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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0395200 |
| Transcript ID | LotjaGi1g1v0395200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY family transcription factor; TAIR: AT4G31550.1 WRKY DNA-binding protein 11; Swiss-Prot: sp|Q9SV15|WRK11_ARATH Probable WRKY transcription factor 11; TrEMBL-Plants: tr|A7LHI7|A7LHI7_SOYBN WRKY50; Found in the gene: LotjaGi1g1v0395200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:88107428..88110254) extracted from Lotus japonicus Gifu genome v1.2.
CAACGTTGAACTTGAACACACACACACATTATTCCTGATCTACCGTTCACAAATCTTCAAACTCATCTCAGCCCTTCATT TAATCAAACAAACAAAATCAGAATAAGAATATCATGTTTGACCTGACCCAAACAAACAAAAACACACACTCTCTCTCTTC TTTCTCTCTCCTCTCACCCCACAATATAAGTGAACCCTCTTCTCCATTTCCTTCACTCTTTTTCCAACATAAACAGAAAA AAAACCTGCTACTTCTTCTTACGACACCGTTTTGACTCTGTTCTGATTCCACCACCACAACCGGTGAAAATGACGGTGGA GCTCATGGGGTTCCCTCAAATGGACCAACAGAAGAAAGCAATTCAAGAGGCTGCAAACGAAGGCTTAAAAGGCATGGAGC ATCTCATCAATCTCCTCTCTCACCAACCCTCTCATCTCCAAACAGATCTAACCGACGTAACCGTTTCCAACTTCAAAAAA CTCATCTCCCTCCTCAACCGCACCGGCCACGCCCGCTTCCGCCGCGCACCTCTCCCCTCCACCCCCACTCCGCCACAACC TAATCCCATCGCCGTTCACCACCCTAAGCCCACCGTCGCACAATCCCTGACTCTCGACTTCACAAAACCCAACAACTTCT TGACCTCCAACGCTAAGTCGTTAGAGCTCGAATTCTCCAAGGAAACAACAACGTTTAGCGTCTCCTCCAACTCCTCCTTC CTCTCCTCTGCCATCACCGGCGATGGCAGCGTCTCCAACGGCAAACTAGGCTCCTCCATCTTCCTCACCCCGGCGGTCTC CGCCGGCGGGAAGCCTCCCCTCTCATCAACAACTCCGTCCAAGAAAAGGTGCCACGAGCACTCCGGCGATCCCTCCGGCT CCAACACCAAGTGCCACTGCACCAAGAGAAGGTACCCCGCGCTTCACCGTAGATTTCCCCTGATACCAAAAAAAATTGAA AATGGTTTTTGTTTTGTCCTTTTCCTCGTTACAATCGAAGCCAATTAATTATTTAATTAATTTAATTAATTAATTAACAA GTCTGCGTTAATTAGAATAAAAAGTCAACGATTTCGGTGGTAGTGCAGTTAGAGTCCTTGAATGGGCACGGCACACGTGA GTGAAAGTGACTACATAACGTTTTTTGTCTTTTACTGTTGACCATAGCACACGGTGCATGTTAGCAAAAGCAGCGTATTG TAAGATTTCGATTTTTAATTTTTAAATTTTTTTTTTTGAAATTTTCAGGAAGAATCGGGTGAAGAAGACGATAAGGGTGC CGGCGGTGAGTTCGAAGGTGGCGGATATTCCGGCGGACGAGTACTCATGGAGGAAGTACGGTCAGAAACCGATCAAGGGC ACACCATACCCACGGTGAGGATCAGTGATGTGTTTGAATCGTGGCCGTTGTTTTTGTTTGACTTTGGTCAACGACATTTT ACTGACGTTGTTTTTGTGTGTTTTGGTTTCAGTGGTTATTACAAGTGCAGCACCGTGAGAGGGTGTCCGGCGAGGAAACA CGTGGAGCGGGCAACGGATGATCCGGCGATGCTGATTGTGACGTACGAGGATGAGCACGATCATGGGATTCAGACCGCGA TGCATGATAACATTTCTGGTGCTGTGGGTTTCGTATACGAGTCAACGTAAGGTGGTAATTTGAAGGGAAAAAATATTGGG AATTTTTTTATTTAATTTTTTTTATTGGGAGTAGTAGGTAAAAGAGGGAAAAAAACATGAATGGGTTGGAACCGAGGTGG TGGTTGCAATGTAAATTTGTTTTGGATGAAAAGATTTTATCATTATCTTTTAGGGACTAATCTTACCTCTTGTGGTATTG TGATTTATTAATTTATTTGAGACAAATTTCAAGTGGTTTTAGTATATGTATAATCAACATCTTGGAATTCACTTCTCTTT CGGAGAATCAATTATGATATTTAGAAGCAATTTATAAACTTTCGTTTAGAATTGATTTTAGATGGATTCTTCTTTTTTTA ATCAATTTTGATATATAGGAACTTCCACCCAAAATTGATTAAAATCAACTAATATGGATTTTCAATCACGTATTGAGTTA TGTAGAAGTGGAATGCAATTTGGGATGGTTTTATTGGGTTGTTTTAGTGTGTTGAATGGGTCACCATCCTTTTTGACATA GATGTTGATAAACATTAGTAATTAACAGGTATCCAAAGAGCATTGATCTATAAAATATTTTACATAATGAGTTGTTTACC TGTATAATGGCAGAATTTTCAAAGACAATCTTTGCTACTCCATTTGACATGTAACGACATGGGTGAAAAAAGGTGTATAA AGAATTACAATCCGAGAGATTTGTAAAAGAAACTTTAAATTTACGGCCGTTTATTTTCTTGTTAAAAAATATGAAAGCGG AAGAATGACACATTTTAATGCACTTATTTTCTTTTTATGAAGTCGGGCGTATTAGTTGATGTTTATATTACTCTTGCTTA GTTTGGCTTGTTTTGAAAGTAAGAACTATTCAACCTTTGAAATGTGTATGAATTTGTGATTTGTCAATGAAGTTTACTCT ACATAAAATATGAAGAAATTGGGAAGTGCTTATGGGAGCATAACATTATGGCATTTACCGTTCCTCCGTTATTGAACGAT TCAACATTTTGGCTTTGAATTTGAATGCGTTGACTTTAACAAAAATAATAGAACTAAGAGCATCTCCAATGCTAGTTCTT ATTTCTTAGTTCATAGCACTATTCATGTGGGCCCGTACTGCCACATGTGCTTAAGCAACTCTATGCACATTTTGCTCCAA CCATGAGTTCTTAGTTCTTAGTTCTTA
CDS sequence (LotjaGi1g1v0395200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGGTGGAGCTCATGGGGTTCCCTCAAATGGACCAACAGAAGAAAGCAATTCAAGAGGCTGCAAACGAAGGCTTAAA AGGCATGGAGCATCTCATCAATCTCCTCTCTCACCAACCCTCTCATCTCCAAACAGATCTAACCGACGTAACCGTTTCCA ACTTCAAAAAACTCATCTCCCTCCTCAACCGCACCGGCCACGCCCGCTTCCGCCGCGCACCTCTCCCCTCCACCCCCACT CCGCCACAACCTAATCCCATCGCCGTTCACCACCCTAAGCCCACCGTCGCACAATCCCTGACTCTCGACTTCACAAAACC CAACAACTTCTTGACCTCCAACGCTAAGTCGTTAGAGCTCGAATTCTCCAAGGAAACAACAACGTTTAGCGTCTCCTCCA ACTCCTCCTTCCTCTCCTCTGCCATCACCGGCGATGGCAGCGTCTCCAACGGCAAACTAGGCTCCTCCATCTTCCTCACC CCGGCGGTCTCCGCCGGCGGGAAGCCTCCCCTCTCATCAACAACTCCGTCCAAGAAAAGGTGCCACGAGCACTCCGGCGA TCCCTCCGGCTCCAACACCAAGTGCCACTGCACCAAGAGAAGGAAGAATCGGGTGAAGAAGACGATAAGGGTGCCGGCGG TGAGTTCGAAGGTGGCGGATATTCCGGCGGACGAGTACTCATGGAGGAAGTACGGTCAGAAACCGATCAAGGGCACACCA TACCCACGTGGTTATTACAAGTGCAGCACCGTGAGAGGGTGTCCGGCGAGGAAACACGTGGAGCGGGCAACGGATGATCC GGCGATGCTGATTGTGACGTACGAGGATGAGCACGATCATGGGATTCAGACCGCGATGCATGATAACATTTCTGGTGCTG TGGGTTTCGTATACGAGTCAACGTAA
Protein sequence (LotjaGi1g1v0395200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTVELMGFPQMDQQKKAIQEAANEGLKGMEHLINLLSHQPSHLQTDLTDVTVSNFKKLISLLNRTGHARFRRAPLPSTPT PPQPNPIAVHHPKPTVAQSLTLDFTKPNNFLTSNAKSLELEFSKETTTFSVSSNSSFLSSAITGDGSVSNGKLGSSIFLT PAVSAGGKPPLSSTTPSKKRCHEHSGDPSGSNTKCHCTKRRKNRVKKTIRVPAVSSKVADIPADEYSWRKYGQKPIKGTP YPRGYYKCSTVRGCPARKHVERATDDPAMLIVTYEDEHDHGIQTAMHDNISGAVGFVYEST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 293 | 282 | 2.2E-118 | – | |
| PANTHER | 12 | 293 | 282 | 2.2E-118 | – | |
| MobiDBLite | 164 | 202 | 39 | - | – | |
| Pfam | 178 | 220 | 43 | 2.5E-16 | ||
| Gene3D | 208 | 283 | 76 | 1.6E-28 | ||
| ProSiteProfiles | 217 | 283 | 67 | 30.549 | ||
| SUPERFAMILY | 220 | 282 | 63 | 7.72E-26 | ||
| SMART | 222 | 282 | 61 | 2.4E-35 | ||
| Pfam | 224 | 280 | 57 | 2.2E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0395200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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