQWSVASGVPGGRSFFAAEEVNGRIVAVGER GTGIYDPEKDKWTRGAALSGELKRYEAAAVEGKVYVTEGWCWPFTRRPRGWAYDSERDTWREMREGLRDGWTGVSVAVEG KLFVIPEYGDLPVKFYDEGTDTWRCVAGDRFPREAMQRPFCGRGLDGKIYVVSSGLNVAIGSVVFVNNVPQHDSHNDNNN GGQGVGVELTWQVVEAPPAFREFSPSSCQVLYA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 353 | 346 | 5.8E-133 | – | |
| PANTHER | 8 | 353 | 346 | 5.8E-133 | – | |
| SUPERFAMILY | 11 | 70 | 60 | 2.13E-6 | ||
| Pfam | 14 | 57 | 44 | 2.0E-4 | ||
| SMART | 17 | 57 | 41 | 4.5E-4 | ||
| Gene3D | 47 | 324 | 278 | 1.9E-27 | ||
| SUPERFAMILY | 61 | 296 | 236 | 8.37E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0394200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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