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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0395600 |
| Transcript ID | LotjaGi1g1v0395600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BURP domain protein RD22; TAIR: AT5G25610.1 BURP domain-containing protein; Swiss-Prot: sp|Q08298|RD22_ARATH BURP domain protein RD22; TrEMBL-Plants: tr|I1JX51|I1JX51_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0395600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:88153907..88157057) extracted from Lotus japonicus Gifu genome v1.2.
TGCAGTTTCTATTTTCTCAGTACCTTTCTCATCTCTAAGCTCTCAGCTATGGAGCCTCATTGCCTAATTCGAATATTTTT CTCTCTCAGTGTGAGCTAATTACATTTTTCTCCTTTTTACTGAATAATTTGATTTCTTCATCATCTTTCTTTTAGTAAGT ATTCCACTTTTGAATCTGAAATGGATTTTTGCACGAATTTATTTAGTTGATGCTGATGACAACCCATGCTGCCTTACCTC CGGAAATTTACTGGAAAATGATGCTTCCAAGTACTCCCATGCCAAAAGCAATCGTAGAGCTACTGAGTAAGAAATTTAAG TTATATATATTGAAATACAATAGTCTATTAGTTTTACTTCTAAAATTTTAGTACTCAATTTCTAATTTTTCAACCCACAT GTCATGTTGTAATCAGACTACACTTAAAACTGCATATAAGAACTTCATCTAAGTTTTTTCTCAATTATGATTAAAATGTT GTAAAAATAAATGGAAAGTAGGAAAATGGACAGTATTGATCATCTATGTGAATAAGTCCATCATTTCTTTTTCCTTCTTT TAGTAGGATATTTTCCCCCTTTTCCCTTCTCTATTTTTCTACAACATTGGCTAATTTAGTCAATTCCTATTCATTAACTT ATGATGTTTGTGAATTCCCTAAAAAGAAGCATCCTTTCCTATGCCTTTGATTCTCTAAAGAAGGCGACGTTCGAAATTTG GAATAAAAAATATTTAAGCATGCTAGAGGACTAACAAAATGAAGTTCACCTATATATTGAGTATACCAGTCAATTAAATT CATTATGAGACATTGCAAATATATTTTTCTTTTAAAATAACTTAAAAAACTTACAGGAGGAGATGTGAGCATGAGGAAGA GTGCCGATACCTATAATCAATCAAAAGACGAACTCTCAAAACTTGGTGCTAAGAAGATTTTATCAGAAGATAATTTATTT TGGCTTCATGCGGGTAAAGCAACTCAATCAAAAGATCAACTTCTCATTTCGAGCCTTGGTGTTAAGGAGATCCCATCAGA AGATAATTTATTTTGGCTTCATGCGGGTAAAGCAACTCAATCAAAAGATCAACTCCTAATTTCGGACATTGGTGCTAAGG AGATCCCATCAGAAGATAATTTATTTTGGCTTCATGCGGGTAAAGTAACTCAATCAAAAGATCAACTCCTCATTTCGGAC CTTGGTGCTAAGGAGATCCCATCAGAAGATAATTCATTTTGGCTTCATGCTGATAAAGCAACTCGACCAAAAGATCAAGT TCTCATCTCAAACCTAGGTACTAAGGAGATTCCATCAGAAGATAATTTATTTTGGCTTCATGCTGGTAAAGCAACTCGAT CAAAAGATCAAGTCCCCATCTCAAACCTAGGTACTGAGGAGATTCCATCAGAAGATAATTTATTTTGGCTTCATGCTGGT AAGGAGACTCGGTCAAAAGATCAACTCCTCATTTCAGACCTTGGCACTAAGGAGATTCCATCACAAGATTCACTTTGGAT TTCTGCTAGCGAAGAGGCCCAATCAAAAGATGAAATCTTCATCTCAAACCTTGATGCTAAGGAGATTATTCCATCACAAG AGAATTCATTTTGGATTTCCTATAGTAAAGAGACTCAACTACCCAGTAACGCAAATGGTCTTGAAAATCCTGGTTCTAGT AACCATCACTTGCATGAGGTTTCATCACGCGCAAGTTTCTTCCTAGAAGATCAACTTCATTCAAGCAACAAATTTTACAT GCTCTTGAATAAGATAAGATCTGCAGCCCCATTGTTGCCTCGCCAAATTACACAGCAAATACCATTCTCACTAGACAAGA TGAAAGAAATATTGGAGATGCTTTCTATAAAACCCAACTCAAGGAATGCTGAGATTGTGGAGGAAACCATTGGTATTTGT GAAGCTCCTGCAATGGATGGAGAGGAAAAATACTGTGCAACTTCATTGGAATCCATGATAGATTTCGCCACTTCTAAGCT TGGCAATAACGTGCATGCTATGTCAACAAATGTGCAAAAAGAAACTAAACTACAAAATCTTTTAGTGAAAGATGGAGTAA AGAATTTAGCAGATGGTCATGTTATTGCTTGTCATCCCATGACATATCCGTATGTTGTCTTTGGTTGTCATGAATTACAC AAGACCAGCGCATATTATGTGCCCCTGGAAGGAGAAGATGGGGTTAGAGTCAAAGCAGTTGCGGTATGCCACAAAGACAC ATCAAAATGGGATCCAAATCATGTGGCTTTTCAAGTGCTCAAAGTCAAACCTGGAACGGTTCCAGTGTGTCATTTCTTCA CTGAGGGCCATGTTCTTTGGCTTTCCAAGTAGAGTACTTAAATTTGATTTGTAGTAATGATATTGAGATATATAGACAAA GCAGATACTCAGTATACACTTCATTTTTCTCTTTATCTCTCTTTTCATTTCTCTTTATAAATGTCTGTTGGATGTTTACA CTCATATACAGATGCCTACAAATCAAATTTGTACTCCTTATATGTATCCTTAAATAAGTGGACAAGTCTATGTAGTTCAA TCGGCAAGAAAAATAGAAGTTCATATGAGGAAACATGTAGACTTAATTGCACTTTTGGTCCCTCACGTTTGCCTTTTGTG CGGTTATCGTCCCTAAAGTAAAAAAATAGCAAAAAACGTCCCTCACTTTGTCAAACGACAGCACTTTAGGTCCTTCACCC CTATTCTGTCCAAATTTTAACGGTTTTTGAAAAAAAAAAAAAAAAAACTTATTTTTTCAATCTTCTTCGTTCACCTTTAG GCTTCAACACCATCAAAACCCAAAACATTGAAACCTAATTTCTGAATCAACTCATTAATCTATTAACATTCATTTAAATC ACAACAAAAACATGAAGGATCATGTAAGAGGAACGTAATGCTGGATATGCAATGAGAAGGCTTGATAGAACAAAATTTGG TAGAAAGGGGTGTTAGATTCCAAATCCATGATCCTTATAACCTTCAGTCTTGCTTACTTCATGTCACAGATTTAAAAACA ACGATAACCTCTTTCAGGTTCCAGATCCAGGTGGGTGAAGAAGAACCCAATTCTTAGCATCCCTAAAAAACTGAGCAAAC CCATGAACCAAGCACCCTTCTCCCCCTAAAA
CDS sequence (LotjaGi1g1v0395600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCCTCATTGCCTAATTCGAATATTTTTCTCTCTCAGTTTGATGCTGATGACAACCCATGCTGCCTTACCTCCGGA AATTTACTGGAAAATGATGCTTCCAAGTACTCCCATGCCAAAAGCAATCGTAGAGCTACTGAGAGGAGATGTGAGCATGA GGAAGAGTGCCGATACCTATAATCAATCAAAAGACGAACTCTCAAAACTTGGTGCTAAGAAGATTTTATCAGAAGATAAT TTATTTTGGCTTCATGCGGGTAAAGCAACTCAATCAAAAGATCAACTTCTCATTTCGAGCCTTGGTGTTAAGGAGATCCC ATCAGAAGATAATTTATTTTGGCTTCATGCGGGTAAAGCAACTCAATCAAAAGATCAACTCCTAATTTCGGACATTGGTG CTAAGGAGATCCCATCAGAAGATAATTTATTTTGGCTTCATGCGGGTAAAGTAACTCAATCAAAAGATCAACTCCTCATT TCGGACCTTGGTGCTAAGGAGATCCCATCAGAAGATAATTCATTTTGGCTTCATGCTGATAAAGCAACTCGACCAAAAGA TCAAGTTCTCATCTCAAACCTAGGTACTAAGGAGATTCCATCAGAAGATAATTTATTTTGGCTTCATGCTGGTAAAGCAA CTCGATCAAAAGATCAAGTCCCCATCTCAAACCTAGGTACTGAGGAGATTCCATCAGAAGATAATTTATTTTGGCTTCAT GCTGGTAAGGAGACTCGGTCAAAAGATCAACTCCTCATTTCAGACCTTGGCACTAAGGAGATTCCATCACAAGATTCACT TTGGATTTCTGCTAGCGAAGAGGCCCAATCAAAAGATGAAATCTTCATCTCAAACCTTGATGCTAAGGAGATTATTCCAT CACAAGAGAATTCATTTTGGATTTCCTATAGTAAAGAGACTCAACTACCCAGTAACGCAAATGGTCTTGAAAATCCTGGT TCTAGTAACCATCACTTGCATGAGGTTTCATCACGCGCAAGTTTCTTCCTAGAAGATCAACTTCATTCAAGCAACAAATT TTACATGCTCTTGAATAAGATAAGATCTGCAGCCCCATTGTTGCCTCGCCAAATTACACAGCAAATACCATTCTCACTAG ACAAGATGAAAGAAATATTGGAGATGCTTTCTATAAAACCCAACTCAAGGAATGCTGAGATTGTGGAGGAAACCATTGGT ATTTGTGAAGCTCCTGCAATGGATGGAGAGGAAAAATACTGTGCAACTTCATTGGAATCCATGATAGATTTCGCCACTTC TAAGCTTGGCAATAACGTGCATGCTATGTCAACAAATGTGCAAAAAGAAACTAAACTACAAAATCTTTTAGTGAAAGATG GAGTAAAGAATTTAGCAGATGGTCATGTTATTGCTTGTCATCCCATGACATATCCGTATGTTGTCTTTGGTTGTCATGAA TTACACAAGACCAGCGCATATTATGTGCCCCTGGAAGGAGAAGATGGGGTTAGAGTCAAAGCAGTTGCGGTATGCCACAA AGACACATCAAAATGGGATCCAAATCATGTGGCTTTTCAAGTGCTCAAAGTCAAACCTGGAACGGTTCCAGTGTGTCATT TCTTCACTGAGGGCCATGTTCTTTGGCTTTCCAAGTAG
Protein sequence (LotjaGi1g1v0395600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEPHCLIRIFFSLSLMLMTTHAALPPEIYWKMMLPSTPMPKAIVELLRGDVSMRKSADTYNQSKDELSKLGAKKILSEDN LFWLHAGKATQSKDQLLISSLGVKEIPSEDNLFWLHAGKATQSKDQLLISDIGAKEIPSEDNLFWLHAGKVTQSKDQLLI SDLGAKEIPSEDNSFWLHADKATRPKDQVLISNLGTKEIPSEDNLFWLHAGKATRSKDQVPISNLGTEEIPSEDNLFWLH AGKETRSKDQLLISDLGTKEIPSQDSLWISASEEAQSKDEIFISNLDAKEIIPSQENSFWISYSKETQLPSNANGLENPG SSNHHLHEVSSRASFFLEDQLHSSNKFYMLLNKIRSAAPLLPRQITQQIPFSLDKMKEILEMLSIKPNSRNAEIVEETIG ICEAPAMDGEEKYCATSLESMIDFATSKLGNNVHAMSTNVQKETKLQNLLVKDGVKNLADGHVIACHPMTYPYVVFGCHE LHKTSAYYVPLEGEDGVRVKAVAVCHKDTSKWDPNHVAFQVLKVKPGTVPVCHFFTEGHVLWLSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| PANTHER | 3 | 211 | 209 | 2.3E-132 | – | |
| PANTHER | 3 | 211 | 209 | 2.3E-132 | – | |
| Phobius | 5 | 17 | 13 | - | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 545 | 523 | - | – | |
| PANTHER | 321 | 544 | 224 | 2.3E-132 | – | |
| PANTHER | 321 | 544 | 224 | 2.3E-132 | – | |
| SMART | 333 | 545 | 213 | 1.1E-85 | ||
| ProSiteProfiles | 335 | 545 | 211 | 82.825 | ||
| Pfam | 335 | 543 | 209 | 2.9E-77 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0395600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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